View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3894_high_3 (Length: 248)
Name: NF3894_high_3
Description: NF3894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3894_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 1401396 - 1401627
Alignment:
| Q |
1 |
ttctcttacaaaagctttgactgttgcattaacttttgtacttttttcaggttgtttgtactgaaggacctgaccgagtcagagaactgattgctatggg |
100 |
Q |
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| T |
1401396 |
ttctcttactaaacctttgactgttgcattaagttttgtacttttttcaggttgtttgtactgaaggacctgaccgagtcagagaactgattgctatggg |
1401495 |
T |
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| Q |
101 |
cgcatcgtttgatcatggggaagatggtaacttgcatctagcgagggagggaggtcattcacataacagaatcgttcatgctgctgatatgacaggaaaa |
200 |
Q |
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| T |
1401496 |
cacatcgtttgatcatggggaagatggtaacttgcatctagcgagggagggaggtcattcacataacagaatcgttcatgctgctgatatgacaggaaaa |
1401595 |
T |
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| Q |
201 |
gagattgagcgcgctctattgaaggcagttat |
232 |
Q |
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| T |
1401596 |
gagattgagcgcgctcttttgaaggcagttat |
1401627 |
T |
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