View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3894_low_1 (Length: 874)
Name: NF3894_low_1
Description: NF3894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3894_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 234 - 529
Target Start/End: Original strand, 38028754 - 38029049
Alignment:
| Q |
234 |
ttaatggaaacacaaaacaactaaggaaccaatgatctcaaaacgatgccatcgcaagcagccaatcactaagattccaccgcataccaccactgtcttc |
333 |
Q |
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| T |
38028754 |
ttaatggaaacacaaaacaagtaaggaagcattgatctcaaaacgatgccatcgcaagcagccaatcactaagattctaccgcataccaccaccgtcttc |
38028853 |
T |
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| Q |
334 |
tgtttttctcatctttatctaaccatgttcaaaacaaagcatttgatcacaattgattggcaaacacattgccctcaacgacactgtttcagcaatgaaa |
433 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38028854 |
tgtttttctcatctttatctaaccatgttcaaaacaaagcatttgatcacaattgattggcaaacacattgccctcaacgacactgtttcagcaatgaaa |
38028953 |
T |
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| Q |
434 |
tccaaatcaaacgaccacaatgcaaacaggcatgaactcaataatcgccgcaacattctcaccaataatcaaacacaaaacgcaaaaaactgcaca |
529 |
Q |
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| T |
38028954 |
tccaaatcaaacgaccacaatgcaaacaggcatgaactcaacaatcgccgcaacagtctcaccaataatcaaacacaaaacgcaaaaaactgcaca |
38029049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 9 - 181
Target Start/End: Original strand, 38028612 - 38028784
Alignment:
| Q |
9 |
gagcagagacatcaaggtgagggaaaaatggtgatgctatctaagagtagcacaacaaaaagtttcaatatctgcacaatcttgttgtcgttcatagact |
108 |
Q |
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| T |
38028612 |
gagcagaggcatcaaggtgagggaaaaatagtgatgctatctaagagtagcacaacaaaaagtttcaatatctgcacaatcttgttgtcgttcatagact |
38028711 |
T |
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| Q |
109 |
tattaacactccactctaaaaatggatcagatcaaagagtttttaatggaaacacaaaacaagtaagaaagca |
181 |
Q |
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| T |
38028712 |
tattaacactccactctaaaaatggatcagatcaaagagtttttaatggaaacacaaaacaagtaaggaagca |
38028784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 606 - 677
Target Start/End: Original strand, 38029127 - 38029198
Alignment:
| Q |
606 |
ccagagttttcaagagccaagtgattatagtggttgatttgtttagacaaagttgatctaatagaattttac |
677 |
Q |
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| T |
38029127 |
ccagagttttcaagagccaagtgattatagtggttgattcgtttagacaaagttgatctaatagaaatttac |
38029198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 2e-30; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 606 - 694
Target Start/End: Original strand, 31574789 - 31574877
Alignment:
| Q |
606 |
ccagagttttcaagagccaagtgattatagtggttgatttgtttagacaaagttgatctaatagaattttacgaagtgaaaagagaaac |
694 |
Q |
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| T |
31574789 |
ccagagttttcaagagccaagtgattatagtggttgatttgtttagacaaagttgttgttatagaaatttatgaagtgaaaagagaaac |
31574877 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 443 - 533
Target Start/End: Original strand, 31574623 - 31574713
Alignment:
| Q |
443 |
aacgaccacaatgcaaacaggcatgaactcaataatcgccgcaacattctcaccaataatcaaacacaaaacgcaaaaaactgcacagaac |
533 |
Q |
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| T |
31574623 |
aacgaccacaatgcaaacaggcatgaactcaacactcgccccaacaatctccccaataatcaaacactaaacacaaaaaactgcacagaac |
31574713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 327 - 378
Target Start/End: Original strand, 31574566 - 31574617
Alignment:
| Q |
327 |
tgtcttctgtttttctcatctttatctaaccatgttcaaaacaaagcatttg |
378 |
Q |
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| T |
31574566 |
tgtcttctgtttttctcatctttatctaaccatgttcaaaacaaagcatttg |
31574617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 266 - 310
Target Start/End: Original strand, 31574520 - 31574564
Alignment:
| Q |
266 |
tgatctcaaaacgatgccatcgcaagcagccaatcactaagattc |
310 |
Q |
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| T |
31574520 |
tgatctcaaattgatgccatagcaagcagccaatcactaagattc |
31574564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 6e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 608 - 694
Target Start/End: Original strand, 6509593 - 6509679
Alignment:
| Q |
608 |
agagttttcaagagccaagtgattatagtggttgatttgtttagacaaagttgatctaatagaattttacgaagtgaaaagagaaac |
694 |
Q |
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| T |
6509593 |
agagttttcaagagccaagtgattatagtggttgattcgtttagacaaagttgttgttatagaaatttatgaagtgaaaagagaaac |
6509679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 443 - 533
Target Start/End: Original strand, 6509418 - 6509512
Alignment:
| Q |
443 |
aacgaccacaatgcaaacaggcatgaactcaataatcgccgcaacattctcaccaataatcaaacac----aaaacgcaaaaaactgcacagaac |
533 |
Q |
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| T |
6509418 |
aacgaccacaatgcaaacaggcatgaactcaacagtcgctccaacaatctcaccaataatcaaacactaaataaacacaaaaaactgcacagaac |
6509512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 228
Target Start/End: Complemental strand, 15150883 - 15150837
Alignment:
| Q |
182 |
attaagattaaaattaagcaataacaaataacggaaagtgaaaacta |
228 |
Q |
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| T |
15150883 |
attaagattaaaatattgcaataacaaataacagaaagtgaaaacta |
15150837 |
T |
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