View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3894_low_2 (Length: 259)

Name: NF3894_low_2
Description: NF3894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3894_low_2
NF3894_low_2
[»] chr4 (4 HSPs)
chr4 (7-253)||(24068787-24069033)
chr4 (96-160)||(4384462-4384526)
chr4 (24-60)||(34375876-34375912)
chr4 (6-50)||(41162196-41162240)
[»] chr7 (7 HSPs)
chr7 (96-247)||(22603657-22603808)
chr7 (68-226)||(21854140-21854298)
chr7 (18-53)||(27708931-27708966)
chr7 (195-253)||(22635456-22635514)
chr7 (21-54)||(31691270-31691303)
chr7 (21-53)||(22759064-22759096)
chr7 (16-52)||(48496600-48496636)
[»] chr8 (2 HSPs)
chr8 (15-54)||(31167864-31167903)
chr8 (23-64)||(12291784-12291825)
[»] chr5 (3 HSPs)
chr5 (16-50)||(34198333-34198367)
chr5 (16-50)||(36638644-36638678)
chr5 (21-62)||(30845192-30845233)
[»] chr3 (2 HSPs)
chr3 (21-55)||(4534499-4534533)
chr3 (207-247)||(25093180-25093220)
[»] chr2 (2 HSPs)
chr2 (21-54)||(6772695-6772728)
chr2 (21-57)||(11864071-11864107)
[»] chr1 (5 HSPs)
chr1 (21-54)||(6933117-6933150)
chr1 (16-53)||(41638448-41638485)
chr1 (16-52)||(14737836-14737872)
chr1 (21-53)||(32555703-32555735)
chr1 (20-52)||(48146172-48146204)
[»] scaffold0024 (1 HSPs)
scaffold0024 (17-53)||(23806-23842)


Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 7 - 253
Target Start/End: Original strand, 24068787 - 24069033
Alignment:
Q  7 taaacgctaatatgataagtgcttaattaagttgattatccaaacagaaccatagtaaatcacctggattgtcagcaaggaatcgtatcgcaacccaacc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24068787 taaacgctaatatgataagtgcttaattaagttgattatccaaacagaaccatagtaaatcacctggattgtcagcaaggaatcgtatcgcaacccaacc 24068886  T
Q  107 accagaaggcacagcaacagtattcctctcaacaggatcaagaagattaaactttgcagggtcactactagcattaaaatttcctaaaccttgaccagca 206  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  24068887 accagaaggcacagcaacagtattcctctcaacaggatcaacaagattaaactttgcagggtcactactagcattaaaatttccaaaaccttgaccaaca 24068986  T
Q  207 acaaagaaattaaatccatgaagatgcaaaggatgactctctgctcc 253  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||    
T  24068987 acaaagaaattaaatccatgaagatgcaaaggatgactctcagctcc 24069033  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 160
Target Start/End: Complemental strand, 4384526 - 4384462
Alignment:
Q  96 gcaacccaaccaccagaaggcacagcaacagtattcctctcaacaggatcaagaagattaaactt 160  Q
    ||||||||||||||||  || ||| ||||||| ||||| ||||||||||||| ||| ||||||||    
T  4384526 gcaacccaaccaccagctggtacaccaacagtgttcctttcaacaggatcaacaaggttaaactt 4384462  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 34375876 - 34375912
Alignment:
Q  24 agtgcttaattaagttgattatccaaacagaaccata 60  Q
    ||||||||||||||||| |||||||||||| ||||||    
T  34375876 agtgcttaattaagttgcttatccaaacaggaccata 34375912  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 41162196 - 41162240
Alignment:
Q  6 ataaacgctaatatgataagtgcttaattaagttgattatccaaa 50  Q
    ||||||||| || | |||||||||||||||||||| |||||||||    
T  41162196 ataaacgcttatgttataagtgcttaattaagttgtttatccaaa 41162240  T

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Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 96 - 247
Target Start/End: Complemental strand, 22603808 - 22603657
Alignment:
Q  96 gcaacccaaccaccagaaggcacagcaacagtattcctctcaacaggatcaagaagattaaactttgcagggtcactactagcattaaaatttcctaaac 195  Q
    |||||||||||||||| ||| ||| ||||||| ||||| |||||||||||||  | |||||| |||||||| ||  || |||||| | ||||||| ||||    
T  22603808 gcaacccaaccaccagcaggaacaccaacagtgttcctttcaacaggatcaaccaaattaaattttgcaggatctttattagcatcataatttccaaaac 22603709  T
Q  196 cttgaccagcaacaaagaaattaaatccatgaagatgcaaaggatgactctc 247  Q
    |||| ||| ||||||| |||| | | ||||||||||||||||| ||||||||    
T  22603708 cttgtccaacaacaaaaaaatcataaccatgaagatgcaaagggtgactctc 22603657  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 226
Target Start/End: Complemental strand, 21854298 - 21854140
Alignment:
Q  68 acctggattgtcagcaaggaatcgtatcgcaacccaaccaccagaaggcacagcaacagtattcctctcaacaggatcaagaagattaaactttgcaggg 167  Q
    ||||||||| || || |||||||  || |||||||| |||||||| || ||| |||| |||||||| ||||||||||||| ||||||||| |||   ||     
T  21854298 acctggattatctgctaggaatctgatagcaacccatccaccagatggaacaccaactgtattcctttcaacaggatcaacaagattaaaattttgtgga 21854199  T
Q  168 tcactactagcattaaaatttcctaaaccttgaccagcaacaaagaaattaaatccatg 226  Q
    |||||| | | || ||| || || || ||||| ||| |||||||||| |||||||||||    
T  21854198 tcactatttgaatcaaagttaccaaatccttgtccaacaacaaagaagttaaatccatg 21854140  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 27708931 - 27708966
Alignment:
Q  18 atgataagtgcttaattaagttgattatccaaacag 53  Q
    ||||||||||||||||||||||| ||||||||||||    
T  27708931 atgataagtgcttaattaagttgtttatccaaacag 27708966  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 253
Target Start/End: Original strand, 22635456 - 22635514
Alignment:
Q  195 ccttgaccagcaacaaagaaattaaatccatgaagatgcaaaggatgactctctgctcc 253  Q
    ||||||||| |||  ||||| ||||| |||||||||||||| ||||||||||| |||||    
T  22635456 ccttgaccaacaatgaagaagttaaaaccatgaagatgcaatggatgactctcagctcc 22635514  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 31691270 - 31691303
Alignment:
Q  21 ataagtgcttaattaagttgattatccaaacaga 54  Q
    |||||||||||||||||||| |||||||||||||    
T  31691270 ataagtgcttaattaagttgtttatccaaacaga 31691303  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 22759096 - 22759064
Alignment:
Q  21 ataagtgcttaattaagttgattatccaaacag 53  Q
    |||||||||||||||||||| ||||||||||||    
T  22759096 ataagtgcttaattaagttgtttatccaaacag 22759064  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 48496636 - 48496600
Alignment:
Q  16 atatgataagtgcttaattaagttgattatccaaaca 52  Q
    |||||||||||||||||| |||||| |||||||||||    
T  48496636 atatgataagtgcttaatcaagttgtttatccaaaca 48496600  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 31167903 - 31167864
Alignment:
Q  15 aatatgataagtgcttaattaagttgattatccaaacaga 54  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  31167903 aatatgataagtgcttaattaagttgtttatccaaacaga 31167864  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 12291784 - 12291825
Alignment:
Q  23 aagtgcttaattaagttgattatccaaacagaaccatagtaa 64  Q
    |||||||||||||||||| ||||||||||| |||| ||||||    
T  12291784 aagtgcttaattaagttgtttatccaaacaaaaccttagtaa 12291825  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 34198367 - 34198333
Alignment:
Q  16 atatgataagtgcttaattaagttgattatccaaa 50  Q
    |||||||||||||||||||||||||||||||||||    
T  34198367 atatgataagtgcttaattaagttgattatccaaa 34198333  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 36638678 - 36638644
Alignment:
Q  16 atatgataagtgcttaattaagttgattatccaaa 50  Q
    ||||||||||||||||||||||||| |||||||||    
T  36638678 atatgataagtgcttaattaagttgtttatccaaa 36638644  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 30845233 - 30845192
Alignment:
Q  21 ataagtgcttaattaagttgattatccaaacagaaccatagt 62  Q
    |||||||||||||||||||| |||||||||||| ||| ||||    
T  30845233 ataagtgcttaattaagttgtttatccaaacaggaccctagt 30845192  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 4534499 - 4534533
Alignment:
Q  21 ataagtgcttaattaagttgattatccaaacagaa 55  Q
    |||||||||||||||||||| ||||||||||||||    
T  4534499 ataagtgcttaattaagttgtttatccaaacagaa 4534533  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 247
Target Start/End: Complemental strand, 25093220 - 25093180
Alignment:
Q  207 acaaagaaattaaatccatgaagatgcaaaggatgactctc 247  Q
    |||||||||||||||||||||||||| | ||||||| ||||    
T  25093220 acaaagaaattaaatccatgaagatgaataggatgattctc 25093180  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 6772695 - 6772728
Alignment:
Q  21 ataagtgcttaattaagttgattatccaaacaga 54  Q
    |||||||||||||||||||| |||||||||||||    
T  6772695 ataagtgcttaattaagttgtttatccaaacaga 6772728  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 11864071 - 11864107
Alignment:
Q  21 ataagtgcttaattaagttgattatccaaacagaacc 57  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  11864071 ataagtgcttatttaagttgattatccaaacataacc 11864107  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 6933117 - 6933150
Alignment:
Q  21 ataagtgcttaattaagttgattatccaaacaga 54  Q
    |||||||||||||||||||| |||||||||||||    
T  6933117 ataagtgcttaattaagttgtttatccaaacaga 6933150  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 41638448 - 41638485
Alignment:
Q  16 atatgataagtgcttaattaagttgattatccaaacag 53  Q
    |||||||||||||||||| |||||| ||||||||||||    
T  41638448 atatgataagtgcttaatcaagttgtttatccaaacag 41638485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 14737836 - 14737872
Alignment:
Q  16 atatgataagtgcttaattaagttgattatccaaaca 52  Q
    |||||||||||||||||||||| || |||||||||||    
T  14737836 atatgataagtgcttaattaagctgcttatccaaaca 14737872  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 32555735 - 32555703
Alignment:
Q  21 ataagtgcttaattaagttgattatccaaacag 53  Q
    |||||||||||||||||||| ||||||||||||    
T  32555735 ataagtgcttaattaagttgtttatccaaacag 32555703  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 48146172 - 48146204
Alignment:
Q  20 gataagtgcttaattaagttgattatccaaaca 52  Q
    ||||||||||||||||||||| |||||||||||    
T  48146172 gataagtgcttaattaagttgtttatccaaaca 48146204  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 23842 - 23806
Alignment:
Q  17 tatgataagtgcttaattaagttgattatccaaacag 53  Q
    ||||||||||| |||||||||||| ||||||||||||    
T  23842 tatgataagtgtttaattaagttgtttatccaaacag 23806  T

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