View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3894_low_5 (Length: 239)

Name: NF3894_low_5
Description: NF3894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3894_low_5
NF3894_low_5
[»] chr3 (44 HSPs)
chr3 (56-239)||(31651410-31651593)
chr3 (63-239)||(32858770-32858946)
chr3 (105-239)||(15499264-15499398)
chr3 (105-239)||(33944605-33944739)
chr3 (106-239)||(35283070-35283203)
chr3 (65-239)||(1132900-1133064)
chr3 (105-239)||(3537190-3537322)
chr3 (106-239)||(53888470-53888603)
chr3 (112-239)||(39499187-39499314)
chr3 (105-239)||(5939746-5939880)
chr3 (105-239)||(50948188-50948322)
chr3 (106-235)||(29623220-29623348)
chr3 (105-218)||(51686489-51686601)
chr3 (114-238)||(52620801-52620915)
chr3 (147-239)||(40674131-40674223)
chr3 (49-161)||(46017153-46017264)
chr3 (112-239)||(31178212-31178338)
chr3 (105-239)||(38639571-38639695)
chr3 (106-239)||(11500087-11500217)
chr3 (106-204)||(21777636-21777734)
chr3 (106-239)||(517597-517729)
chr3 (105-161)||(7435658-7435713)
chr3 (105-161)||(25754145-25754201)
chr3 (105-161)||(37674183-37674239)
chr3 (105-161)||(53664642-53664698)
chr3 (112-218)||(27197241-27197347)
chr3 (116-239)||(41961942-41962065)
chr3 (140-239)||(46891403-46891502)
chr3 (112-218)||(24242078-24242184)
chr3 (106-160)||(24588327-24588381)
chr3 (105-191)||(33908962-33909048)
chr3 (193-239)||(36637870-36637916)
chr3 (112-158)||(38515239-38515285)
chr3 (193-239)||(48656949-48656995)
chr3 (61-159)||(49855853-49855951)
chr3 (112-165)||(14271801-14271854)
chr3 (112-161)||(50535145-50535194)
chr3 (175-239)||(2420711-2420775)
chr3 (135-239)||(7661048-7661152)
chr3 (112-160)||(36796412-36796460)
chr3 (179-239)||(37545234-37545294)
chr3 (105-161)||(41099770-41099825)
chr3 (106-218)||(45570929-45571041)
chr3 (112-160)||(49683045-49683093)
[»] chr2 (35 HSPs)
chr2 (105-239)||(43572509-43572643)
chr2 (105-239)||(11515026-11515160)
chr2 (105-239)||(37194249-37194383)
chr2 (106-218)||(40211986-40212098)
chr2 (105-239)||(26905786-26905920)
chr2 (116-239)||(11522145-11522267)
chr2 (112-239)||(36567243-36567370)
chr2 (105-239)||(13018443-13018577)
chr2 (106-235)||(16519058-16519187)
chr2 (113-239)||(39205006-39205133)
chr2 (106-239)||(9087430-9087562)
chr2 (105-239)||(21626105-21626241)
chr2 (112-239)||(3038912-3039038)
chr2 (106-161)||(5322162-5322217)
chr2 (105-239)||(28539391-28539524)
chr2 (106-236)||(31584734-31584863)
chr2 (105-161)||(1364815-1364871)
chr2 (106-218)||(21834924-21835036)
chr2 (106-161)||(4003411-4003466)
chr2 (112-239)||(4041953-4042080)
chr2 (112-239)||(13765904-13766030)
chr2 (106-161)||(30072105-30072159)
chr2 (106-161)||(39819881-39819935)
chr2 (112-239)||(40357446-40357573)
chr2 (129-239)||(18826191-18826301)
chr2 (106-212)||(26599241-26599347)
chr2 (107-161)||(34757589-34757643)
chr2 (106-239)||(3737201-3737323)
chr2 (178-239)||(4666190-4666251)
chr2 (112-161)||(41100148-41100196)
chr2 (127-219)||(567391-567482)
chr2 (115-239)||(8555741-8555865)
chr2 (106-218)||(12941784-12941896)
chr2 (179-239)||(14385136-14385196)
chr2 (112-160)||(32243464-32243512)
[»] chr1 (39 HSPs)
chr1 (105-238)||(36269725-36269858)
chr1 (105-239)||(37649581-37649715)
chr1 (105-239)||(41817264-41817398)
chr1 (105-239)||(29092068-29092202)
chr1 (105-239)||(5584487-5584621)
chr1 (105-239)||(2909100-2909233)
chr1 (105-239)||(46001548-46001682)
chr1 (105-218)||(36886851-36886964)
chr1 (112-239)||(1688182-1688308)
chr1 (112-239)||(17688329-17688455)
chr1 (177-239)||(30543328-30543390)
chr1 (182-239)||(49102937-49102994)
chr1 (106-239)||(41432727-41432863)
chr1 (105-239)||(17760450-17760574)
chr1 (112-239)||(47206389-47206515)
chr1 (112-239)||(47905654-47905781)
chr1 (114-239)||(8156302-8156428)
chr1 (106-236)||(34738299-34738429)
chr1 (147-239)||(6015455-6015547)
chr1 (105-237)||(32287563-32287694)
chr1 (115-166)||(7412630-7412681)
chr1 (112-239)||(23871428-23871555)
chr1 (112-239)||(27499973-27500100)
chr1 (106-161)||(28848832-28848887)
chr1 (112-239)||(33991530-33991657)
chr1 (115-238)||(39508762-39508885)
chr1 (106-212)||(7915496-7915602)
chr1 (112-238)||(13255333-13255459)
chr1 (177-239)||(27255253-27255315)
chr1 (193-239)||(35619479-35619525)
chr1 (116-239)||(43036288-43036401)
chr1 (112-239)||(12293799-12293928)
chr1 (112-161)||(50476527-50476576)
chr1 (105-209)||(4204774-4204877)
chr1 (135-239)||(6537970-6538074)
chr1 (107-159)||(30543398-30543450)
chr1 (105-161)||(34154371-34154427)
chr1 (106-150)||(40243354-40243398)
chr1 (105-161)||(52068180-52068236)
[»] chr7 (27 HSPs)
chr7 (105-239)||(15748914-15749048)
chr7 (106-239)||(1277921-1278054)
chr7 (105-239)||(16805532-16805666)
chr7 (112-239)||(28437507-28437634)
chr7 (105-239)||(45940375-45940499)
chr7 (178-239)||(14676285-14676346)
chr7 (105-212)||(2826239-2826346)
chr7 (114-239)||(23465965-23466087)
chr7 (105-239)||(38505309-38505433)
chr7 (112-239)||(41002216-41002343)
chr7 (106-212)||(13697265-13697371)
chr7 (105-239)||(32650356-32650490)
chr7 (61-239)||(33187812-33187988)
chr7 (177-239)||(43348204-43348266)
chr7 (105-158)||(43741687-43741740)
chr7 (112-236)||(3658479-3658603)
chr7 (112-239)||(33406597-33406724)
chr7 (106-161)||(38137924-38137979)
chr7 (177-239)||(30081422-30081484)
chr7 (105-165)||(4058178-4058238)
chr7 (112-165)||(19644290-19644343)
chr7 (114-239)||(23620758-23620883)
chr7 (106-204)||(425319-425419)
chr7 (105-164)||(4125931-4125988)
chr7 (105-161)||(33872154-33872210)
chr7 (114-166)||(39856403-39856454)
chr7 (97-161)||(44487360-44487424)
[»] chr6 (14 HSPs)
chr6 (105-239)||(1567263-1567397)
chr6 (105-239)||(33590294-33590426)
chr6 (127-238)||(32222007-32222117)
chr6 (137-239)||(2502331-2502433)
chr6 (112-239)||(26574360-26574487)
chr6 (105-239)||(32719351-32719475)
chr6 (112-239)||(24734871-24734996)
chr6 (112-239)||(23095093-23095220)
chr6 (112-239)||(29241798-29241925)
chr6 (105-239)||(12779496-12779629)
chr6 (177-239)||(20381831-20381893)
chr6 (121-239)||(26481096-26481214)
chr6 (105-166)||(20820568-20820629)
chr6 (177-237)||(13380585-13380645)
[»] chr4 (33 HSPs)
chr4 (105-239)||(12708799-12708933)
chr4 (105-239)||(30198736-30198870)
chr4 (112-239)||(38136799-38136926)
chr4 (106-186)||(21081333-21081413)
chr4 (105-239)||(28175429-28175563)
chr4 (105-239)||(16318599-16318733)
chr4 (106-239)||(42650619-42650752)
chr4 (112-239)||(7182156-7182283)
chr4 (137-239)||(27143192-27143294)
chr4 (106-235)||(11976820-11976949)
chr4 (115-239)||(15498759-15498882)
chr4 (105-161)||(49936497-49936553)
chr4 (147-239)||(52554964-52555056)
chr4 (105-239)||(29114208-29114332)
chr4 (112-239)||(31530008-31530135)
chr4 (105-139)||(43793414-43793448)
chr4 (106-239)||(13269936-13270069)
chr4 (178-239)||(28880046-28880107)
chr4 (106-239)||(46669910-46670043)
chr4 (177-238)||(55509931-55509992)
chr4 (105-239)||(30307355-30307485)
chr4 (112-160)||(38317273-38317321)
chr4 (106-161)||(35959179-35959234)
chr4 (112-239)||(41363777-41363904)
chr4 (63-206)||(45971501-45971643)
chr4 (106-157)||(54205822-54205873)
chr4 (105-159)||(45823537-45823591)
chr4 (193-239)||(48620359-48620405)
chr4 (194-239)||(47063753-47063798)
chr4 (106-239)||(47669793-47669926)
chr4 (112-160)||(21296149-21296197)
chr4 (66-161)||(31428753-31428849)
chr4 (63-164)||(54723937-54724037)
[»] chr5 (29 HSPs)
chr5 (106-239)||(6491167-6491300)
chr5 (105-239)||(39649553-39649687)
chr5 (105-239)||(10955655-10955789)
chr5 (105-239)||(35683438-35683572)
chr5 (112-239)||(19389793-19389909)
chr5 (115-239)||(27480137-27480261)
chr5 (116-239)||(6373131-6373253)
chr5 (116-239)||(6632642-6632764)
chr5 (178-239)||(17668099-17668160)
chr5 (147-239)||(1935072-1935164)
chr5 (116-215)||(3938120-3938218)
chr5 (121-239)||(3081297-3081414)
chr5 (106-239)||(1658160-1658293)
chr5 (178-239)||(3676480-3676541)
chr5 (112-161)||(13294017-13294065)
chr5 (105-239)||(5772695-5772819)
chr5 (105-239)||(10437968-10438092)
chr5 (105-212)||(13569345-13569452)
chr5 (105-159)||(10843026-10843080)
chr5 (178-239)||(5088835-5088896)
chr5 (106-159)||(5836871-5836924)
chr5 (183-239)||(4841674-4841730)
chr5 (105-161)||(9096301-9096357)
chr5 (105-161)||(14570083-14570139)
chr5 (112-160)||(25026911-25026959)
chr5 (112-160)||(35701049-35701097)
chr5 (105-161)||(38568410-38568466)
chr5 (127-239)||(39011836-39011947)
chr5 (112-160)||(41694966-41695014)
[»] scaffold0136 (1 HSPs)
scaffold0136 (105-239)||(1988-2122)
[»] chr8 (26 HSPs)
chr8 (112-239)||(40985039-40985166)
chr8 (105-239)||(21173823-21173957)
chr8 (106-239)||(1839785-1839918)
chr8 (112-239)||(2474732-2474858)
chr8 (112-239)||(43733085-43733212)
chr8 (105-216)||(12506184-12506295)
chr8 (105-238)||(43239652-43239784)
chr8 (106-235)||(39193914-39194043)
chr8 (183-239)||(16424198-16424254)
chr8 (105-189)||(23932573-23932657)
chr8 (106-239)||(10589787-10589920)
chr8 (135-239)||(27085360-27085464)
chr8 (106-161)||(79656-79711)
chr8 (112-239)||(13865057-13865183)
chr8 (105-239)||(26772617-26772741)
chr8 (177-239)||(36837463-36837525)
chr8 (193-239)||(41455329-41455375)
chr8 (177-218)||(6943452-6943493)
chr8 (178-239)||(31305750-31305811)
chr8 (178-239)||(35616615-35616676)
chr8 (135-239)||(1942018-1942122)
chr8 (114-166)||(3393974-3394025)
chr8 (106-166)||(8950329-8950388)
chr8 (112-160)||(25033369-25033417)
chr8 (135-239)||(31297313-31297417)
chr8 (115-239)||(36906179-36906303)
[»] scaffold0128 (1 HSPs)
scaffold0128 (105-239)||(26361-26496)
[»] scaffold0248 (1 HSPs)
scaffold0248 (105-239)||(161-295)
[»] scaffold0053 (1 HSPs)
scaffold0053 (105-239)||(29226-29360)
[»] scaffold0051 (2 HSPs)
scaffold0051 (105-239)||(6722-6856)
scaffold0051 (105-239)||(7705-7839)
[»] scaffold0031 (1 HSPs)
scaffold0031 (105-239)||(93471-93605)
[»] scaffold0028 (1 HSPs)
scaffold0028 (112-239)||(35420-35546)
[»] scaffold0119 (1 HSPs)
scaffold0119 (178-239)||(37176-37237)


Alignment Details
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 44)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 56 - 239
Target Start/End: Complemental strand, 31651593 - 31651410
Alignment:
Q  56 taagcgaaagaaatagaagacattgagatgggaagctttttggagtttgcttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgt 155  Q
    |||| |||||||||| ||||| ||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  31651593 taagtgaaagaaataaaagacgttgagatggaaagctttttggagtttacttttcttcataatacaaaatcctcctcattttggaaaacttaaaaattgt 31651494  T
Q  156 attggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaatatatgtagctatgatattcttaaaatt 239  Q
    ||||||||||||| |||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  31651493 attggatgagaattttagggggttttgaagggttaaaatgaattcttcacatttaatatatgtagctatgatattcttaaaatt 31651410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 63 - 239
Target Start/End: Original strand, 32858770 - 32858946
Alignment:
Q  63 aagaaatagaagacattgagatgggaagctttttggagtttgcttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggat 162  Q
    |||||||||| |||||||||| || |||  ||| || |||   ||||| |||||||| |||||||||||||||| || ||||| |||||||||||| ||     
T  32858770 aagaaatagatgacattgagagggaaaggctttgggggttcatttttcttcataatataaaatcctcctcatttgggggaactcaaaaattgtattcgag 32858869  T
Q  163 gagaatattagggagttttggagggttaaaatgaattcttcatatttaatatatgtagctatgatattcttaaaatt 239  Q
    |||| | || ||| ||||||||||||| | |||||||| ||| ||||||| ||||||| ||| ||||||||||||||    
T  32858870 gagagttttggggggttttggagggtttacatgaattcatcaaatttaatctatgtagttataatattcttaaaatt 32858946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 105 - 239
Target Start/End: Complemental strand, 15499398 - 15499264
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttca 204  Q
    |||||| ||||||||||||||| ||||||||| |||||||| ||||||||||||||| ||  || || | | |||||| |||||| | || |||| ||||    
T  15499398 cttttcttcataatacaaaatcttcctcatttgggagaactcaaaaattgtattggaggatgattttggagggttttgaagggtttacataaatttttca 15499299  T
Q  205 tatttaatatatgtagctatgatattcttaaaatt 239  Q
     ||||||| ||||||| ||| ||||||||||||||    
T  15499298 aatttaatctatgtagttataatattcttaaaatt 15499264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 105 - 239
Target Start/End: Complemental strand, 33944739 - 33944605
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttca 204  Q
    |||||| ||||||||||||| ||||||||||| |  ||||| ||||||||||||||| |||  | || ||| ||||||||||||||| | ||||||||||    
T  33944739 cttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattgtattggaggagggttttggggggttttggagggttaataagaattcttca 33944640  T
Q  205 tatttaatatatgtagctatgatattcttaaaatt 239  Q
     ||||||| ||||| | ||| || || ||||||||    
T  33944639 aatttaatttatgttgttataatgtttttaaaatt 33944605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 106 - 239
Target Start/End: Original strand, 35283070 - 35283203
Alignment:
Q  106 ttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcat 205  Q
    ||||| ||| |||| |||| ||||||||||| || ||||| ||||||||||||||| ||   | ||  || |||| |||||||| | |||||||||||||    
T  35283070 ttttcttcaaaatataaaaccctcctcatttgggggaactaaaaaattgtattggaggaaggttttgaggggtttgggagggtttatatgaattcttcat 35283169  T
Q  206 atttaatatatgtagctatgatattcttaaaatt 239  Q
    ||||||||||||| | ||| ||||||||||||||    
T  35283170 atttaatatatgttgttataatattcttaaaatt 35283203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 65 - 239
Target Start/End: Complemental strand, 1133064 - 1132900
Alignment:
Q  65 gaaatagaagacattgagatgggaagctttttggagtttgcttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatga 164  Q
    |||||||| |||||||||| |||||| |||| || |||   ||| | |||||||||||||  ||||||||||||| ||||| ||||||||||||||| ||    
T  1133064 gaaatagatgacattgagaggggaaggttttgggggttcattttacttcataatacaaaactctcctcattttggggaactcaaaaattgtattggagga 1132965  T
Q  165 gaatattagggagttttggagggttaaaatgaattcttcatatttaatatatgtagctatgatattcttaaaatt 239  Q
              | ||||||||||||| | |||||||||| | ||||||| ||||||| | | ||||||||||||||    
T  1132964 ----------gggttttggagggtttacatgaattctttaaatttaatctatgtagttgtaatattcttaaaatt 1132900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 105 - 239
Target Start/End: Original strand, 3537190 - 3537322
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttca 204  Q
    |||||| ||||||||||||| ||||||||||| || ||||| ||||||||||||||| |||| | || |||  |||| ||||||  | ||||||||||||    
T  3537190 cttttcttcataatacaaaaccctcctcatttgggggaactaaaaaattgtattggaggagagttttgggggtttttagagggt--atatgaattcttca 3537287  T
Q  205 tatttaatatatgtagctatgatattcttaaaatt 239  Q
     ||||||| |||||   ||| ||||| ||||||||    
T  3537288 aatttaatctatgttaatataatatttttaaaatt 3537322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 106 - 239
Target Start/End: Original strand, 53888470 - 53888603
Alignment:
Q  106 ttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcat 205  Q
    ||||| ||| |||| |||| ||||||  ||| || ||||| ||||||||||||||| |||  | || ||| |||| |||||||| | ||||||||||||     
T  53888470 ttttcttcaaaatataaaaccctccttgtttgggggaactaaaaaattgtattggaggagggttttggggggtttgggagggtttatatgaattcttcaa 53888569  T
Q  206 atttaatatatgtagctatgatattcttaaaatt 239  Q
    ||||||||||||| |  || ||||||||||||||    
T  53888570 atttaatatatgttgtaataatattcttaaaatt 53888603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 112 - 239
Target Start/End: Original strand, 39499187 - 39499314
Alignment:
Q  112 tcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaa 211  Q
    |||||||| ||||||  |||||||| ||  |||| ||||||||||||||  ||| || |||||| ||| ||||||||| | ||||||| |||| ||| ||    
T  39499187 tcataataaaaaatctccctcatttagggaaactcaaaaattgtattgggggaggattttagggggttatggagggtttatatgaatttttcaaattcaa 39499286  T
Q  212 tatatgtagctatgatattcttaaaatt 239  Q
    | ||||| | ||| ||||||||||||||    
T  39499287 tctatgttgttataatattcttaaaatt 39499314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 239
Target Start/End: Complemental strand, 5939880 - 5939746
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttca 204  Q
    |||||| ||||||||||||||| ||||||||| |  |||||  |||| ||||||||| |||  | || ||| ||||||||||||||  | ||||| ||||    
T  5939880 cttttcttcataatacaaaatcttcctcatttggaggaactacaaaactgtattggaggagggttttggggcgttttggagggttagtaagaatttttca 5939781  T
Q  205 tatttaatatatgtagctatgatattcttaaaatt 239  Q
     ||||||| ||||| | ||| ||||| ||||||||    
T  5939780 aatttaatctatgttgttataatatttttaaaatt 5939746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 239
Target Start/End: Original strand, 50948188 - 50948322
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttca 204  Q
    |||||| ||||||||||||| |||||||| || |  ||||| ||||||||||||||| |||  | || || | ||||||||| |||| | ||||| ||||    
T  50948188 cttttcttcataatacaaaaccctcctcagttggaggaactaaaaaattgtattggaggagggtttttggaaattttggaggattaataagaatttttca 50948287  T
Q  205 tatttaatatatgtagctatgatattcttaaaatt 239  Q
     ||||||| ||||| | ||| ||||| ||||||||    
T  50948288 aatttaatttatgttgttataatatttttaaaatt 50948322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 235
Target Start/End: Original strand, 29623220 - 29623348
Alignment:
Q  106 ttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcat 205  Q
    ||||| ||||||||||||| ||||||||||| ||| |||| |||| |||||||| | |||  | ||  || |||| |||||||| | ||||||||||||     
T  29623220 ttttcttcataatacaaaaccctcctcatttggga-aactcaaaagttgtattgcaggagggttttgaggggtttaggagggtttatatgaattcttcaa 29623318  T
Q  206 atttaatatatgtagctatgatattcttaa 235  Q
    ||||||||||||| | ||| ||||| ||||    
T  29623319 atttaatatatgttgttataatatttttaa 29623348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 218
Target Start/End: Original strand, 51686489 - 51686601
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttca 204  Q
    |||||| ||||||||| ||| || |||||||| || ||||| ||||||||||||||| |||  | || ||| ||||||||||||| | ||||||| ||||    
T  51686489 cttttcttcataatactaaacccccctcatttggg-gaactaaaaaattgtattggaggagggtttttgggggttttggagggtttatatgaatttttca 51686587  T
Q  205 tatttaatatatgt 218  Q
     ||||||| |||||    
T  51686588 aatttaatttatgt 51686601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 238
Target Start/End: Complemental strand, 52620915 - 52620801
Alignment:
Q  114 ataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaata 213  Q
    ||||||| ||||||||||||||| |||||||| ||||||||||||||| ||          | ||||||  ||||||| |||||||||||| ||||||||    
T  52620915 ataataccaaatcctcctcatttgggagaactcaaaaattgtattggagga----------gggttttgaggggttaatatgaattcttcaaatttaata 52620826  T
Q  214 tatgtagctatgatattcttaaaat 238  Q
    ||||| | ||| ||||| |||||||    
T  52620825 tatgttgttataatatttttaaaat 52620801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 147 - 239
Target Start/End: Original strand, 40674131 - 40674223
Alignment:
Q  147 aaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaatatatgtagctatgatattcttaaaatt 239  Q
    |||| |||||||||| |||| | || |||||||| |||| ||| | |||||||||| | ||||||||||||| | ||| ||||||||||||||    
T  40674131 aaaagttgtattggacgagagttttggggagtttgggagagtttatatgaattctttaaatttaatatatgttgttataatattcttaaaatt 40674223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 49 - 161
Target Start/End: Original strand, 46017153 - 46017264
Alignment:
Q  49 gaaggattaagcgaaagaaatagaagacattgagatgggaagctttttggagtttgcttttcgtcataatacaaaatcctcctcattttggagaacttaa 148  Q
    |||||| |||| ||||||||| |||||||||| || | ||||  ||| |||| ||  ||||  |||||||| ||||||||||| |||| |||||||| ||    
T  46017153 gaaggagtaagtgaaagaaatggaagacattgggaggagaagacttt-ggaggttaattttactcataataaaaaatcctccttatttgggagaactcaa 46017251  T
Q  149 aaattgtattgga 161  Q
    |||||||||||||    
T  46017252 aaattgtattgga 46017264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 239
Target Start/End: Complemental strand, 31178338 - 31178212
Alignment:
Q  112 tcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaa 211  Q
    |||||||| ||||||  |||||||| |||||||||||||||||||||||   ||  | || ||| ||| |||||| || | ||||||| |||| ||| ||    
T  31178338 tcataataaaaaatctccctcatttgggagaacttaaaaattgtattggggaagggt-tttgggggttatggaggatttatatgaatttttcaaattcaa 31178240  T
Q  212 tatatgtagctatgatattcttaaaatt 239  Q
    | ||||| ||||| ||||||||||||||    
T  31178239 tctatgttgctataatattcttaaaatt 31178212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 239
Target Start/End: Original strand, 38639571 - 38639695
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttca 204  Q
    |||||| ||||||||||||| ||||||||||| |  ||||| ||||||||||||||| ||          | ||||||||||||||| | ||||||||||    
T  38639571 cttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattgtattggagga----------gggttttggagggttaataagaattcttca 38639660  T
Q  205 tatttaatatatgtagctatgatattcttaaaatt 239  Q
     ||||||| ||||| | ||| ||||| ||||||||    
T  38639661 aatttaatttatgttgttataatatttttaaaatt 38639695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 239
Target Start/End: Original strand, 11500087 - 11500217
Alignment:
Q  106 ttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcat 205  Q
    ||||| |||||||| |||| ||||||||||| ||| |||| ||||||||||||||| | |  | | | |  ||||||||| ||| | || |||||||||     
T  11500087 ttttcttcataatagaaaaccctcctcatttgggataactaaaaaattgtattgga-gggcttttgaag--gttttggagagtttacattaattcttcaa 11500183  T
Q  206 atttaatatatgtagctatgatattcttaaaatt 239  Q
    ||||||||||||| | ||| ||||||||||||||    
T  11500184 atttaatatatgttgttataatattcttaaaatt 11500217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 204
Target Start/End: Complemental strand, 21777734 - 21777636
Alignment:
Q  106 ttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttca 204  Q
    ||||| |||||||||||||  ||| |||||| |||||| | ||||||||||||||| |||| | || |   ||||||||||||| | ||||||||||||    
T  21777734 ttttcttcataatacaaaactctcatcatttgggagaaatcaaaaattgtattggaggagagttttggaaggttttggagggttcacatgaattcttca 21777636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 239
Target Start/End: Complemental strand, 517729 - 517597
Alignment:
Q  106 ttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcat 205  Q
    ||||| ||||||||||||| ||||||||||| || |||| | |||||||||||| | |||  | || ||| ||||||||||||| | | ||||| ||||     
T  517729 ttttcttcataatacaaaaccctcctcatttgggggaac-tcaaaattgtattgaaggagggttttggggggttttggagggttcataagaatttttcaa 517631  T
Q  206 atttaatatatgtagctatgatattcttaaaatt 239  Q
    ||||||| ||||| | ||| ||||  ||||||||    
T  517630 atttaatttatgttgttataatatatttaaaatt 517597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 7435713 - 7435658
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattgga 161  Q
    |||||| |||||||| ||||||||||||| | ||||||||| |||||||||||||||    
T  7435713 cttttcttcataatataaaatcctcctca-tctggagaactaaaaaattgtattgga 7435658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 25754201 - 25754145
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattgga 161  Q
    |||||| ||||||||||||| ||||||||||| |  ||||| |||||||||||||||    
T  25754201 cttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattgtattgga 25754145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 37674239 - 37674183
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattgga 161  Q
    |||||| |||| |||||||| |||||||||||||  ||||| |||||||||||||||    
T  37674239 cttttcttcatgatacaaaaccctcctcattttgaggaactaaaaaattgtattgga 37674183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 53664698 - 53664642
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattgga 161  Q
    |||||| ||||||||||||| ||||||||||| |  ||||| |||||||||||||||    
T  53664698 cttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattgtattgga 53664642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 218
Target Start/End: Original strand, 27197241 - 27197347
Alignment:
Q  112 tcataatacaaaatcctcctcattttggagaact-taaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatattta 210  Q
    ||||||||||||| |||||||| ||||  |||||  |||||||||||||||||||  | || |||  |||| ||||||| | |||||||||||| |||||    
T  27197241 tcataatacaaaaccctcctca-tttgaggaactaaaaaaattgtattggatgagggttttggggtttttttgagggtttatatgaattcttcaaattta 27197339  T
Q  211 atatatgt 218  Q
    || |||||    
T  27197340 atttatgt 27197347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 239
Target Start/End: Complemental strand, 41962065 - 41961942
Alignment:
Q  116 aatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaatata 215  Q
    |||| ||||||| |||||||| || ||||| ||||||||||||||  |||  | || ||| ||| || |||||| | ||||||| |||| ||| ||| ||    
T  41962065 aataaaaaatccccctcatttgggggaactcaaaaattgtattgggggagggttttggggggttatgaagggtttatatgaatttttcaaattcaatcta 41961966  T
Q  216 tgtagctatgatattcttaaaatt 239  Q
    ||| | ||| ||||||||||||||    
T  41961965 tgttgttataatattcttaaaatt 41961942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 239
Target Start/End: Original strand, 46891403 - 46891502
Alignment:
Q  140 agaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaatatatgtagctatgatattcttaaaatt 239  Q
    |||||| |||||||||||| || |||| | || ||| ||||  |||| || | || ||||||||| ||||||||||||| | ||| ||||||||||||||    
T  46891403 agaactaaaaaattgtattagaggagagttttggggggtttgtgaggatttatataaattcttcaaatttaatatatgttgttataatattcttaaaatt 46891502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 218
Target Start/End: Complemental strand, 24242184 - 24242078
Alignment:
Q  112 tcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaa 211  Q
    |||||||| ||||||| |||||||| || ||||| ||||||||||||||  |||  | || | | ||| ||||||||| | ||||||| |||||||| ||    
T  24242184 tcataataaaaaatccccctcatttgggggaactcaaaaattgtattgggggagggttttggtgggttatggagggtttatatgaatttttcatattcaa 24242085  T
Q  212 tatatgt 218  Q
    | |||||    
T  24242084 tctatgt 24242078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 160
Target Start/End: Complemental strand, 24588381 - 24588327
Alignment:
Q  106 ttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattgg 160  Q
    ||||| |||||||||||||||| |||||||| |  ||||| ||||||||||||||    
T  24588381 ttttcttcataatacaaaatccccctcatttggaggaactcaaaaattgtattgg 24588327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 191
Target Start/End: Complemental strand, 33909048 - 33908962
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaa 191  Q
    |||||| ||||||||||||| ||||||||||| ||  |||| |||| |||||||||| |||  | || ||| ||||||||| |||||    
T  33909048 cttttcttcataatacaaaaccctcctcatttggggaaactaaaaagttgtattggaggagggttttggggggttttggagagttaa 33908962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 239
Target Start/End: Original strand, 36637870 - 36637916
Alignment:
Q  193 atgaattcttcatatttaatatatgtagctatgatattcttaaaatt 239  Q
    |||||||||||| ||||||||||||| | ||| ||||||||||||||    
T  36637870 atgaattcttcaaatttaatatatgttgttataatattcttaaaatt 36637916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 158
Target Start/End: Original strand, 38515239 - 38515285
Alignment:
Q  112 tcataatacaaaatcctcctcattttggagaacttaaaaattgtatt 158  Q
    |||||||| ||||||| |||||||| |||||||| ||||||||||||    
T  38515239 tcataataaaaaatccccctcatttgggagaactcaaaaattgtatt 38515285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 239
Target Start/End: Complemental strand, 48656995 - 48656949
Alignment:
Q  193 atgaattcttcatatttaatatatgtagctatgatattcttaaaatt 239  Q
    ||||||||| || ||||||||||| | ||||||||||||||||||||    
T  48656995 atgaattctacaaatttaatatattttgctatgatattcttaaaatt 48656949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 159
Target Start/End: Complemental strand, 49855951 - 49855853
Alignment:
Q  61 gaaagaaatagaagacattgagatgggaagctttttggagtttgcttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattg 159  Q
    |||||||||||| ||||||||||  ||||| |||| || |||   ||||| ||||||||||||||  | ||||||| |  ||||| |||||||||||||    
T  49855951 gaaagaaatagatgacattgagagaggaaggttttgggggttcatttttcttcataatacaaaataattctcatttagaggaactcaaaaattgtattg 49855853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 14271801 - 14271854
Alignment:
Q  112 tcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgag 165  Q
    |||||||||||||| ||| | |||||| |||||| |||||||||||| ||||||    
T  14271801 tcataatacaaaattctctttattttgaagaactaaaaaattgtattagatgag 14271854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 50535194 - 50535145
Alignment:
Q  112 tcataatacaaaatcctcctcattttggagaacttaaaaattgtattgga 161  Q
    ||||||||| ||| ||||||||||| || ||||| |||||||||||||||    
T  50535194 tcataatactaaaccctcctcatttaggggaactaaaaaattgtattgga 50535145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 2420711 - 2420775
Alignment:
Q  175 gagttttggagggttaaaatgaattcttcatatttaatatatgtagctatgatattcttaaaatt 239  Q
    ||||||||||||||| | ||||||| |||| ||| ||| ||||| | ||| ||||||||||||||    
T  2420711 gagttttggagggtttatatgaatttttcaaattcaatctatgttgttataatattcttaaaatt 2420775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 239
Target Start/End: Original strand, 7661048 - 7661152
Alignment:
Q  135 tttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaatatatgtagctatgatattctta 234  Q
    ||||||||||| ||||||| ||||||  |||| | || | | ||| |||||| || | ||||||| |||| ||| ||||||||| | ||| |||||||||    
T  7661048 tttggagaactcaaaaattatattgggggagagttttggagggttatggaggatttatatgaatttttcaaattcaatatatgttgttataatattctta 7661147  T
Q  235 aaatt 239  Q
    |||||    
T  7661148 aaatt 7661152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 160
Target Start/End: Original strand, 36796412 - 36796460
Alignment:
Q  112 tcataatacaaaatcctcctcattttggagaacttaaaaattgtattgg 160  Q
    |||||||| ||||||| |||||||| || ||||| ||||||||||||||    
T  36796412 tcataataaaaaatccccctcatttgggggaactcaaaaattgtattgg 36796460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 37545234 - 37545294
Alignment:
Q  179 tttggagggttaaaatgaattcttcatatttaatatatgtagctatgatattcttaaaatt 239  Q
    ||||||||||| | ||||||| |||| || |||||||||| ||||| | ||||||||||||    
T  37545234 tttggagggtttatatgaattattcaaatataatatatgttgctataaaattcttaaaatt 37545294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 41099825 - 41099770
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattgga 161  Q
    |||||| ||| ||||||||| |||||| |||| |||||||| |||||||||||||||    
T  41099825 cttttcttcacaatacaaaaccctccttatttgggagaact-aaaaattgtattgga 41099770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 218
Target Start/End: Complemental strand, 45571041 - 45570929
Alignment:
Q  106 ttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcat 205  Q
    ||||| ||||||||  ||| ||||||||||| || ||||| ||||||||||||||| ||| || || ||| | |||  |||||| | ||||||| ||||     
T  45571041 ttttcttcataatattaaaccctcctcatttgggggaactaaaaaattgtattggaggaggatttttggggggtttaaagggtttatatgaattattcaa 45570942  T
Q  206 atttaatatatgt 218  Q
     |||||| |||||    
T  45570941 gtttaatttatgt 45570929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 160
Target Start/End: Complemental strand, 49683093 - 49683045
Alignment:
Q  112 tcataatacaaaatcctcctcattttggagaacttaaaaattgtattgg 160  Q
    |||||||| ||||||| |||||||| || ||||| ||||||||||||||    
T  49683093 tcataataaaaaatccccctcatttgggggaactcaaaaattgtattgg 49683045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 105 - 239
Target Start/End: Complemental strand, 43572643 - 43572509
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttca 204  Q
    |||||| ||||||||||||| ||||||||||| |  ||||| ||||||||||||||| |||| | || ||| ||||||||||||||| | ||||||||||    
T  43572643 cttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattgtattggaggagagttttggggggttttggagggttaataagaattcttca 43572544  T
Q  205 tatttaatatatgtagctatgatattcttaaaatt 239  Q
     ||||||| ||||| | ||| ||||| ||||||||    
T  43572543 aatttaatttatgttgttataatatttttaaaatt 43572509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 105 - 239
Target Start/End: Original strand, 11515026 - 11515160
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttca 204  Q
    |||||| ||||||||||||| ||||||||||| |  ||||| ||||||||||||||| |||  | || ||| ||||||||||||||| | ||||||||||    
T  11515026 cttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattgtattggaggagggttttggggggttttggagggttaataagaattcttca 11515125  T
Q  205 tatttaatatatgtagctatgatattcttaaaatt 239  Q
     ||||||| ||||| | ||| ||||| ||||||||    
T  11515126 aatttaatttatgttgttataatatttttaaaatt 11515160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 105 - 239
Target Start/End: Original strand, 37194249 - 37194383
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttca 204  Q
    |||||| ||||||||||||| ||||||||||| |  ||||| ||||||||||||||| |||  | || ||| ||||||||||||||| | ||||||||||    
T  37194249 cttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattgtattggaggagggtttttgggggttttggagggttaataagaattcttca 37194348  T
Q  205 tatttaatatatgtagctatgatattcttaaaatt 239  Q
     ||||||| ||||| | ||| ||||| ||||||||    
T  37194349 aatttaatttatgttgttataatatttttaaaatt 37194383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 106 - 218
Target Start/End: Original strand, 40211986 - 40212098
Alignment:
Q  106 ttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcat 205  Q
    ||||| ||||||||||||| ||||||||||| |  ||||| |||||||||||||||||||  | || ||| ||||||||||||||| | ||||||| ||     
T  40211986 ttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattgtattggatgagggttttggggggttttggagggttaataagaattctacaa 40212085  T
Q  206 atttaatatatgt 218  Q
    ||||||| |||||    
T  40212086 atttaatttatgt 40212098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 105 - 239
Target Start/End: Original strand, 26905786 - 26905920
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttca 204  Q
    |||||| |||| |||||||| ||||||||||| |  ||||| ||||||||||||||| |||  | || ||| ||||||||||||||| | ||||| ||||    
T  26905786 cttttcttcatgatacaaaaccctcctcatttggaggaactaaaaaattgtattggaggagggttttggggggttttggagggttaataagaatttttca 26905885  T
Q  205 tatttaatatatgtagctatgatattcttaaaatt 239  Q
     ||||||| ||||| | ||| ||||| ||||||||    
T  26905886 aatttaatctatgttgttataatatttttaaaatt 26905920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 116 - 239
Target Start/End: Complemental strand, 11522267 - 11522145
Alignment:
Q  116 aatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaatata 215  Q
    |||| |||| ||||||||||| || ||||| |||| |||||||||| |||  | || ||| |||| |||||||| | |||||||||||| ||||||||||    
T  11522267 aatataaaaccctcctcatttggg-gaactaaaaagttgtattggaggagggttttggggggtttgggagggtttatatgaattcttcaaatttaatata 11522169  T
Q  216 tgtagctatgatattcttaaaatt 239  Q
    ||| | ||| ||||||||||||||    
T  11522168 tgttgttataatattcttaaaatt 11522145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 112 - 239
Target Start/End: Complemental strand, 36567370 - 36567243
Alignment:
Q  112 tcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaa 211  Q
    |||||||| ||||||  |||||||| || ||||| ||||||||||||||  |||| | |||||| ||| ||||||||| | ||||||| |||| ||| ||    
T  36567370 tcataataaaaaatctccctcatttgggggaactcaaaaattgtattgggggagagttttagggggttatggagggtttatatgaatttttcaaattcaa 36567271  T
Q  212 tatatgtagctatgatattcttaaaatt 239  Q
    | ||||| | ||| ||||||||||||||    
T  36567270 tctatgttgttataatattcttaaaatt 36567243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 239
Target Start/End: Complemental strand, 13018577 - 13018443
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttca 204  Q
    |||||| ||||||||||||| ||||||||||| |  ||||| ||||| ||||||||  |||  | || ||| ||||||||||||||| | ||||| ||||    
T  13018577 cttttcttcataatacaaaaccctcctcatttggaggaactaaaaaaatgtattgggggagggttttggggggttttggagggttaataagaatttttca 13018478  T
Q  205 tatttaatatatgtagctatgatattcttaaaatt 239  Q
     ||||||| ||||| | ||| ||||| ||||||||    
T  13018477 aatttaatctatgttgttattatatttttaaaatt 13018443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 106 - 235
Target Start/End: Complemental strand, 16519187 - 16519058
Alignment:
Q  106 ttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcat 205  Q
    ||||| ||||||||||||||||||||||||| ||  |||| |||| ||||||| || |||  |||| ||| ||||| ||||||| | |||||||| |||     
T  16519187 ttttcttcataatacaaaatcctcctcatttggggaaactaaaaagttgtattagaggagggtattggggggtttttgagggtttatatgaattcatcaa 16519088  T
Q  206 atttaatatatgtagctatgatattcttaa 235  Q
    ||||| | ||||| | ||| ||||||||||    
T  16519087 atttattttatgttgttataatattcttaa 16519058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 113 - 239
Target Start/End: Original strand, 39205006 - 39205133
Alignment:
Q  113 cataatacaaaatcctcctcattttggag-aacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaa 211  Q
    |||||||| ||| ||||||||||| || | |||| ||||||||||||||| ||| || ||||||  |||||||||||| | |||||||||| | ||||||    
T  39205006 cataatactaaaccctcctcatttggggggaactaaaaaattgtattggaggaggattttaggggtttttggagggtttatatgaattcttgaaatttaa 39205105  T
Q  212 tatatgtagctatgatattcttaaaatt 239  Q
    | ||||| | |||  |||| ||||||||    
T  39205106 tctatgttgttatattatttttaaaatt 39205133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 239
Target Start/End: Complemental strand, 9087562 - 9087430
Alignment:
Q  106 ttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcat 205  Q
    ||||| ||| |||| |||| ||||||||||| || ||||| ||||||||||| ||| ||| || || ||| |||| |||| ||| | ||||||||||||     
T  9087562 ttttcttcaaaatataaaaccctcctcatttggg-gaactgaaaaattgtatcggaggaggattttggggggtttgggagagtttatatgaattcttcaa 9087464  T
Q  206 atttaatatatgtagctatgatattcttaaaatt 239  Q
    ||||||||||||| |  || ||||| ||||||||    
T  9087463 atttaatatatgttgtcataatattattaaaatt 9087430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 239
Target Start/End: Original strand, 21626105 - 21626241
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggag--ttttggagggttaaaatgaattctt 202  Q
    |||||| ||||||||||||| | ||||||||| || ||||| |||| ||||||||||  ||  | ||  ||||  |||||||||||||| | ||||||||    
T  21626105 cttttcttcataatacaaaaccatcctcatttgggggaactaaaaagttgtattggagaagggttttgtggagggttttggagggttaataagaattctt 21626204  T
Q  203 catatttaatatatgtagctatgatattcttaaaatt 239  Q
    || ||||||| ||||| | ||| ||||| ||||||||    
T  21626205 caaatttaatctatgttgttataatatttttaaaatt 21626241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 239
Target Start/End: Complemental strand, 3039038 - 3038912
Alignment:
Q  112 tcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaa 211  Q
    |||||||| ||||||| |||||||| || ||||| ||||||||||||||  |||  | || ||||||| ||||||||| | || |||| |||| ||| ||    
T  3039038 tcataataaaaaatccccctcatttgggggaactcaaaaattgtattgggggag-gtttttgggagttatggagggtttatatcaatttttcaaattcaa 3038940  T
Q  212 tatatgtagctatgatattcttaaaatt 239  Q
    | ||||| | ||| ||||||||||||||    
T  3038939 tctatgttgttataatattcttaaaatt 3038912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 161
Target Start/End: Complemental strand, 5322217 - 5322162
Alignment:
Q  106 ttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattgga 161  Q
    ||||| ||||||||||||||||||||||||| || ||||| ||||| |||||||||    
T  5322217 ttttcttcataatacaaaatcctcctcatttgggggaactcaaaaactgtattgga 5322162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 105 - 239
Target Start/End: Complemental strand, 28539524 - 28539391
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttca 204  Q
    |||||| ||||||| | |||  |||||||||| || || || ||||||||||||||||||||   || |||  |||||||||||| | ||||||||||||    
T  28539524 cttttcttcataatgctaaactctcctcatttggggga-ctaaaaaattgtattggatgagagctttgggggattttggagggtttatatgaattcttca 28539426  T
Q  205 tatttaatatatgtagctatgatattcttaaaatt 239  Q
     ||||||| ||||| | |||  |||| ||||||||    
T  28539425 aatttaatctatgttgttatattatttttaaaatt 28539391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 236
Target Start/End: Complemental strand, 31584863 - 31584734
Alignment:
Q  106 ttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcat 205  Q
    ||||| ||| |||| |||| ||||||||||| || ||||| ||||||| ||||| | ||| || || ||| ||||  ||||||| | ||||| ||||||     
T  31584863 ttttcttcaaaatataaaaccctcctcatttggg-gaactaaaaaattatattgaaggaggattttggggggtttgagagggtttatatgaagtcttcaa 31584765  T
Q  206 atttaatatatgtagctatgatattcttaaa 236  Q
    ||||||||||||| | ||| |||||||||||    
T  31584764 atttaatatatgttgttataatattcttaaa 31584734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 1364815 - 1364871
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattgga 161  Q
    |||||| ||||||||||||| ||||||||||| |  ||||| |||||||||||||||    
T  1364815 cttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattgtattgga 1364871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 218
Target Start/End: Original strand, 21834924 - 21835036
Alignment:
Q  106 ttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcat 205  Q
    ||||| |||||||| ||||  |||||||||| || ||||| |||| ||||||| || |||  | || || |||||||||||||| | |||||||  |||     
T  21834924 ttttcttcataatataaaactctcctcatttaggggaactaaaaagttgtattagaggagggttttgggcagttttggagggtttatatgaattaatcaa 21835023  T
Q  206 atttaatatatgt 218  Q
    |||||||||||||    
T  21835024 atttaatatatgt 21835036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 161
Target Start/End: Original strand, 4003411 - 4003466
Alignment:
Q  106 ttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattgga 161  Q
    ||||| |||||||||||||  |||||||||| || ||||| |||||||||||||||    
T  4003411 ttttcttcataatacaaaactctcctcatttgggggaactcaaaaattgtattgga 4003466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 239
Target Start/End: Original strand, 4041953 - 4042080
Alignment:
Q  112 tcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaa 211  Q
    |||||||| ||||||| ||||||||    ||||| ||||||||||||||  |||  | || ||| ||| ||||||||| | ||||||| |||| ||| ||    
T  4041953 tcataataaaaaatccccctcatttgaaggaactcaaaaattgtattgggggagggttttggggggttatggagggtttatatgaatttttcaaattcaa 4042052  T
Q  212 tatatgtagctatgatattcttaaaatt 239  Q
    | ||||| | ||| ||||||||||||||    
T  4042053 tctatgttgttataatattcttaaaatt 4042080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 239
Target Start/End: Complemental strand, 13766030 - 13765904
Alignment:
Q  112 tcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaa 211  Q
    |||||||| ||||| | |||||||| || ||||| ||||||||||||||  |||  | || ||| ||| ||||||||| | ||||||| |||| ||| ||    
T  13766030 tcataataaaaaattcccctcatttggg-gaactcaaaaattgtattgggggagggttttggggggttgtggagggtttatatgaatttttcaaattcaa 13765932  T
Q  212 tatatgtagctatgatattcttaaaatt 239  Q
    | ||||| | ||| ||||||||||||||    
T  13765931 tctatgttgttataatattcttaaaatt 13765904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 161
Target Start/End: Complemental strand, 30072159 - 30072105
Alignment:
Q  106 ttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattgga 161  Q
    ||||| ||| |||| |||||||||||||||| ||||||| ||||||||||||||||    
T  30072159 ttttcttcaaaatataaaatcctcctcatttgggagaac-taaaaattgtattgga 30072105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 161
Target Start/End: Original strand, 39819881 - 39819935
Alignment:
Q  106 ttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattgga 161  Q
    ||||| || ||||||||||||||||||| ||||| ||||| |||||||||||||||    
T  39819881 ttttcttcctaatacaaaatcctcctca-tttggggaactaaaaaattgtattgga 39819935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 239
Target Start/End: Original strand, 40357446 - 40357573
Alignment:
Q  112 tcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaa 211  Q
    |||||||| ||||||| |||||||| || ||||| ||||||||||||||  |||  | || ||| ||| |||| |||| | ||||||| |||| ||  ||    
T  40357446 tcataataaaaaatccccctcatttgggggaactcaaaaattgtattgggagagggttttggggggttatggaaggtttatatgaatttttcaaatccaa 40357545  T
Q  212 tatatgtagctatgatattcttaaaatt 239  Q
    | ||||| | ||| ||||||||||||||    
T  40357546 tctatgttgttataatattcttaaaatt 40357573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 18826301 - 18826191
Alignment:
Q  129 cctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaatatatgtagctatgata 228  Q
    |||||||| || ||||| ||||||||||||||  |||  | || ||| ||| ||||||||| | ||||||| |||| ||| ||| ||||| | ||| |||    
T  18826301 cctcatttgggggaactcaaaaattgtattgggggagggttttggggggttatggagggtttatatgaatttttcaaattcaatttatgttgttataata 18826202  T
Q  229 ttcttaaaatt 239  Q
    |||||||||||    
T  18826201 ttcttaaaatt 18826191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 212
Target Start/End: Complemental strand, 26599347 - 26599241
Alignment:
Q  106 ttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcat 205  Q
    ||||| |||||||||||   ||||||||||| || ||||| | ||||||||||||| |||  | || ||  ||||||||||||| | |||| |||||||     
T  26599347 ttttcttcataatacaattccctcctcatttgggggaactcacaaattgtattggaggagggttttgggaggttttggagggtttacatgagttcttcaa 26599248  T
Q  206 atttaat 212  Q
    |||||||    
T  26599247 atttaat 26599241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 161
Target Start/End: Original strand, 34757589 - 34757643
Alignment:
Q  107 tttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattgga 161  Q
    |||| ||||||||||||| ||||||||||| |  ||||| |||||||||||||||    
T  34757589 tttcttcataatacaaaaccctcctcatttggaggaactaaaaaattgtattgga 34757643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 239
Target Start/End: Complemental strand, 3737323 - 3737201
Alignment:
Q  106 ttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcat 205  Q
    ||||| ||||||||||||||| ||||||||| | |||||| ||||||||||||     |||| |     ||||||| ||| ||| | || |||||||||     
T  3737323 ttttcttcataatacaaaatcatcctcattt-gaagaactcaaaaattgtatt-----agaaaa-----gagttttagagtgtttacataaattcttcaa 3737235  T
Q  206 atttaatatatgtagctatgatattcttaaaatt 239  Q
    ||||||||||||||| ||| ||||| ||||||||    
T  3737234 atttaatatatgtagttataatatttttaaaatt 3737201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 4666190 - 4666251
Alignment:
Q  178 ttttggagggttaaaatgaattcttcatatttaatatatgtagctatgatattcttaaaatt 239  Q
    ||||||| |||||| ||||||| |||| ||||||||||| | | ||| ||||||||||||||    
T  4666190 ttttggaaggttaatatgaatttttcaaatttaatatatcttgttataatattcttaaaatt 4666251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 41100196 - 41100148
Alignment:
Q  112 tcataatacaaaatcctcctcattttggagaacttaaaaattgtattgga 161  Q
    ||||||||||||| |||||||| ||||| ||||| |||||||||||||||    
T  41100196 tcataatacaaaaccctcctca-tttggggaactaaaaaattgtattgga 41100148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 219
Target Start/End: Original strand, 567391 - 567482
Alignment:
Q  127 ctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaatatatgta 219  Q
    |||||||||| || ||||| |||||||||||| || || | | || ||  ||||||||||||| | |||||||||||| ||||||| ||||||    
T  567391 ctcctcatttagg-gaactcaaaaattgtattagaggaaagtttttggaggttttggagggtttacatgaattcttcaaatttaatctatgta 567482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 239
Target Start/End: Complemental strand, 8555865 - 8555741
Alignment:
Q  115 taatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaatat 214  Q
    ||||| ||||||| |||||||| || ||||| ||||||||||||||  |||  | || ||| ||| | ||||||| | ||||||| |||| ||| ||| |    
T  8555865 taataaaaaatccccctcatttgggggaactaaaaaattgtattgggggagggttttggggggttatagagggtttatatgaatttttcaaattcaatct 8555766  T
Q  215 atgtagctatgatattcttaaaatt 239  Q
    || | | ||| ||||||||||||||    
T  8555765 atattgttataatattcttaaaatt 8555741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 218
Target Start/End: Complemental strand, 12941896 - 12941784
Alignment:
Q  106 ttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcat 205  Q
    ||||| ||| |||| |||||||| ||||||| || |||||  |||||| ||||||| |||| | || | ||||||   || ||| | ||||||||||||     
T  12941896 ttttcttcaaaatataaaatccttctcatttgggggaactagaaaattatattggaggagagttttggagagtttgaaagagtttatatgaattcttcaa 12941797  T
Q  206 atttaatatatgt 218  Q
    |||||||||||||    
T  12941796 atttaatatatgt 12941784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 14385136 - 14385196
Alignment:
Q  179 tttggagggttaaaatgaattcttcatatttaatatatgtagctatgatattcttaaaatt 239  Q
    ||||||||||| | ||||| |||||| ||||||| ||||||| ||| ||||| ||||||||    
T  14385136 tttggagggtttacatgaaatcttcaaatttaatctatgtagttataatatttttaaaatt 14385196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 160
Target Start/End: Original strand, 32243464 - 32243512
Alignment:
Q  112 tcataatacaaaatcctcctcattttggagaacttaaaaattgtattgg 160  Q
    |||||||| |||||| ||||||||| || ||||| ||||||||||||||    
T  32243464 tcataataaaaaatcatcctcatttgggggaactcaaaaattgtattgg 32243512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 105 - 238
Target Start/End: Original strand, 36269725 - 36269858
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttca 204  Q
    |||||| ||||||||||||| ||||||||||| || ||||| ||||||||||||||| |||| | |  ||| |||||||||| || | ||||||||||||    
T  36269725 cttttcttcataatacaaaaccctcctcatttgggggaactaaaaaattgtattggaggagagtttcggggggttttggaggatttatatgaattcttca 36269824  T
Q  205 tatttaatatatgtagctatgatattcttaaaat 238  Q
     ||| ||| ||||| ||||| |||||||||||||    
T  36269825 aattcaatctatgttgctataatattcttaaaat 36269858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 105 - 239
Target Start/End: Complemental strand, 37649715 - 37649581
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttca 204  Q
    |||||| | ||||||||||| ||||||||||| |  ||||| ||||||||||||||| |||  | || ||||||||||||||||||| | ||||||||||    
T  37649715 cttttctttataatacaaaaccctcctcatttggaggaactaaaaaattgtattggaggagggtttttgggagttttggagggttaataagaattcttca 37649616  T
Q  205 tatttaatatatgtagctatgatattcttaaaatt 239  Q
     ||||||| ||||| | ||| ||||| ||||||||    
T  37649615 aatttaatttatgttgttataatatttttaaaatt 37649581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 105 - 239
Target Start/End: Complemental strand, 41817398 - 41817264
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttca 204  Q
    |||||| ||||||||||||| |||| |||||| |  ||||| ||||||||||||||| |||  | || ||||||||||||||||||| | ||||||||||    
T  41817398 cttttcttcataatacaaaaccctcatcatttggaggaactaaaaaattgtattggaggagggttttggggagttttggagggttaataagaattcttca 41817299  T
Q  205 tatttaatatatgtagctatgatattcttaaaatt 239  Q
     ||||||| ||||| | ||| ||||| ||||||||    
T  41817298 aatttaatttatgttgttataatatttttaaaatt 41817264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 105 - 239
Target Start/End: Original strand, 29092068 - 29092202
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttca 204  Q
    |||||| ||||||||||||| ||||||||||| |  ||||| ||||||||||||||| |||| | || ||| ||||||||||||||| | |||||||| |    
T  29092068 cttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattgtattggaggagagttttggggggttttggagggttaataagaattcttta 29092167  T
Q  205 tatttaatatatgtagctatgatattcttaaaatt 239  Q
     ||||||| ||| | | ||| ||||| ||||||||    
T  29092168 aatttaatttatattgttataatatttttaaaatt 29092202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 105 - 239
Target Start/End: Original strand, 5584487 - 5584621
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttca 204  Q
    |||||| ||||||||||||| ||||||||||| |  ||||| ||||||||||||||| |||  | || |||  ||| |||||||||| | ||||||||||    
T  5584487 cttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattgtattggaggagggttttggggtttttgggagggttaataagaattcttca 5584586  T
Q  205 tatttaatatatgtagctatgatattcttaaaatt 239  Q
     ||||||| ||||| | ||| ||||| ||||||||    
T  5584587 aatttaatttatgttgttataatatttttaaaatt 5584621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 239
Target Start/End: Original strand, 2909100 - 2909233
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttca 204  Q
    |||||| |||||||| |||| ||| ||||||| |  ||||| ||||||||||||||| |||  | || ||| ||||||||||||||| | ||||||||||    
T  2909100 cttttcttcataatagaaaaccctactcatttggaggaactaaaaaattgtattggaggagggttttggggggttttggagggttaataagaattcttca 2909199  T
Q  205 tatttaatatatgtagctatgatattcttaaaatt 239  Q
     ||||||| ||||| | ||| ||||| ||||||||    
T  2909200 aatttaatttatgttgttataatatt-ttaaaatt 2909233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 239
Target Start/End: Original strand, 46001548 - 46001682
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttca 204  Q
    |||||| |||||||| |||| ||||||||||| |  ||||| |||||||||||| || |||| | || ||| |||||| |||||||| | ||||||||||    
T  46001548 cttttcttcataatataaaaccctcctcatttggaggaactaaaaaattgtatttgaggagagttttggggggttttgtagggttaataagaattcttca 46001647  T
Q  205 tatttaatatatgtagctatgatattcttaaaatt 239  Q
     ||||||| ||||| | ||| || || ||||||||    
T  46001648 aatttaatttatgttgttataatgtttttaaaatt 46001682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 105 - 218
Target Start/End: Original strand, 36886851 - 36886964
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttca 204  Q
    |||||| ||||||||| ||| || ||||||||||| ||||| |||||||| |||||| |||  | || ||| ||||||||||||| | ||||||| ||||    
T  36886851 cttttcttcataatactaaacccccctcattttggggaactaaaaaattgcattggaggagggtttttgggggttttggagggtttatatgaatttttca 36886950  T
Q  205 tatttaatatatgt 218  Q
     ||||||| |||||    
T  36886951 aatttaatctatgt 36886964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 112 - 239
Target Start/End: Complemental strand, 1688308 - 1688182
Alignment:
Q  112 tcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaa 211  Q
    |||||||| ||||||| |||||||| || ||||| ||||||||||||||  |||| | || ||| ||| ||||||||| | ||||||| |||| ||| ||    
T  1688308 tcataataaaaaatccccctcatttggg-gaactcaaaaattgtattgggggagagttttggggggttatggagggtttatatgaatttttcaaattcaa 1688210  T
Q  212 tatatgtagctatgatattcttaaaatt 239  Q
    | ||||| ||||| ||||| ||||||||    
T  1688209 tttatgttgctataatatttttaaaatt 1688182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 112 - 239
Target Start/End: Original strand, 17688329 - 17688455
Alignment:
Q  112 tcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaa 211  Q
    |||||||| ||||||  |||||||| || ||||| ||||||||||||||  |||| | || ||| ||| ||||||||| | ||||||| |||| ||| ||    
T  17688329 tcataataaaaaatctccctcatttgggggaactcaaaaattgtattgggggagagttttgggg-gttatggagggtttatatgaatttttcaaattcaa 17688427  T
Q  212 tatatgtagctatgatattcttaaaatt 239  Q
    ||||||| | ||| ||||||||||||||    
T  17688428 tatatgttgttataatattcttaaaatt 17688455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 177 - 239
Target Start/End: Complemental strand, 30543390 - 30543328
Alignment:
Q  177 gttttggagggttaaaatgaattcttcatatttaatatatgtagctatgatattcttaaaatt 239  Q
    ||||||||||||| | |||||||||||| ||||||| ||| ||| ||||||||||||||||||    
T  30543390 gttttggagggtttacatgaattcttcaaatttaatctatatagttatgatattcttaaaatt 30543328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 49102994 - 49102937
Alignment:
Q  182 ggagggttaaaatgaattcttcatatttaatatatgtagctatgatattcttaaaatt 239  Q
    |||||||| | |||||||||||| ||||||||||||| ||||| ||||||||||||||    
T  49102994 ggagggtttatatgaattcttcaaatttaatatatgttgctataatattcttaaaatt 49102937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 106 - 239
Target Start/End: Complemental strand, 41432863 - 41432727
Alignment:
Q  106 ttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagtt----ttggagggttaaaatgaattct 201  Q
    ||||| |||||||| |||| |||||||| ||||| | ||| |||| |||||||||| |||  | || ||| |||    |||||||||| | |||||||||    
T  41432863 ttttcttcataatataaaaccctcctca-tttgggggactcaaaatttgtattggaggagggttttggggggttttggttggagggtttacatgaattct 41432765  T
Q  202 tcatatttaatatatgtagctatgatattcttaaaatt 239  Q
    ||| ||||||| ||||||| ||| ||||||||||||||    
T  41432764 tcaaatttaatctatgtagttataatattcttaaaatt 41432727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 239
Target Start/End: Complemental strand, 17760574 - 17760450
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttca 204  Q
    |||||| ||||||||||||| ||||||||||| |  ||||| |||||||||||||||           ||| ||||||||||||||| | ||||||||||    
T  17760574 cttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattgtattgga----------ggggggttttggagggttaataagaattcttca 17760485  T
Q  205 tatttaatatatgtagctatgatattcttaaaatt 239  Q
     ||||||| ||||| | ||| ||||| ||||||||    
T  17760484 aatttaatctatgttgttataatatttttaaaatt 17760450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 239
Target Start/End: Complemental strand, 47206515 - 47206389
Alignment:
Q  112 tcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaa 211  Q
    |||||||| ||||||| |||||||| || ||||| ||||||||||||||  ||  || || ||| ||| ||||||||| | ||||||| |||| ||| ||    
T  47206515 tcataataaaaaatccccctcatttgggggaactcaaaaattgtattgggggaagat-tttgggggttatggagggtttatatgaatttttcaaattcaa 47206417  T
Q  212 tatatgtagctatgatattcttaaaatt 239  Q
    | ||||| | ||| ||||||||||||||    
T  47206416 tctatgttgttataatattcttaaaatt 47206389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 239
Target Start/End: Complemental strand, 47905781 - 47905654
Alignment:
Q  112 tcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaa 211  Q
    |||||||| ||||| | |||||||| || ||||| ||||||||||||||  |||  | || ||| ||| ||||||||| | ||||||| |||| ||| ||    
T  47905781 tcataataaaaaattcccctcatttgggggaactcaaaaattgtattgggggagggtttttgggggttatggagggtttatatgaatttttcaaattcaa 47905682  T
Q  212 tatatgtagctatgatattcttaaaatt 239  Q
    | ||||| | ||| ||||||||||||||    
T  47905681 tctatgttgttataatattcttaaaatt 47905654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 114 - 239
Target Start/End: Complemental strand, 8156428 - 8156302
Alignment:
Q  114 ataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatatt-agggagttttggagggttaaaatgaattcttcatatttaat 212  Q
    |||||| ||||||| |||||||| || ||||||||||||||||||||  |||| | ||  ||| ||| ||||||||| | || |||| |||| ||| |||    
T  8156428 ataataaaaaatccccctcatttgggggaacttaaaaattgtattgggggagagttttgggggggttatggagggtttatatcaatttttcaaattcaat 8156329  T
Q  213 atatgtagctatgatattcttaaaatt 239  Q
     ||||| | ||| ||||||||||||||    
T  8156328 ctatgttgttataatattcttaaaatt 8156302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 236
Target Start/End: Original strand, 34738299 - 34738429
Alignment:
Q  106 ttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcat 205  Q
    ||||| |||||||||||||||||| ||||||  | ||||| | || ||  |||||| ||| || |||||||| |||||||| || | |||||||||| |     
T  34738299 ttttcttcataatacaaaatcctcttcatttaagggaactcataagtttgattggaggaggattttagggagctttggaggatttatatgaattctttaa 34738398  T
Q  206 atttaatatatgtagctatgatattcttaaa 236  Q
    ||||||| ||||| | | |||| ||||||||    
T  34738399 atttaatctatgttgttgtgatcttcttaaa 34738429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 239
Target Start/End: Original strand, 6015455 - 6015547
Alignment:
Q  147 aaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaatatatgtagctatgatattcttaaaatt 239  Q
    |||||||||||||||||||  | ||| || ||||  ||||||| | |||||||||||| ||||||||||||| | |||  ||||| |||||||    
T  6015455 aaaaattgtattggatgagggttttaaggggtttgagagggtttatatgaattcttcaaatttaatatatgttgttatagtattcgtaaaatt 6015547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 237
Target Start/End: Original strand, 32287563 - 32287694
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttca 204  Q
    |||||| || ||||||| ||||||| ||||||  | ||||| |||||||||||||||||||  | ||  || ||||||||| ||| | || | |||||||    
T  32287563 cttttcttcttaatacacaatcctcttcatttgag-gaactaaaaaattgtattggatgagggttttgaggggttttggagagtttatatcatttcttca 32287661  T
Q  205 tatttaatatatgtagctatgatattcttaaaa 237  Q
     ||||||||||||| | ||| ||||| ||||||    
T  32287662 aatttaatatatgttgatataatatttttaaaa 32287694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 7412630 - 7412681
Alignment:
Q  115 taatacaaaatcctcctcattttggagaacttaaaaattgtattggatgaga 166  Q
    ||||||||||||| |||||||  |||||| ||||||||||||||||| ||||    
T  7412630 taatacaaaatccacctcattagggagaatttaaaaattgtattggaggaga 7412681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 239
Target Start/End: Complemental strand, 23871555 - 23871428
Alignment:
Q  112 tcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaa 211  Q
    |||||||| ||||||  |||||||| || ||||| ||||||||||||||  |||  | || ||| |||  |||||||| | ||||||| |||| ||| ||    
T  23871555 tcataataaaaaatctccctcatttgggggaactcaaaaattgtattggcggagggttttggggggttacggagggtttatatgaatttttcaaattcaa 23871456  T
Q  212 tatatgtagctatgatattcttaaaatt 239  Q
    | ||||| | ||| ||||||||||||||    
T  23871455 tctatgttgttataatattcttaaaatt 23871428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 239
Target Start/End: Original strand, 27499973 - 27500100
Alignment:
Q  112 tcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaa 211  Q
    |||||||| ||||||| |||||||| || ||||| ||||||||||| ||  |||  | || ||| ||| |||||| || | ||||||| |||| ||| ||    
T  27499973 tcataataaaaaatccccctcatttgggggaactcaaaaattgtatcgggggagggttttggggggttatggaggatttatatgaatttttcaaattcaa 27500072  T
Q  212 tatatgtagctatgatattcttaaaatt 239  Q
    | ||||| | ||| ||||||||||||||    
T  27500073 tctatgttgttataatattcttaaaatt 27500100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 161
Target Start/End: Complemental strand, 28848887 - 28848832
Alignment:
Q  106 ttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattgga 161  Q
    ||||| |||||| |||||| ||||||||||| || ||||| |||||||||||||||    
T  28848887 ttttcttcataacacaaaaccctcctcatttgggggaactcaaaaattgtattgga 28848832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 239
Target Start/End: Original strand, 33991530 - 33991657
Alignment:
Q  112 tcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaa 211  Q
    |||||||| ||||||| |||||||| || ||||| ||||||||||||||  |||  | || ||| ||| ||||||||| | ||||||| || | ||  ||    
T  33991530 tcataataaaaaatccccctcatttgggggaactcaaaaattgtattgggggagggttttggggggttatggagggtttatatgaattttttaaatcaaa 33991629  T
Q  212 tatatgtagctatgatattcttaaaatt 239  Q
    | ||||| | ||| ||||||||||||||    
T  33991630 tctatgttgttataatattcttaaaatt 33991657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 238
Target Start/End: Original strand, 39508762 - 39508885
Alignment:
Q  115 taatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaatat 214  Q
    |||||||||||||  ||||||| || ||| | ||||||||||||||  |||  | |||||| ||||||||| ||| | ||||||| |||| ||| ||| |    
T  39508762 taatacaaaatccctctcatttgggggaattaaaaaattgtattgggggagggttttagggggttttggagagtttatatgaatttttcaaattcaatct 39508861  T
Q  215 atgtagctatgatattcttaaaat 238  Q
    || | | ||| |||||||||||||    
T  39508862 attttgttataatattcttaaaat 39508885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 212
Target Start/End: Original strand, 7915496 - 7915602
Alignment:
Q  106 ttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcat 205  Q
    ||||| |||||||| | || |||||||||||||| | | | ||||||||||||||| |||  | || ||  ||| ||||||||| | ||||||||||||     
T  7915496 ttttcttcataatatagaaccctcctcattttgggggattcaaaaattgtattggaggagggttttgggaggttctggagggtttacatgaattcttcaa 7915595  T
Q  206 atttaat 212  Q
    |||||||    
T  7915596 atttaat 7915602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 238
Target Start/End: Original strand, 13255333 - 13255459
Alignment:
Q  112 tcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaa 211  Q
    |||||||| ||||||| |||||||| || ||||| |||||||||| |||  |||  | || ||| ||| | ||||||| | ||||||| |||| ||| ||    
T  13255333 tcataataaaaaatccccctcatttgggggaactcaaaaattgtagtgggagagggttttggggggttatagagggtttatatgaatttttcaaattcaa 13255432  T
Q  212 tatatgtagctatgatattcttaaaat 238  Q
    | ||||| | ||| |||||||||||||    
T  13255433 tctatgttgttataatattcttaaaat 13255459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 239
Target Start/End: Original strand, 27255253 - 27255315
Alignment:
Q  177 gttttggagggttaaaatgaattcttcatatttaatatatgtagctatgatattcttaaaatt 239  Q
    ||||||||||||||| | ||||| |||| ||||||| ||||| ||||| ||||| ||||||||    
T  27255253 gttttggagggttaataagaatttttcaaatttaatctatgttgctattatatttttaaaatt 27255315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 239
Target Start/End: Complemental strand, 35619525 - 35619479
Alignment:
Q  193 atgaattcttcatatttaatatatgtagctatgatattcttaaaatt 239  Q
    |||||||||||| ||||||||||||| | ||| ||||||||||||||    
T  35619525 atgaattcttcaaatttaatatatgttgttataatattcttaaaatt 35619479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 239
Target Start/End: Complemental strand, 43036401 - 43036288
Alignment:
Q  116 aatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattaggga-gttttggagggttaaaatgaattcttcatatttaatat 214  Q
    |||| |||| ||||||||||| |||||||| ||||||||||||||           ||||| |||| |||||||| | |||||||||||| ||||||| |    
T  43036401 aatataaaaccctcctcatttgggagaactaaaaaattgtattgg-----------agggaggtttgggagggtttatatgaattcttcaaatttaatct 43036313  T
Q  215 atgtagctatgatattcttaaaatt 239  Q
    |||| | ||| ||||||||||||||    
T  43036312 atgttgttataatattcttaaaatt 43036288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 239
Target Start/End: Original strand, 12293799 - 12293928
Alignment:
Q  112 tcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatatt-agggagttttggagggttaaaatgaa-ttcttcatattt 209  Q
    |||||||| ||||||| |||||||| || ||||| ||||||||||||||  |||  | ||  ||| ||| ||||||||| | ||||| || |||| |||     
T  12293799 tcataataaaaaatccccctcatttgggggaactcaaaaattgtattgggggagggttttgggggggttatggagggtttatatgaattttttcaaattc 12293898  T
Q  210 aatatatgtagctatgatattcttaaaatt 239  Q
    ||||||||| | ||| ||||||||||||||    
T  12293899 aatatatgttgttataatattcttaaaatt 12293928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 161
Target Start/End: Original strand, 50476527 - 50476576
Alignment:
Q  112 tcataatacaaaatcctcctcattttggagaacttaaaaattgtattgga 161  Q
    |||||||||||||||| ||||||||  | ||||| |||||||||||||||    
T  50476527 tcataatacaaaatccccctcatttgagggaactcaaaaattgtattgga 50476576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 209
Target Start/End: Complemental strand, 4204877 - 4204774
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttca 204  Q
    |||||| ||||||||||||| ||| ||||||| || ||||| |||||||| |||| |  ||| | || ||| ||||||||||||| | |||||| |||||    
T  4204877 cttttcttcataatacaaaa-cctactcatttgggggaactaaaaaattgcattgaagcagagtttttgggggttttggagggtttatatgaatgcttca 4204779  T
Q  205 tattt 209  Q
     ||||    
T  4204778 aattt 4204774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 239
Target Start/End: Original strand, 6537970 - 6538074
Alignment:
Q  135 tttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaatatatgtagctatgatattctta 234  Q
    ||||||||| | ||||| ||||||||| ||| || ||| || ||||  ||  ||| | ||||| |||||| ||||||||||||| | ||| |||||||||    
T  6537970 tttggagaattaaaaaaatgtattggaggaggattttatggggtttgagaatgtttatatgaactcttcaaatttaatatatgttgttataatattctta 6538069  T
Q  235 aaatt 239  Q
    |||||    
T  6538070 aaatt 6538074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 159
Target Start/End: Complemental strand, 30543450 - 30543398
Alignment:
Q  107 tttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattg 159  Q
    |||| ||||||||||||||| ||||||| | || ||||| |||||||||||||    
T  30543450 tttcttcataatacaaaatcttcctcatgtgggggaactcaaaaattgtattg 30543398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 34154427 - 34154371
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattgga 161  Q
    |||||| ||||||||||||| | ||||||||| |  ||||| |||||||||||||||    
T  34154427 cttttcttcataatacaaaaccttcctcatttggaggaactaaaaaattgtattgga 34154371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 150
Target Start/End: Original strand, 40243354 - 40243398
Alignment:
Q  106 ttttcgtcataatacaaaatcctcctcattttggagaacttaaaa 150  Q
    ||||| ||||||||||||| ||| |||||||||||||||| ||||    
T  40243354 ttttcttcataatacaaaacccttctcattttggagaactaaaaa 40243398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 52068236 - 52068180
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattgga 161  Q
    |||||| |||||||||||||  |||||||||| |  ||||| |||||||||||||||    
T  52068236 cttttcttcataatacaaaactctcctcatttggaggaactaaaaaattgtattgga 52068180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 105 - 239
Target Start/End: Complemental strand, 15749048 - 15748914
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttca 204  Q
    |||||| ||||||||||||| ||||||||||| |  ||||| |||||||||||||||||||    || ||| ||||||||||||||| | ||||||||||    
T  15749048 cttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattgtattggatgagggattttgggggttttggagggttaataagaattcttca 15748949  T
Q  205 tatttaatatatgtagctatgatattcttaaaatt 239  Q
     ||||||| ||||| | ||| ||||| ||||||||    
T  15748948 aatttaatttatgttgttataatatttttaaaatt 15748914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 106 - 239
Target Start/End: Original strand, 1277921 - 1278054
Alignment:
Q  106 ttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttg-gagggttaaaatgaattcttca 204  Q
    ||||| ||| |||| |||| | |||||||||||| ||||| |||||||||||||||||||| | || || || |||| ||||||| | ||||||||||||    
T  1277921 ttttcttcaaaatataaaaccatcctcattttggggaactaaaaaattgtattggatgagagt-ttcggaaggtttgagagggtttatatgaattcttca 1278019  T
Q  205 tatttaatatatgtagctatgatattcttaaaatt 239  Q
     ||||||||||||| | ||| ||||||||||||||    
T  1278020 aatttaatatatgttgttataatattcttaaaatt 1278054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 239
Target Start/End: Complemental strand, 16805666 - 16805532
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttca 204  Q
    |||||| ||||||||||||| | || |||||| |  ||||| ||||||||||||||| |||  | || ||| ||||||||||||||| | |||||||| |    
T  16805666 cttttcttcataatacaaaaccttcttcatttggaggaactaaaaaattgtattggaggagggttttggggggttttggagggttaataagaattcttaa 16805567  T
Q  205 tatttaatatatgtagctatgatattcttaaaatt 239  Q
     ||||||| ||||| | ||| ||||| ||||||||    
T  16805566 aatttaatttatgttgttataatatttttaaaatt 16805532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 112 - 239
Target Start/End: Complemental strand, 28437634 - 28437507
Alignment:
Q  112 tcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaa 211  Q
    |||||||| ||||||| |||||||| || ||||| ||||||||||||||| | | || || ||| ||| ||||||||| | || |||| |||| ||| ||    
T  28437634 tcataataaaaaatccccctcatttgggggaactcaaaaattgtattggaggtggattttggggggttatggagggtttatatcaatttttcaaattcaa 28437535  T
Q  212 tatatgtagctatgatattcttaaaatt 239  Q
    | ||||| | ||| ||||||||||||||    
T  28437534 tctatgttgttataatattcttaaaatt 28437507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 105 - 239
Target Start/End: Complemental strand, 45940499 - 45940375
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttca 204  Q
    |||||| ||||||||||||| ||||||||||| |  ||||| |||||||||||||||  |||          ||||||||||||||| | ||||||||||    
T  45940499 cttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattgtattggagtaga----------gttttggagggttaataagaattcttca 45940410  T
Q  205 tatttaatatatgtagctatgatattcttaaaatt 239  Q
     ||||||| ||||| ||||| ||||| ||||||||    
T  45940409 aatttaatttatgttgctataatatttttaaaatt 45940375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 14676285 - 14676346
Alignment:
Q  178 ttttggagggttaaaatgaattcttcatatttaatatatgtagctatgatattcttaaaatt 239  Q
    |||||||||||| | |||||||||||| ||||||| ||||||| ||| ||||||||||||||    
T  14676285 ttttggagggtttacatgaattcttcaaatttaatctatgtagttataatattcttaaaatt 14676346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 212
Target Start/End: Complemental strand, 2826346 - 2826239
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttca 204  Q
    |||||| ||||||||| ||| ||||||||||| || ||||| ||||||||||||||| |||  | || |||  ||||||| | || | ||||||||||||    
T  2826346 cttttcttcataatactaaaccctcctcatttgggggaactaaaaaattgtattggaggagggttttgggggattttggaagctttatatgaattcttca 2826247  T
Q  205 tatttaat 212  Q
     |||||||    
T  2826246 aatttaat 2826239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 239
Target Start/End: Complemental strand, 23466087 - 23465965
Alignment:
Q  114 ataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaata 213  Q
    ||||||||||| |||||||||||  | ||||| | ||||||||||||| | |    || ||| |||||| |||||| | ||| |||||||| |||||||     
T  23466087 ataatacaaaaccctcctcatttgagggaactcacaaattgtattggaggggt---tttgggggttttgaagggtttacatggattcttcacatttaatt 23465991  T
Q  214 tatgtagctatgatattcttaaaatt 239  Q
    ||||||| ||| ||||||||||||||    
T  23465990 tatgtagttataatattcttaaaatt 23465965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 239
Target Start/End: Complemental strand, 38505433 - 38505309
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttca 204  Q
    |||||| ||||||||||||| ||||||||||| || |||||  |||||||||||||| ||          | ||||||||||||| | ||||||||||||    
T  38505433 cttttcttcataatacaaaaccctcctcatttgggggaactataaaattgtattggagga----------gggttttggagggtttatatgaattcttca 38505344  T
Q  205 tatttaatatatgtagctatgatattcttaaaatt 239  Q
     ||||||| ||||| | ||| ||||| ||||||||    
T  38505343 aatttaatctatgttgttataatatttttaaaatt 38505309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 239
Target Start/End: Complemental strand, 41002343 - 41002216
Alignment:
Q  112 tcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaa 211  Q
    |||||||| ||||| | |||||||| || ||||| ||||||| ||||||  |||  | |||||| ||| ||||||||| | ||||||| |||| ||| ||    
T  41002343 tcataataaaaaattcccctcatttgggggaactcaaaaattatattgggggagggttttagggggttatggagggtttatatgaatttttcaaattcaa 41002244  T
Q  212 tatatgtagctatgatattcttaaaatt 239  Q
    | ||||| | ||| ||||||||||||||    
T  41002243 tctatgttgttataatattcttaaaatt 41002216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 212
Target Start/End: Original strand, 13697265 - 13697371
Alignment:
Q  106 ttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcat 205  Q
    ||||| ||||||||||||| ||||||||||| || ||||| |||| |||||||||| ||   |  | || |||||||||||||| | || |||||||||     
T  13697265 ttttcttcataatacaaaaccctcctcatttgggggaactaaaaagttgtattggaagacggttgtgggaagttttggagggtttatattaattcttcaa 13697364  T
Q  206 atttaat 212  Q
    |||||||    
T  13697365 atttaat 13697371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 105 - 239
Target Start/End: Complemental strand, 32650490 - 32650356
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttca 204  Q
    |||||| |||| || ||||| ||||||||||| |  ||||| |||||||| |||||| ||| || || ||| ||||||||| ||||| |  ||||||| |    
T  32650490 cttttcttcattattcaaaaccctcctcatttggaggaactaaaaaattgcattggaggaggattttggggggttttggagagttaataataattcttta 32650391  T
Q  205 tatttaatatatgtagctatgatattcttaaaatt 239  Q
     ||||||| ||||| | ||| ||||| ||||||||    
T  32650390 aatttaatttatgttgttataatatttttaaaatt 32650356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 239
Target Start/End: Complemental strand, 33187988 - 33187812
Alignment:
Q  61 gaaagaaatagaagacattgagatgggaagctttttggagtttgcttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattgg 160  Q
    |||| |||||||||||||||  | | || |||||  || | ||| ||||| ||| |||| |||||| |||||||||  | ||||| ||||||||||||||    
T  33187988 gaaaaaaatagaagacattggaaggagaggctttggggggcttgtttttcttcaaaatataaaatcatcctcatttgag-gaactaaaaaattgtattgg 33187890  T
Q  161 atgagaatattagggagttttggagggttaaaatgaattcttcatatttaatatatgtagctatgatattcttaaaatt 239  Q
    | |||| | || ||| ||||  ||||||| | |||||||||||| || |||||||| | | ||| ||||||||||||||    
T  33187889 aggagagttttgggg-gtttgagagggtttatatgaattcttcaaatataatatatattgttataatattcttaaaatt 33187812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 239
Target Start/End: Complemental strand, 43348266 - 43348204
Alignment:
Q  177 gttttggagggttaaaatgaattcttcatatttaatatatgtagctatgatattcttaaaatt 239  Q
    ||||||||||||||| |||||||||||| ||||||| ||||| | ||| ||||| ||||||||    
T  43348266 gttttggagggttaatatgaattcttcaaatttaatctatgttgttataatatttttaaaatt 43348204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 158
Target Start/End: Original strand, 43741687 - 43741740
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtatt 158  Q
    |||||| |||||||||||||  |||||||||| |||||||| ||||||||||||    
T  43741687 cttttcttcataatacaaaactctcctcatttgggagaactcaaaaattgtatt 43741740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 236
Target Start/End: Complemental strand, 3658603 - 3658479
Alignment:
Q  112 tcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaa 211  Q
    |||||||| ||||||| |||||||| || ||||| ||||||||||||||  |||  | |||||| ||| ||||||| | | ||||||| |||| ||| ||    
T  3658603 tcataataaaaaatccccctcatttgggggaactcaaaaattgtattgggggagggttttagggggttatggagggattatatgaatttttcaaattcaa 3658504  T
Q  212 tatatgtagctatgatattcttaaa 236  Q
    | ||||| | ||| | |||||||||    
T  3658503 tctatgttgttataacattcttaaa 3658479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 239
Target Start/End: Complemental strand, 33406724 - 33406597
Alignment:
Q  112 tcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaa 211  Q
    |||||||| ||||||| ||||||||  | ||||| ||||||||||||||  |||  | || ||| ||| ||||||||| | || |||| |||| ||| ||    
T  33406724 tcataataaaaaatccccctcatttgagggaactcaaaaattgtattgggagagggttttggggggttatggagggtttatatcaatttttcaaattcaa 33406625  T
Q  212 tatatgtagctatgatattcttaaaatt 239  Q
    | ||||| | ||| ||||||||||||||    
T  33406624 tctatgttgttataatattcttaaaatt 33406597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 161
Target Start/End: Original strand, 38137924 - 38137979
Alignment:
Q  106 ttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattgga 161  Q
    ||||| ||||||||||||||||||||||||| || || || |||| ||||||||||    
T  38137924 ttttcttcataatacaaaatcctcctcatttgggggagctcaaaatttgtattgga 38137979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 239
Target Start/End: Original strand, 30081422 - 30081484
Alignment:
Q  177 gttttggagggttaaaatgaattcttcatatttaatatatgtagctatgatattcttaaaatt 239  Q
    ||||||||||||| |  ||||||||||| ||||||||||||| | ||| ||||||||| ||||    
T  30081422 gttttggagggtttatgtgaattcttcaaatttaatatatgttgttataatattcttataatt 30081484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 165
Target Start/End: Complemental strand, 4058238 - 4058178
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggag-aacttaaaaattgtattggatgag 165  Q
    |||||| ||||||||||||| ||||||| ||| |||| |||| |||||||||||||||||||    
T  4058238 cttttcttcataatacaaaaccctcctcgttt-ggagcaactaaaaaattgtattggatgag 4058178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 19644290 - 19644343
Alignment:
Q  112 tcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgag 165  Q
    |||||||| ||||||| ||| |||| || ||||| |||||||||||||||||||    
T  19644290 tcataataaaaaatcccccttatttaggggaactcaaaaattgtattggatgag 19644343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 239
Target Start/End: Complemental strand, 23620883 - 23620758
Alignment:
Q  114 ataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaata 213  Q
    |||||| ||||||| |||||||| || ||||| |||||||||||| |  |||  | || ||| ||| |||| |||| | ||||||| |||| ||| |||     
T  23620883 ataataaaaaatccccctcatttgggggaactcaaaaattgtatttggggagggttttggggggttatggatggtttatatgaatttttcaaattcaatc 23620784  T
Q  214 tatgtagctatgatattcttaaaatt 239  Q
    ||||| | ||| ||||||||||||||    
T  23620783 tatgttgttataatattcttaaaatt 23620758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 204
Target Start/End: Original strand, 425319 - 425419
Alignment:
Q  106 ttttcgtcataatacaaaatcctcc-tcattttggagaacttaaaaattgtattggatgagaatatt-agggagttttggagggttaaaatgaattcttc 203  Q
    ||||| ||||||||||||| || || | |||| || ||||| ||||| ||||||||| |||||| || | ||  |||||||||||||| |||||||||||    
T  425319 ttttcttcataatacaaaaacccccctaatttgggggaactcaaaaagtgtattggaggagaattttgaagggtttttggagggttaatatgaattcttc 425418  T
Q  204 a 204  Q
    |    
T  425419 a 425419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 164
Target Start/End: Original strand, 4125931 - 4125988
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatga 164  Q
    |||||| ||||||||| |||||||||||||||  | ||||| || |||||||||||||||    
T  4125931 cttttcttcataatactaaatcctcctcattt--gggaactaaacaattgtattggatga 4125988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 33872210 - 33872154
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattgga 161  Q
    |||||| ||||||||| ||| ||||||||||| || ||||| | |||||||||||||    
T  33872210 cttttcttcataatactaaaccctcctcatttgggggaactaacaaattgtattgga 33872154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 166
Target Start/End: Complemental strand, 39856454 - 39856403
Alignment:
Q  114 ataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgaga 166  Q
    ||||||||||||| ||||||||| ||| |||| |||| |||||||||||||||    
T  39856454 ataatacaaaatcatcctcatttcgga-aactaaaaagttgtattggatgaga 39856403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 44487424 - 44487360
Alignment:
Q  97 ggagtttgcttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattgga 161  Q
    ||||||| |||||| ||| |||| ||||| |||||||||| |  ||||| |||||||||||||||    
T  44487424 ggagtttacttttcttcaaaatataaaattctcctcatttagaggaactaaaaaattgtattgga 44487360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 105 - 239
Target Start/End: Original strand, 1567263 - 1567397
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttca 204  Q
    |||||| ||||||||||||| ||||||||||| |  ||||| |||||||||||||||||||    || ||| ||||||||||||||| | ||||||||||    
T  1567263 cttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattgtattggatgagggattttgggggttttggagggttaataagaattcttca 1567362  T
Q  205 tatttaatatatgtagctatgatattcttaaaatt 239  Q
     ||||||| ||||| | ||| ||||| ||||||||    
T  1567363 aatttaatttatgttgttataatatttttaaaatt 1567397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 105 - 239
Target Start/End: Complemental strand, 33590426 - 33590294
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttca 204  Q
    |||||| ||||||||||||| ||||||||||| || || || |||||||||||||||||||  | || ||| ||||||||||||||| ||||||||||||    
T  33590426 cttttcttcataatacaaaaccctcctcatttggg-gagctaaaaaattgtattggatgagggttttgggg-gttttggagggttaatatgaattcttca 33590329  T
Q  205 tatttaatatatgtagctatgatattcttaaaatt 239  Q
     ||||||| |||||   ||| ||||| ||||||||    
T  33590328 aatttaatctatgttattataatatttttaaaatt 33590294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 127 - 238
Target Start/End: Original strand, 32222007 - 32222117
Alignment:
Q  127 ctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaatatatgtagctatga 226  Q
    |||||||||| |  ||||| ||||||||||||||| |||| | ||||||| |||||||||||| | |||||||||||| ||||||  ||||| ||||| |    
T  32222007 ctcctcatttggaggaactaaaaaattgtattggaggagagttttaggga-ttttggagggtttatatgaattcttcaaatttaaactatgttgctataa 32222105  T
Q  227 tattcttaaaat 238  Q
     |||||||||||    
T  32222106 cattcttaaaat 32222117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 137 - 239
Target Start/End: Complemental strand, 2502433 - 2502331
Alignment:
Q  137 tggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaatatatgtagctatgatattcttaaa 236  Q
    ||||||||| ||||||||||||||||||| || ||  || ||||  || |||| | |||||||||||| ||||||||||| | | ||| |||||||||||    
T  2502433 tggagaactaaaaaattgtattggatgaggattttgtggggtttgagacggtttatatgaattcttcaaatttaatatatattgttataatattcttaaa 2502334  T
Q  237 att 239  Q
    |||    
T  2502333 att 2502331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 239
Target Start/End: Complemental strand, 26574487 - 26574360
Alignment:
Q  112 tcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaa 211  Q
    |||||||| ||||||| |||||||| || ||||| ||||||||||||||  |||  | || ||| ||| |||| |||| | ||||||| |||| ||| ||    
T  26574487 tcataataaaaaatccccctcatttgggggaactcaaaaattgtattgggggagggttttggggggttatggatggtttatatgaatttttcaaattcaa 26574388  T
Q  212 tatatgtagctatgatattcttaaaatt 239  Q
    | ||||| | ||| ||||||||||||||    
T  26574387 tctatgttgttataatattcttaaaatt 26574360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 239
Target Start/End: Complemental strand, 32719475 - 32719351
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttca 204  Q
    |||||| ||||||||||||| ||||||||||| |  ||||| ||||||||||||||| ||          | ||||||||||||||| | ||||||||||    
T  32719475 cttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattgtattggagga----------gggttttggagggttaataagaattcttca 32719386  T
Q  205 tatttaatatatgtagctatgatattcttaaaatt 239  Q
     ||||||| ||||| | ||| ||||| ||||||||    
T  32719385 aatttaatttatgttgttataatatttttaaaatt 32719351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 239
Target Start/End: Original strand, 24734871 - 24734996
Alignment:
Q  112 tcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaa 211  Q
    |||||||| ||||||| |||||||| || ||||| |||  |||||||||  |||  | |||||| ||| ||||||||| | ||||||| |||| ||| ||    
T  24734871 tcataataaaaaatccccctcatttgggggaactcaaa--ttgtattgggggagggttttagggggttatggagggtttatatgaatttttcaaattcaa 24734968  T
Q  212 tatatgtagctatgatattcttaaaatt 239  Q
    | ||||| | ||| ||||||||||||||    
T  24734969 tctatgttgttataatattcttaaaatt 24734996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 239
Target Start/End: Complemental strand, 23095220 - 23095093
Alignment:
Q  112 tcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaa 211  Q
    |||||||| ||||||| |||||||| || ||||| ||||||||||| ||  |||  | || ||| ||| ||||| ||| | ||||||| |||| ||| ||    
T  23095220 tcataataaaaaatccccctcatttgggggaactaaaaaattgtatggggggagggttttggggggttatggagagtttatatgaatttttcaaattcaa 23095121  T
Q  212 tatatgtagctatgatattcttaaaatt 239  Q
    | ||||| | ||| ||||||||||||||    
T  23095120 tctatgttgttataatattcttaaaatt 23095093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 239
Target Start/End: Complemental strand, 29241925 - 29241798
Alignment:
Q  112 tcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaa 211  Q
    |||||||| ||||||| |||||||| ||  |||| ||||||||||||||  |||  | |||||| ||| ||||||||| | | ||||| |||| ||| ||    
T  29241925 tcataataaaaaatccccctcatttggggtaactcaaaaattgtattgggggagggttttagggggttatggagggtttatacgaatttttcaaattcaa 29241826  T
Q  212 tatatgtagctatgatattcttaaaatt 239  Q
    | |||||   ||| ||||||||||||||    
T  29241825 tctatgttcttataatattcttaaaatt 29241798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 239
Target Start/End: Original strand, 12779496 - 12779629
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttca 204  Q
    |||||| || || ||||||| ||| || |||| || ||||| |||| |||||||||| |||  | || | || |||||||||||||| | ||||||||||    
T  12779496 cttttcttcgtactacaaaacccttcttatttgggggaactaaaaagttgtattggaggagggttttggaga-ttttggagggttaataagaattcttca 12779594  T
Q  205 tatttaatatatgtagctatgatattcttaaaatt 239  Q
     ||||||| ||||| | ||| ||||| ||||||||    
T  12779595 aatttaatctatgttgttataatatttttaaaatt 12779629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 239
Target Start/End: Complemental strand, 20381893 - 20381831
Alignment:
Q  177 gttttggagggttaaaatgaattcttcatatttaatatatgtagctatgatattcttaaaatt 239  Q
    |||||| |||||| | ||||||||||||  |||||||||||| | ||| ||||||||||||||    
T  20381893 gttttgaagggtttatatgaattcttcaattttaatatatgttgttataatattcttaaaatt 20381831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 239
Target Start/End: Complemental strand, 26481214 - 26481096
Alignment:
Q  121 aaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaatatatgtag 220  Q
    ||||||| |||||||| || || || ||||||||||||||  ||| || || || |||| ||||||||| | ||||||| |||| ||| ||| || || |    
T  26481214 aaaatccccctcatttaggggagctcaaaaattgtattgggggaggattttgggaagttatggagggtttatatgaatttttcaaattcaatctacgttg 26481115  T
Q  221 ctatgatattcttaaaatt 239  Q
     ||| ||||||||||||||    
T  26481114 ttataatattcttaaaatt 26481096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 166
Target Start/End: Complemental strand, 20820629 - 20820568
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgaga 166  Q
    |||||| ||||||||| |||  |||||| ||| || ||||| ||||||||||||||||||||    
T  20820629 cttttcttcataatactaaactctcctcgtttgggggaactaaaaaattgtattggatgaga 20820568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 237
Target Start/End: Original strand, 13380585 - 13380645
Alignment:
Q  177 gttttggagggttaaaatgaattcttcatatttaatatatgtagctatgatattcttaaaa 237  Q
    ||||||||| ||| | || ||||||||| ||||||| ||||||| ||| ||||||||||||    
T  13380585 gttttggagcgtttacataaattcttcaaatttaatctatgtagttataatattcttaaaa 13380645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 105 - 239
Target Start/End: Complemental strand, 12708933 - 12708799
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttca 204  Q
    |||||| ||||||||||||| ||||||||||| |  ||||| ||||||||||||||| |||  | || ||| ||||||||||||||| | ||||||||||    
T  12708933 cttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattgtattggaggagggttttggggggttttggagggttaataagaattcttca 12708834  T
Q  205 tatttaatatatgtagctatgatattcttaaaatt 239  Q
     ||||||| ||||| | ||| ||||| ||||||||    
T  12708833 aatttaatttatgttgttataatatttttaaaatt 12708799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 105 - 239
Target Start/End: Complemental strand, 30198870 - 30198736
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttca 204  Q
    |||||| ||||||||||||| ||||||||||| |  ||||| ||||||||||||||| |||  | ||  |||||||||||||||||| | ||||||||||    
T  30198870 cttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattgtattggaggagggttttgaggagttttggagggttaataagaattcttca 30198771  T
Q  205 tatttaatatatgtagctatgatattcttaaaatt 239  Q
     ||||||| ||||| | ||| ||||| ||||||||    
T  30198770 aatttaatttatgttgttataatatttttaaaatt 30198736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 112 - 239
Target Start/End: Complemental strand, 38136926 - 38136799
Alignment:
Q  112 tcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaa 211  Q
    ||||||||||||| ||| ||||||| |  ||||| ||||||||||||||| |||  | ||  |||||||||||||||||| | |||||||||| ||||||    
T  38136926 tcataatacaaaacccttctcatttggaggaactaaaaaattgtattggaggagggttttgaggagttttggagggttaataagaattcttcaaatttaa 38136827  T
Q  212 tatatgtagctatgatattcttaaaatt 239  Q
    | ||||| | ||| ||||| ||||||||    
T  38136826 tttatgttgttataatatttttaaaatt 38136799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 106 - 186
Target Start/End: Original strand, 21081333 - 21081413
Alignment:
Q  106 ttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagg 186  Q
    ||||| |||||| |||||| ||||||||||| ||  ||||||||||||||||||||||||| | || ||||||||||||||    
T  21081333 ttttcttcataaaacaaaaccctcctcatttggggtaacttaaaaattgtattggatgagagttttggggagttttggagg 21081413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 105 - 239
Target Start/End: Complemental strand, 28175563 - 28175429
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatatt-agggagttttggagggttaaaatgaattcttc 203  Q
    |||||| ||||||||||||||||||||||||| |  ||||| ||||||||||| ||| |||  | || ||||| |||||||||||||| | ||||||||     
T  28175563 cttttcttcataatacaaaatcctcctcatttggaggaactaaaaaattgtataggaggagggttttgaggga-ttttggagggttaataagaattcttt 28175465  T
Q  204 atatttaatatatgtagctatgatattcttaaaatt 239  Q
    | ||||||| ||||| | ||| ||||| ||||||||    
T  28175464 aaatttaatttatgttgttataatatttttaaaatt 28175429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 239
Target Start/End: Original strand, 16318599 - 16318733
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttca 204  Q
    |||||| ||||| ||||||| ||||||||||| |  ||||| ||||||||||||||| |||    || ||| ||||||||||||||| | ||||| ||||    
T  16318599 cttttcttcatattacaaaaccctcctcatttggaggaactaaaaaattgtattggaggagggattttgggggttttggagggttaataagaattattca 16318698  T
Q  205 tatttaatatatgtagctatgatattcttaaaatt 239  Q
     ||||||| ||||| | ||| ||||| ||||||||    
T  16318699 aatttaatttatgttgttataatatttttaaaatt 16318733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 106 - 239
Target Start/End: Original strand, 42650619 - 42650752
Alignment:
Q  106 ttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcat 205  Q
    ||||| ||| |||| |||| ||||||||||| || ||||| ||||||||||||||| |||  | || ||  |||| ||| |||| | ||||||||||||     
T  42650619 ttttcttcaaaatataaaaccctcctcatttgggggaactaaaaaattgtattggaggagggttttgggaggtttgggatggtttatatgaattcttcaa 42650718  T
Q  206 atttaatatatgtagctatgatattcttaaaatt 239  Q
    ||||||| ||||| | ||| ||||||||||||||    
T  42650719 atttaatttatgtcgttataatattcttaaaatt 42650752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 112 - 239
Target Start/End: Complemental strand, 7182283 - 7182156
Alignment:
Q  112 tcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaa 211  Q
    |||||||| ||||||| |||||||| || ||||| ||||||||||||||  |||  | || ||| ||| ||||||||| | ||||||| |||| ||| ||    
T  7182283 tcataataaaaaatccccctcatttgggggaactcaaaaattgtattgggggagggttttggggggttatggagggtttatatgaatttttcaaattcaa 7182184  T
Q  212 tatatgtagctatgatattcttaaaatt 239  Q
    | ||||| | ||| ||||||||||||||    
T  7182183 tctatgttgttataatattcttaaaatt 7182156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 137 - 239
Target Start/End: Original strand, 27143192 - 27143294
Alignment:
Q  137 tggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaatatatgtagctatgatattcttaaa 236  Q
    ||||||||| ||||||||||||||||||| || ||  || ||||  || |||| | |||||||||||| ||||||||||| | | ||| |||||||||||    
T  27143192 tggagaactaaaaaattgtattggatgaggattttgtggggtttgagacggtttatatgaattcttcaaatttaatatatattgttataatattcttaaa 27143291  T
Q  237 att 239  Q
    |||    
T  27143292 att 27143294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 235
Target Start/End: Original strand, 11976820 - 11976949
Alignment:
Q  106 ttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcat 205  Q
    ||||| |||||||||||||   | |||||||  | ||||| |||| ||||||||||||||  | |  ||||||||||||||||| | ||||||| || |     
T  11976820 ttttcttcataatacaaaacatttctcatttaagggaactaaaaagttgtattggatgaggttttaggggagttttggagggtttatatgaattttttaa 11976919  T
Q  206 atttaatatatgtagctatgatattcttaa 235  Q
    ||||||||||||| | ||| ||||||||||    
T  11976920 atttaatatatgttgttataatattcttaa 11976949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 115 - 239
Target Start/End: Complemental strand, 15498882 - 15498759
Alignment:
Q  115 taatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaatat 214  Q
    ||||||| || ||||||||||| || ||||| |||||||||||||||||||  | || ||  ||||||||||||| | |||||||||| | ||||||| |    
T  15498882 taatacataaccctcctcatttggg-gaactcaaaaattgtattggatgagggttttgggcggttttggagggtttacatgaattctttaaatttaatct 15498784  T
Q  215 atgtagctatgatattcttaaaatt 239  Q
    |  ||| ||| ||||||| ||||||    
T  15498783 aaatagttataatattctaaaaatt 15498759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 49936497 - 49936553
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattgga 161  Q
    |||||| |||||||||||||||||||| |||| || ||||| |||||||||||||||    
T  49936497 cttttcttcataatacaaaatcctcctaatttgggggaactaaaaaattgtattgga 49936553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 147 - 239
Target Start/End: Complemental strand, 52555056 - 52554964
Alignment:
Q  147 aaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaatatatgtagctatgatattcttaaaatt 239  Q
    |||||||||||||||||||| | || || || |||| |||||| | |||||||||| | ||||||  ||||||| ||| ||||||||||||||    
T  52555056 aaaaattgtattggatgagagttttgggaaggtttgaagggtttatatgaattctttaaatttaacctatgtagttataatattcttaaaatt 52554964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 239
Target Start/End: Complemental strand, 29114332 - 29114208
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttca 204  Q
    |||||| ||||||||||||| ||||||||||| |  ||||| ||||||||||||||| ||          | ||||||||||||||| | ||||||||||    
T  29114332 cttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattgtattggagga----------gggttttggagggttaataagaattcttca 29114243  T
Q  205 tatttaatatatgtagctatgatattcttaaaatt 239  Q
     ||||||| ||||| | ||| ||||| ||||||||    
T  29114242 aatttaatttatgttgttataatatttttaaaatt 29114208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 239
Target Start/End: Original strand, 31530008 - 31530135
Alignment:
Q  112 tcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaa 211  Q
    |||||||| |||||||||||||||| || ||||| ||||||||||||||  |||  | || ||| ||| ||||| ||| | || |||| |||| ||| ||    
T  31530008 tcataataaaaaatcctcctcatttgggggaactcaaaaattgtattgggggagggttttggggggttatggagagtttatattaatttttcaaattcaa 31530107  T
Q  212 tatatgtagctatgatattcttaaaatt 239  Q
    | ||||| | ||| ||||||||||||||    
T  31530108 tctatgttgttataatattcttaaaatt 31530135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 105 - 139
Target Start/End: Original strand, 43793414 - 43793448
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttgg 139  Q
    |||||||||||||||||||||||||||||||||||    
T  43793414 cttttcgtcataatacaaaatcctcctcattttgg 43793448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 239
Target Start/End: Original strand, 13269936 - 13270069
Alignment:
Q  106 ttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcat 205  Q
    ||||| |||||||| ||||||  |||||||| |||||||| |||||||||||||   |||  | || ||| ||| ||| ||||| | ||||||| ||||     
T  13269936 ttttcttcataataaaaaatctccctcatttgggagaactcaaaaattgtattgtgggagggttttggggggttatggggggtttatatgaatttttcaa 13270035  T
Q  206 atttaatatatgtagctatgatattcttaaaatt 239  Q
    ||| ||| ||||| | ||| ||||||||||||||    
T  13270036 attcaatctatgttgttataatattcttaaaatt 13270069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 28880046 - 28880107
Alignment:
Q  178 ttttggagggttaaaatgaattcttcatatttaatatatgtagctatgatattcttaaaatt 239  Q
    ||||||||| || | |||||||||||| ||||||||||||| | ||| ||||||||||||||    
T  28880046 ttttggaggatttatatgaattcttcaaatttaatatatgttgttataatattcttaaaatt 28880107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 239
Target Start/End: Complemental strand, 46670043 - 46669910
Alignment:
Q  106 ttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcat 205  Q
    ||||| ||| |||| |||| |||||||||||  | ||||| |||||||||||| || || | | || || ||| |  ||||||| | |||||||||| |     
T  46670043 ttttcttcaaaatataaaaccctcctcatttgagggaactaaaaaattgtattagaagaaagttttgggaagtgtgagagggtttatatgaattctttaa 46669944  T
Q  206 atttaatatatgtagctatgatattcttaaaatt 239  Q
    ||||||||||||| | ||| ||||||||||||||    
T  46669943 atttaatatatgttgttataatattcttaaaatt 46669910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 55509931 - 55509992
Alignment:
Q  177 gttttggagggttaaaatgaattcttcatatttaatatatgtagctatgatattcttaaaat 238  Q
    ||||||||||||| | |||||||||||| ||||||| ||||| ||||| ||||| |||||||    
T  55509931 gttttggagggtttatatgaattcttcaaatttaatctatgttgctataatatttttaaaat 55509992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 239
Target Start/End: Original strand, 30307355 - 30307485
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttca 204  Q
    |||||| ||| |||| |||||||||||||||| || ||||| ||||||||||||   ||||  | || ||| || | |||||||| | ||||||||||||    
T  30307355 cttttcttcaaaatataaaatcctcctcatttgggggaactaaaaaattgtatt---tgagggttttggggggtgtaggagggtt-atatgaattcttca 30307450  T
Q  205 tatttaatatatgtagctatgatattcttaaaatt 239  Q
     ||||||||||||  | | | ||||||||||||||    
T  30307451 aatttaatatatgctgttgtaatattcttaaaatt 30307485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 160
Target Start/End: Complemental strand, 38317321 - 38317273
Alignment:
Q  112 tcataatacaaaatcctcctcattttggagaacttaaaaattgtattgg 160  Q
    |||||||| |||||||||||||||| || ||||| ||||||||||||||    
T  38317321 tcataataaaaaatcctcctcatttgggggaactcaaaaattgtattgg 38317273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 161
Target Start/End: Original strand, 35959179 - 35959234
Alignment:
Q  106 ttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattgga 161  Q
    ||||| ||||||||||||| ||||||||||| || ||||| |||| ||||||||||    
T  35959179 ttttcttcataatacaaaaccctcctcatttgggggaactaaaaagttgtattgga 35959234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 239
Target Start/End: Complemental strand, 41363904 - 41363777
Alignment:
Q  112 tcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaa 211  Q
    |||||||| ||||||| |||||| | || ||||| ||||||||||||||  |||  | || ||| ||| ||||||| | | ||||||| |||| ||| ||    
T  41363904 tcataataaaaaatccccctcatgtgggggaactcaaaaattgtattgggggagggttttggggggttatggagggattatatgaatttttcaaattcaa 41363805  T
Q  212 tatatgtagctatgatattcttaaaatt 239  Q
    | ||||| | ||| ||||||||||||||    
T  41363804 tctatgttgttataatattcttaaaatt 41363777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 206
Target Start/End: Original strand, 45971501 - 45971643
Alignment:
Q  63 aagaaatagaagacattgagatgggaagctttttggagtttgcttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggat 162  Q
    |||||||||| || | ||||| |||| | |||| || |||  |||||| ||||||||| ||| || |||||||| || ||||| |||||||||||||||     
T  45971501 aagaaatagaggaaaatgagaggggagggttttgggggttaacttttcttcataatactaaaccc-cctcatttgggggaactaaaaaattgtattggag 45971599  T
Q  163 gagaatattagggagttttggagggttaaaatgaattcttcata 206  Q
    ||| || || |||  ||||||| |||| | ||||||| ||||||    
T  45971600 gaggatttttggggattttggaaggtttatatgaatttttcata 45971643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 157
Target Start/End: Original strand, 54205822 - 54205873
Alignment:
Q  106 ttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtat 157  Q
    ||||| |||||| |||||||||||||||||| || ||||| |||||||||||    
T  54205822 ttttcttcataaaacaaaatcctcctcatttgggggaactcaaaaattgtat 54205873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 159
Target Start/End: Original strand, 45823537 - 45823591
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattg 159  Q
    |||||| |||||||||||||  |||||||||| ||  ||||||||||||||||||    
T  45823537 cttttcttcataatacaaaactctcctcatttggggaaacttaaaaattgtattg 45823591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 239
Target Start/End: Original strand, 48620359 - 48620405
Alignment:
Q  193 atgaattcttcatatttaatatatgtagctatgatattcttaaaatt 239  Q
    |||||||||||| ||||||||||||| | ||| ||||||||||||||    
T  48620359 atgaattcttcaaatttaatatatgttgttataatattcttaaaatt 48620405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 239
Target Start/End: Original strand, 47063753 - 47063798
Alignment:
Q  194 tgaattcttcatatttaatatatgtagctatgatattcttaaaatt 239  Q
    ||||||||||| ||||||||||||| | ||| ||||||||||||||    
T  47063753 tgaattcttcaaatttaatatatgttgttattatattcttaaaatt 47063798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 239
Target Start/End: Original strand, 47669793 - 47669926
Alignment:
Q  106 ttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcat 205  Q
    ||||| |||||||| |||| |  |||||||| |  ||||| ||||||||||||||  |||| | || | | ||| ||||||||| | ||||||| ||||     
T  47669793 ttttcctcataataaaaaacctccctcatttggaggaactcaaaaattgtattgggggagagttttggagggttatggagggtttatatgaatttttcaa 47669892  T
Q  206 atttaatatatgtagctatgatattcttaaaatt 239  Q
    ||| ||| ||||| | ||| ||||||||||||||    
T  47669893 attcaatctatgttgttataatattcttaaaatt 47669926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 160
Target Start/End: Complemental strand, 21296197 - 21296149
Alignment:
Q  112 tcataatacaaaatcctcctcattttggagaacttaaaaattgtattgg 160  Q
    |||||||| ||||||| ||| |||| |||||||| ||||||||||||||    
T  21296197 tcataataaaaaatcccccttatttgggagaactcaaaaattgtattgg 21296149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 161
Target Start/End: Original strand, 31428753 - 31428849
Alignment:
Q  66 aaatagaagacattgagatgggaa-gctttttggagtttgcttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattgga 161  Q
    ||||||| || ||||||| ||||| |||||| |||||||  ||||  || |||||||||| |||| |||||| || ||| | |||||||||||||||    
T  31428753 aaatagatgatattgagaggggaaagcttttgggagtttatttttattcgtaatacaaaaccctcttcatttgggggaattaaaaaattgtattgga 31428849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 164
Target Start/End: Complemental strand, 54724037 - 54723937
Alignment:
Q  63 aagaaatagaagacattgagatgggaagctttttggag-tttgcttttcgtcataatacaaaatcctcctcattttggagaactt-aaaaattgtattgg 160  Q
    |||||||||| |||||||||| | ||| | |||||||| |||  ||||| ||||||||||||||||| |||||||  ||||| || ||||||| ||||||    
T  54724037 aagaaatagatgacattgagaggagaa-cattttggaggtttatttttcttcataatacaaaatcctactcattt--gagaaattaaaaaattatattgg 54723941  T
Q  161 atga 164  Q
    ||||    
T  54723940 atga 54723937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 106 - 239
Target Start/End: Original strand, 6491167 - 6491300
Alignment:
Q  106 ttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcat 205  Q
    ||||| ||||||||||||||| ||||||||| || ||||| ||||||||||||||| ||  || || ||| |||| |||||||| | ||||||||||||     
T  6491167 ttttcttcataatacaaaatcttcctcatttgggggaactcaaaaattgtattggaggaagattttggggtgtttcggagggtttatatgaattcttcaa 6491266  T
Q  206 atttaatatatgtagctatgatattcttaaaatt 239  Q
    ||||||  ||||| | ||| ||||||||||||||    
T  6491267 atttaacttatgttgttataatattcttaaaatt 6491300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 105 - 239
Target Start/End: Original strand, 39649553 - 39649687
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttca 204  Q
    |||||| |||| |||||||| ||||||||||| |  ||||| ||||||||||||||| ||| || || ||| ||||||||||||||| | ||||| ||||    
T  39649553 cttttcttcatgatacaaaaccctcctcatttggaggaactaaaaaattgtattggaggaggattttggggggttttggagggttaataagaatttttca 39649652  T
Q  205 tatttaatatatgtagctatgatattcttaaaatt 239  Q
     | ||||| ||||| ||||| ||||| ||||||||    
T  39649653 aaattaatctatgttgctataatatttttaaaatt 39649687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 105 - 239
Target Start/End: Complemental strand, 10955789 - 10955655
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttca 204  Q
    |||||| ||||||||||||| ||||||||||| || ||||| ||| ||||||||||| ||| || ||  || ||||| ||| ||||| || |||||||||    
T  10955789 cttttcatcataatacaaaaccctcctcatttgggggaactaaaagattgtattggaggaggattttgaggggttttagagagttaatatcaattcttca 10955690  T
Q  205 tatttaatatatgtagctatgatattcttaaaatt 239  Q
     ||||||| ||||| |||||  |||| ||||||||    
T  10955689 aatttaatctatgttgctatactatttttaaaatt 10955655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 105 - 239
Target Start/End: Complemental strand, 35683572 - 35683438
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttca 204  Q
    |||||| ||||||||||||| ||||||||||| |  ||||| ||||||||||||||| | ||   || |||  |||||||||||||| | ||||||||||    
T  35683572 cttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattgtattggaggtgagatttgggggattttggagggttaataagaattcttca 35683473  T
Q  205 tatttaatatatgtagctatgatattcttaaaatt 239  Q
     ||||||| ||||| | ||| ||||| ||||||||    
T  35683472 aatttaatttatgttgttataatatttttaaaatt 35683438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 239
Target Start/End: Complemental strand, 19389909 - 19389793
Alignment:
Q  112 tcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaa 211  Q
    ||||||||||||||||||||||||| || ||||| ||||||||||||||| ||| ||          ||||||||||| | |||||||||||| ||||||    
T  19389909 tcataatacaaaatcctcctcatttggg-gaactaaaaaattgtattggaggaggat----------tttggagggtttacatgaattcttcaaatttaa 19389821  T
Q  212 tatatgtagctatgatattcttaaaatt 239  Q
    | ||||||| ||| ||||| ||||||||    
T  19389820 tctatgtagttataatatttttaaaatt 19389793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 239
Target Start/End: Complemental strand, 27480261 - 27480137
Alignment:
Q  115 taatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaatat 214  Q
    ||||| ||||||||||||||||  | ||||| ||||||||||||||  |||  | |||||| ||| ||||||||| | ||||||| |||| ||| ||| |    
T  27480261 taataaaaaatcctcctcatttgagggaactcaaaaattgtattgggggagggttttagggggttatggagggtttatatgaatttttcaaattcaatct 27480162  T
Q  215 atgtagctatgatattcttaaaatt 239  Q
    |||| | ||| ||||||||||||||    
T  27480161 atgttgttataatattcttaaaatt 27480137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 116 - 239
Target Start/End: Original strand, 6373131 - 6373253
Alignment:
Q  116 aatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaatata 215  Q
    |||| |||| ||||||||||| || ||||| |||||||||||| || || | | || ||| |||| |||||||| | ||||||| || | ||||||||||    
T  6373131 aatataaaaccctcctcatttggg-gaactaaaaaattgtattcgaggaaagttttggggggtttgggagggtttatatgaattttttaaatttaatata 6373229  T
Q  216 tgtagctatgatattcttaaaatt 239  Q
    ||| | ||||||||||||||||||    
T  6373230 tgttgttatgatattcttaaaatt 6373253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 116 - 239
Target Start/End: Original strand, 6632642 - 6632764
Alignment:
Q  116 aatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaatata 215  Q
    |||| ||||||||| ||||||||||||||| |||| || ||||||| |||||  || ||||||||  ||||||| | ||||||| |||| | ||||||||    
T  6632642 aatataaaatcctcatcattttggagaactaaaaatttatattggaggagaaatttggggagtttgagagggtttatatgaattattca-aattaatata 6632740  T
Q  216 tgtagctatgatattcttaaaatt 239  Q
    |||   ||| ||||||||||||||    
T  6632741 tgttattataatattcttaaaatt 6632764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 239
Target Start/End: Complemental strand, 17668160 - 17668099
Alignment:
Q  178 ttttggagggttaaaatgaattcttcatatttaatatatgtagctatgatattcttaaaatt 239  Q
    |||||||||||| | |||||||||||| ||||||| ||||||| ||| ||||||||||||||    
T  17668160 ttttggagggtttacatgaattcttcaaatttaatctatgtagttataatattcttaaaatt 17668099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 147 - 239
Target Start/End: Complemental strand, 1935164 - 1935072
Alignment:
Q  147 aaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaatatatgtagctatgatattcttaaaatt 239  Q
    ||||||||||||||| |||    || ||| ||||||||||||| |  ||||||||||| ||||||||||||| | ||| ||||||||||||||    
T  1935164 aaaaattgtattggaggagggctttggggggttttggagggtttatgtgaattcttcaaatttaatatatgttgttataatattcttaaaatt 1935072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 215
Target Start/End: Complemental strand, 3938218 - 3938120
Alignment:
Q  116 aatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaatata 215  Q
    |||| |||| ||| |||||||||| ||||| |||||||||||||||  || || || |||||||| |||| ||| | |||||||||||| ||||||||||    
T  3938218 aatataaaaccctgctcattttggggaactaaaaaattgtattggagtaggat-tttgggagtttgggagagtttatatgaattcttcaaatttaatata 3938120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 121 - 239
Target Start/End: Complemental strand, 3081414 - 3081297
Alignment:
Q  121 aaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaatatatgtag 220  Q
    |||| |||||||||||   |||||| ||||||| |||||||||||| | || ||| ||||  ||||||| | |||||||||| | |||||||||||||      
T  3081414 aaaaccctcctcatttgatagaactaaaaaattatattggatgagagttttgggg-gtttgagagggtttatatgaattctttaaatttaatatatgttc 3081316  T
Q  221 ctatgatattcttaaaatt 239  Q
     ||| ||||||||||||||    
T  3081315 ttataatattcttaaaatt 3081297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 239
Target Start/End: Original strand, 1658160 - 1658293
Alignment:
Q  106 ttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcat 205  Q
    |||| ||||||||| ||||||||| |||||| || ||| | ||||||||||||||  ||| || || ||  ||| ||||||||| | ||||||| ||||     
T  1658160 ttttagtcataataaaaaatcctcttcatttgggggaattcaaaaattgtattgggggaggatttttggaggttatggagggtttatatgaatttttcaa 1658259  T
Q  206 atttaatatatgtagctatgatattcttaaaatt 239  Q
    ||| ||| |||||   ||| ||||||||||||||    
T  1658260 attcaatctatgttattataatattcttaaaatt 1658293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 239
Target Start/End: Complemental strand, 3676541 - 3676480
Alignment:
Q  178 ttttggagggttaaaatgaattcttcatatttaatatatgtagctatgatattcttaaaatt 239  Q
    ||||| |||||| | |||||||||||| ||||||| ||||| ||||| ||||||||||||||    
T  3676541 ttttgaagggtttatatgaattcttcaaatttaatctatgttgctataatattcttaaaatt 3676480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 13294065 - 13294017
Alignment:
Q  112 tcataatacaaaatcctcctcattttggagaacttaaaaattgtattgga 161  Q
    |||||||||||||||||||||||||  || ||||||||||||||||||||    
T  13294065 tcataatacaaaatcctcctcatttaaga-aacttaaaaattgtattgga 13294017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 239
Target Start/End: Complemental strand, 5772819 - 5772695
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttca 204  Q
    |||||| ||||||||||||| ||||||||||| |  ||| | ||||||||||||||| |||           ||||||||||||||| | ||||||||||    
T  5772819 cttttcttcataatacaaaaccctcctcatttggaggaattaaaaaattgtattggaggagg----------gttttggagggttaataagaattcttca 5772730  T
Q  205 tatttaatatatgtagctatgatattcttaaaatt 239  Q
     ||||||| ||||| | ||| ||||| ||||||||    
T  5772729 aatttaatttatgttgttataatatttttaaaatt 5772695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 239
Target Start/End: Original strand, 10437968 - 10438092
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttca 204  Q
    |||||| | ||||||||||||||||||||||| |  ||||| |||| |||||||||| |||           ||||||||||||||| || |||||||||    
T  10437968 cttttctttataatacaaaatcctcctcatttagaggaactaaaaagttgtattggaggagg----------gttttggagggttaatatcaattcttca 10438057  T
Q  205 tatttaatatatgtagctatgatattcttaaaatt 239  Q
     ||||||| ||||| |||||  |||| ||||||||    
T  10438058 aatttaatctatgttgctatactatttttaaaatt 10438092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 212
Target Start/End: Original strand, 13569345 - 13569452
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttca 204  Q
    |||||| ||||||||||||||  ||||||||| |  |||||  |||||| ||||||| |||  | || |||||||||||||| |||| | ||||| ||||    
T  13569345 cttttcttcataatacaaaattttcctcatttggaggaactacaaaattatattggaggagggttttggggagttttggaggattaataagaatttttca 13569444  T
Q  205 tatttaat 212  Q
     |||||||    
T  13569445 aatttaat 13569452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 159
Target Start/End: Original strand, 10843026 - 10843080
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattg 159  Q
    |||||| ||||||||||||| ||||||||||| |  ||||| |||||||||||||    
T  10843026 cttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattgtattg 10843080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 239
Target Start/End: Complemental strand, 5088896 - 5088835
Alignment:
Q  178 ttttggagggttaaaatgaattcttcatatttaatatatgtagctatgatattcttaaaatt 239  Q
    ||||||||| || | | |||||||||| ||||||| ||||||| ||| ||||||||||||||    
T  5088896 ttttggaggatttataggaattcttcaaatttaatttatgtagttataatattcttaaaatt 5088835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 5836871 - 5836924
Alignment:
Q  106 ttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattg 159  Q
    ||||| |||||||||||||  || ||||||| || |||||||||||||||||||    
T  5836871 ttttcttcataatacaaaactcttctcatttgggggaacttaaaaattgtattg 5836924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 4841730 - 4841674
Alignment:
Q  183 gagggttaaaatgaattcttcatatttaatatatgtagctatgatattcttaaaatt 239  Q
    ||||||| | |||||||||||| ||| ||||||||| | ||| ||||||||||||||    
T  4841730 gagggtttatatgaattcttcaaattgaatatatgttgttataatattcttaaaatt 4841674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 9096301 - 9096357
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattgga 161  Q
    |||||| ||||||||||||||| |||| |||| || ||||| || ||||||||||||    
T  9096301 cttttcttcataatacaaaatcttcctaatttgggggaactcaacaattgtattgga 9096357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 14570139 - 14570083
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattgga 161  Q
    |||||| | ||||||| ||| ||||||||||| |||||||| ||||||| |||||||    
T  14570139 cttttctttataatactaaaccctcctcatttgggagaactaaaaaattatattgga 14570083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 160
Target Start/End: Original strand, 25026911 - 25026959
Alignment:
Q  112 tcataatacaaaatcctcctcattttggagaacttaaaaattgtattgg 160  Q
    |||||||| ||||||  |||||||| |||||||| ||||||||||||||    
T  25026911 tcataataaaaaatctccctcatttgggagaactaaaaaattgtattgg 25026959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 160
Target Start/End: Original strand, 35701049 - 35701097
Alignment:
Q  112 tcataatacaaaatcctcctcattttggagaacttaaaaattgtattgg 160  Q
    |||||||| ||||||| |||||||| || ||||| ||||||||||||||    
T  35701049 tcataataaaaaatccccctcatttgggggaactcaaaaattgtattgg 35701097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 38568466 - 38568410
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattgga 161  Q
    |||||| ||||||||| ||| ||||||||||| || ||||| ||||||| |||||||    
T  38568466 cttttcttcataatactaaaccctcctcatttgggggaactaaaaaattatattgga 38568410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 239
Target Start/End: Original strand, 39011836 - 39011947
Alignment:
Q  127 ctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaatatatgtagctatga 226  Q
    ||||||||||  ||||||| |||||||||||||   |||  | || |||||||| ||| | || | |||||||||| | ||||||||||||||| ||| |    
T  39011836 ctcctcatttgagagaactaaaaaattgtattgatggagggtttttgggagtttgggaagatttatatgaattcttaaaatttaatatatgtagttataa 39011935  T
Q  227 tattcttaaaatt 239  Q
    |||| ||||||||    
T  39011936 tatt-ttaaaatt 39011947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 160
Target Start/End: Original strand, 41694966 - 41695014
Alignment:
Q  112 tcataatacaaaatcctcctcattttggagaacttaaaaattgtattgg 160  Q
    |||||||| ||||||| |||||||| || ||||| ||||||||||||||    
T  41694966 tcataataaaaaatccccctcatttgggggaactcaaaaattgtattgg 41695014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 105 - 239
Target Start/End: Complemental strand, 2122 - 1988
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatga-gaatattagggagttttggagggttaaaatgaattcttc 203  Q
    |||||| ||||||||||||| ||||||||||| |  ||||| ||||||||||||||| || | || || ||||||||||||||||||| | |||||||||    
T  2122 cttttcttcataatacaaaaccctcctcatttggaggaactgaaaaattgtattggaggaaggat-ttggggagttttggagggttaataagaattcttc 2024  T
Q  204 atatttaatatatgtagctatgatattcttaaaatt 239  Q
    | ||||||| ||||| | ||| ||||| ||||||||    
T  2023 aaatttaatttatgttgttataatatttttaaaatt 1988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 112 - 239
Target Start/End: Complemental strand, 40985166 - 40985039
Alignment:
Q  112 tcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaa 211  Q
    ||||||||||||||||||||||||| || ||||| ||||||||||||||| |||  | ||  || ||||||||||||| | |||||||||||| ||||||    
T  40985166 tcataatacaaaatcctcctcatttgggggaactcaaaaattgtattggaggagggttttgaggggttttggagggtttacatgaattcttcaaatttaa 40985067  T
Q  212 tatatgtagctatgatattcttaaaatt 239  Q
    | ||| ||| |||  |||| ||||||||    
T  40985066 tttatatagttatagtattattaaaatt 40985039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 105 - 239
Target Start/End: Complemental strand, 21173957 - 21173823
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttca 204  Q
    |||||| ||||||||||||| ||||||||||| |  ||||| ||||||| ||||||| |||  | || ||| ||||||||||||||| | ||||||||||    
T  21173957 cttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattatattggaggagggttttggggggttttggagggttaataagaattcttca 21173858  T
Q  205 tatttaatatatgtagctatgatattcttaaaatt 239  Q
     ||||||| ||||| | ||| ||||| ||||||||    
T  21173857 aatttaatttatgttgttataatatttttaaaatt 21173823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 106 - 239
Target Start/End: Complemental strand, 1839918 - 1839785
Alignment:
Q  106 ttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcat 205  Q
    ||||| ||| |||| |||| ||||||||||| || ||||||||||||||||||||| |||  | || ||| ||||  ||||||| | ||||||||||||     
T  1839918 ttttcttcaaaatataaaaccctcctcatttgggggaacttaaaaattgtattggaggagggttttggggggtttaagagggtttatatgaattcttcaa 1839819  T
Q  206 atttaatatatgtagctatgatattcttaaaatt 239  Q
    ||||||||||||| | ||| ||||| ||||||||    
T  1839818 atttaatatatgttgttataatatttttaaaatt 1839785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 112 - 239
Target Start/End: Complemental strand, 2474858 - 2474732
Alignment:
Q  112 tcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaa 211  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||   ||| || || ||| ||| ||||||||| | ||||||| |||| ||| ||    
T  2474858 tcataataaaaaatcctcctcatttgggagaacttaaaaattgtattgtgggaggat-tttgggggttatggagggtttatatgaatttttcaaattcaa 2474760  T
Q  212 tatatgtagctatgatattcttaaaatt 239  Q
    | ||||| | ||| ||||||||||||||    
T  2474759 tctatgttgttataatattcttaaaatt 2474732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 112 - 239
Target Start/End: Complemental strand, 43733212 - 43733085
Alignment:
Q  112 tcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaa 211  Q
    |||||||||||||||||||||||||  | ||| | ||||||||||||||| |||  | || |||||||||||||| || | ||||||| || | ||| ||    
T  43733212 tcataatacaaaatcctcctcatttgagggaattaaaaaattgtattggaggagggtttttgggagttttggaggatttatatgaatttttaaaattcaa 43733113  T
Q  212 tatatgtagctatgatattcttaaaatt 239  Q
    | ||||| | ||| ||||||||||||||    
T  43733112 tctatgttgttataatattcttaaaatt 43733085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 105 - 216
Target Start/End: Complemental strand, 12506295 - 12506184
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttca 204  Q
    |||||| ||| ||||  ||| ||||||||||| || ||||| |||||||||||||||  || || || ||| | ||||||||||| | ||||||||||||    
T  12506295 cttttcttcaaaatattaaaccctcctcatttgggggaactaaaaaattgtattggagaaggatttttgggggctttggagggtttatatgaattcttca 12506196  T
Q  205 tatttaatatat 216  Q
     |||||||||||    
T  12506195 aatttaatatat 12506184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 238
Target Start/End: Original strand, 43239652 - 43239784
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatatt-agggagttttggagggttaaaatgaattcttc 203  Q
    |||||| |||||| |||||| ||||||||||| || ||| | |||||||||||||||||||  | || ||||| ||||| |||||| | |||||||||||    
T  43239652 cttttcttcataacacaaaagcctcctcatttggg-gaattaaaaaattgtattggatgaggtttttgaggga-ttttgaagggtttatatgaattcttc 43239749  T
Q  204 atatttaatatatgtagctatgatattcttaaaat 238  Q
    | ||||||| ||||| | ||| ||||| |||||||    
T  43239750 aaatttaatctatgttgatataatatttttaaaat 43239784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 235
Target Start/End: Original strand, 39193914 - 39194043
Alignment:
Q  106 ttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcat 205  Q
    ||||| |||||||| |||| |||| |||||| || ||||| |||| |||||||||| |||  | || ||| |||||| |||||| | ||||||||||||     
T  39193914 ttttcttcataatataaaaccctcttcatttgggggaactaaaaagttgtattggaggagggtttttgggggttttgaagggtttatatgaattcttcaa 39194013  T
Q  206 atttaatatatgtagctatgatattcttaa 235  Q
    ||||| | ||||| | ||| ||||||||||    
T  39194014 atttattctatgttgttataatattcttaa 39194043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 16424198 - 16424254
Alignment:
Q  183 gagggttaaaatgaattcttcatatttaatatatgtagctatgatattcttaaaatt 239  Q
    ||||||| | |||||||||||| ||||||||||||||| ||| ||||||||||||||    
T  16424198 gagggtttatatgaattcttcaaatttaatatatgtagttataatattcttaaaatt 16424254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 105 - 189
Target Start/End: Complemental strand, 23932657 - 23932573
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggtt 189  Q
    |||||| ||||||||||||| ||||||||||| |  ||||| ||||||||||||||| ||| || || ||| ||||| |||||||    
T  23932657 cttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattgtattggaggaggattttggggggttttagagggtt 23932573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 239
Target Start/End: Original strand, 10589787 - 10589920
Alignment:
Q  106 ttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcat 205  Q
    ||||| ||| |||| |||||| | ||||||| | |||||| ||||||||||||||| ||| || || ||| |||| |||| ||| | || |||| || |     
T  10589787 ttttcttcaaaatataaaatcattctcatttagaagaactaaaaaattgtattggaggaggattttggggggtttgggagagtttatataaattttttaa 10589886  T
Q  206 atttaatatatgtagctatgatattcttaaaatt 239  Q
    ||||||| ||||||| ||| ||||| ||||||||    
T  10589887 atttaatctatgtagttataatatttttaaaatt 10589920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 239
Target Start/End: Original strand, 27085360 - 27085464
Alignment:
Q  135 tttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaatatatgtagctatgatattctta 234  Q
    ||||| ||||| ||||||||||||||| ||   | ||| || |||| |||||||| | |||||||||||| ||||||||||||| | ||| ||||| ||     
T  27085360 tttggggaactaaaaaattgtattggaggatggttttaaggggtttgggagggtttatatgaattcttcaaatttaatatatgttgttataatatttttt 27085459  T
Q  235 aaatt 239  Q
    |||||    
T  27085460 aaatt 27085464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 161
Target Start/End: Complemental strand, 79711 - 79656
Alignment:
Q  106 ttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattgga 161  Q
    ||||| ||||||||| ||| ||||||||||| || ||||| |||||||||||||||    
T  79711 ttttcttcataatactaaaccctcctcatttgggggaactaaaaaattgtattgga 79656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 239
Target Start/End: Complemental strand, 13865183 - 13865057
Alignment:
Q  112 tcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaa 211  Q
    |||||||| ||||||| ||| |||| || ||||| ||||||||||||||  |||  | || ||| ||| || |||||| | ||||||| |||| ||||||    
T  13865183 tcataataaaaaatcccccttatttggg-gaactcaaaaattgtattgggggagggttttggggggttatgaagggtttatatgaatttttcaaatttaa 13865085  T
Q  212 tatatgtagctatgatattcttaaaatt 239  Q
    | ||||| | ||| ||||||||||||||    
T  13865084 tctatgttgttataatattcttaaaatt 13865057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 239
Target Start/End: Complemental strand, 26772741 - 26772617
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttca 204  Q
    |||||| ||||||||||||| |||| ||||||    ||||| |||||||||||||||||||           ||||||||||||||| | ||||||||||    
T  26772741 cttttcttcataatacaaaaccctcatcatttgaaggaactaaaaaattgtattggatgagg----------gttttggagggttaataagaattcttca 26772652  T
Q  205 tatttaatatatgtagctatgatattcttaaaatt 239  Q
     ||||||| ||||| | ||| ||||| ||||||||    
T  26772651 aatttaatttatgttgttataatatttttaaaatt 26772617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 239
Target Start/End: Complemental strand, 36837525 - 36837463
Alignment:
Q  177 gttttggagggttaaaatgaattcttcatatttaatatatgtagctatgatattcttaaaatt 239  Q
    ||||||||||||||| | |||||||||| ||||||| ||||| | ||| ||||| ||||||||    
T  36837525 gttttggagggttaataagaattcttcaaatttaatttatgttgttataatatttttaaaatt 36837463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 239
Target Start/End: Original strand, 41455329 - 41455375
Alignment:
Q  193 atgaattcttcatatttaatatatgtagctatgatattcttaaaatt 239  Q
    |||||||||||| ||||||||||||| | ||| ||||||||||||||    
T  41455329 atgaattcttcaaatttaatatatgttgttataatattcttaaaatt 41455375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 6943493 - 6943452
Alignment:
Q  177 gttttggagggttaaaatgaattcttcatatttaatatatgt 218  Q
    ||||||||||||||| |||||||||||| ||||||| |||||    
T  6943493 gttttggagggttaatatgaattcttcaaatttaatttatgt 6943452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 239
Target Start/End: Complemental strand, 31305811 - 31305750
Alignment:
Q  178 ttttggagggttaaaatgaattcttcatatttaatatatgtagctatgatattcttaaaatt 239  Q
    |||||||||||| | |||||||||||| |||||||||| ||   ||| ||||||||||||||    
T  31305811 ttttggagggtttatatgaattcttcaaatttaatatacgttcttattatattcttaaaatt 31305750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 35616615 - 35616676
Alignment:
Q  178 ttttggagggttaaaatgaattcttcatatttaatatatgtagctatgatattcttaaaatt 239  Q
    |||||||||||| | |||||||||||| ||||||| || |||| ||  ||||||||||||||    
T  35616615 ttttggagggtttacatgaattcttcaaatttaatttaggtagttacaatattcttaaaatt 35616676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 239
Target Start/End: Complemental strand, 1942122 - 1942018
Alignment:
Q  135 tttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaatatatgtagctatgatattctta 234  Q
    ||||| ||||| ||||||||||||||  |||  | || ||| ||| ||||||||| | ||||||| |||| ||| ||| ||||| | ||| |||||||||    
T  1942122 tttggggaactcaaaaattgtattgggggagggttttggggggttatggagggtttatatgaatttttcaaattcaatctatgttgttataatattctta 1942023  T
Q  235 aaatt 239  Q
    |||||    
T  1942022 aaatt 1942018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 3393974 - 3394025
Alignment:
Q  114 ataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgaga 166  Q
    |||||||||||||||||||| ||| ||||||| ||||||| ||||||| ||||    
T  3393974 ataatacaaaatcctcctca-tttagagaactcaaaaattatattggaggaga 3394025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 166
Target Start/End: Original strand, 8950329 - 8950388
Alignment:
Q  106 ttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgaga 166  Q
    ||||| |||||||||||||||||| | | |||||| |||| ||||||||||||| ||||||    
T  8950329 ttttcttcataatacaaaatcctcgt-aatttggaaaactaaaaaattgtattgcatgaga 8950388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 160
Target Start/End: Original strand, 25033369 - 25033417
Alignment:
Q  112 tcataatacaaaatcctcctcattttggagaacttaaaaattgtattgg 160  Q
    |||||||| |||||| ||||||||| || ||||| ||||||||||||||    
T  25033369 tcataataaaaaatcatcctcatttgggggaactcaaaaattgtattgg 25033417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 239
Target Start/End: Complemental strand, 31297417 - 31297313
Alignment:
Q  135 tttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaatatatgtagctatgatattctta 234  Q
    ||||| ||||| ||||||||||||||| |||  | || ||| ||| ||||||||| | ||||||| |||| ||| ||| |||||   ||| |||||||||    
T  31297417 tttggggaactaaaaaattgtattggaggagggttttggggggttatggagggtttatatgaatttttcaaattcaatctatgttattataatattctta 31297318  T
Q  235 aaatt 239  Q
    |||||    
T  31297317 aaatt 31297313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 239
Target Start/End: Original strand, 36906179 - 36906303
Alignment:
Q  115 taatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaatat 214  Q
    ||||| ||||||| |||||||| || ||||| ||||||||||||||  |||  | || ||| ||| ||||||||| | ||||||| |||| ||  ||| |    
T  36906179 taataaaaaatccccctcatttgggggaactcaaaaattgtattgggggagggttttggggggttatggagggtttatatgaatttttcaaatccaatct 36906278  T
Q  215 atgtagctatgatattcttaaaatt 239  Q
    |||| |  || ||||||||||||||    
T  36906279 atgttgtcataatattcttaaaatt 36906303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 105 - 239
Target Start/End: Original strand, 26361 - 26496
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtatt-ggatgagaatattagggagttttggagggttaaaatgaattcttc 203  Q
    |||||| ||||||||||||| ||||||||||| |  ||||| |||||||||||| ||| |||  | || ||| ||||||||||||||| | |||||||||    
T  26361 cttttcttcataatacaaaaccctcctcatttggaggaactaaaaaattgtatttggaggagggttttggggggttttggagggttaataagaattcttc 26460  T
Q  204 atatttaatatatgtagctatgatattcttaaaatt 239  Q
    | ||||||| ||||| | ||| ||||| ||||||||    
T  26461 aaatttaatttatgttgttataatatttttaaaatt 26496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0248 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 105 - 239
Target Start/End: Complemental strand, 295 - 161
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttca 204  Q
    |||||| ||||||||||||| |||||| |||| |  ||||| ||||||||||||||| |||  | ||  || ||||||||||||||| | ||||||||||    
T  295 cttttcttcataatacaaaaccctccttatttggaggaactaaaaaattgtattggaggagggttttgcggggttttggagggttaataagaattcttca 196  T
Q  205 tatttaatatatgtagctatgatattcttaaaatt 239  Q
     ||||||| ||||| | ||| ||||| ||||||||    
T  195 aatttaatctatgttgttataatatttttaaaatt 161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 105 - 239
Target Start/End: Original strand, 29226 - 29360
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatga-gaatattagggagttttggagggttaaaatgaattcttc 203  Q
    |||||| ||||||||||||| |||| |||||| |  ||||| ||||||||||||||| || | || || ||| ||||||||||||||| | |||||||||    
T  29226 cttttcttcataatacaaaaccctcatcatttggaggaactaaaaaattgtattggaggaaggat-ttggggggttttggagggttaataagaattcttc 29324  T
Q  204 atatttaatatatgtagctatgatattcttaaaatt 239  Q
    | ||||||| ||||| | ||| ||||| ||||||||    
T  29325 aaatttaatttatgttgttataatatttttaaaatt 29360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 239
Target Start/End: Complemental strand, 6856 - 6722
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttca 204  Q
    |||||| ||||||||||||| ||||||||||| |  ||||| ||| ||||||||||| |||  | || ||| |||| | |||||||| ||||||||||||    
T  6856 cttttcttcataatacaaaaccctcctcatttggaggaactaaaacattgtattggaggagggttttggggggtttcgaagggttaatatgaattcttca 6757  T
Q  205 tatttaatatatgtagctatgatattcttaaaatt 239  Q
     ||||||| ||| | | ||| ||||| ||||||||    
T  6756 aatttaatctatcttgttataatatttttaaaatt 6722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 239
Target Start/End: Complemental strand, 7839 - 7705
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttca 204  Q
    |||||| ||||||||||||| ||||||||||| |  ||||| ||| ||||||||||| |||  | || ||| |||| | |||||||| ||||||||||||    
T  7839 cttttcttcataatacaaaaccctcctcatttggaggaactaaaacattgtattggaggagggttttggggggtttcgaagggttaatatgaattcttca 7740  T
Q  205 tatttaatatatgtagctatgatattcttaaaatt 239  Q
     ||||||| ||| | | ||| ||||| ||||||||    
T  7739 aatttaatctatcttgttataatatttttaaaatt 7705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 239
Target Start/End: Complemental strand, 93605 - 93471
Alignment:
Q  105 cttttcgtcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttca 204  Q
    |||||| |||||||||||||  |||||||||| |  ||||| ||||||||||||||| |||  | || ||| ||||| ||||||||| | |||| |||||    
T  93605 cttttcttcataatacaaaactctcctcatttggaggaactaaaaaattgtattggaggagggttttggggggttttcgagggttaataagaatgcttca 93506  T
Q  205 tatttaatatatgtagctatgatattcttaaaatt 239  Q
     ||||||| ||||| | ||| ||||| ||||||||    
T  93505 aatttaatttatgttgttataatatttttaaaatt 93471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 239
Target Start/End: Complemental strand, 35546 - 35420
Alignment:
Q  112 tcataatacaaaatcctcctcattttggagaacttaaaaattgtattggatgagaatattagggagttttggagggttaaaatgaattcttcatatttaa 211  Q
    |||||||| ||||| | |||||||| || ||||| ||||||||||||||  |||  | || ||| ||| ||||||||| | ||||||| |||| ||| ||    
T  35546 tcataataaaaaattcccctcatttggg-gaactcaaaaattgtattgggggagggttttggggggttatggagggtttatatgaatttttcaaattcaa 35448  T
Q  212 tatatgtagctatgatattcttaaaatt 239  Q
    | ||||| | ||| ||||||||||||||    
T  35447 tctatgttgttataatattcttaaaatt 35420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 37176 - 37237
Alignment:
Q  178 ttttggagggttaaaatgaattcttcatatttaatatatgtagctatgatattcttaaaatt 239  Q
    |||||||||||| | |||||||||||| ||||||||||||| | |||  |||| ||||||||    
T  37176 ttttggagggtttatatgaattcttcaaatttaatatatgttgttatattatttttaaaatt 37237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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