View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3895_high_1 (Length: 544)

Name: NF3895_high_1
Description: NF3895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3895_high_1
NF3895_high_1
[»] chr3 (3 HSPs)
chr3 (86-174)||(27205072-27205160)
chr3 (476-529)||(27205166-27205218)
chr3 (235-272)||(5900248-5900285)
[»] chr2 (2 HSPs)
chr2 (86-166)||(16424768-16424848)
chr2 (362-408)||(16424802-16424848)
[»] chr6 (1 HSPs)
chr6 (235-277)||(4472416-4472458)
[»] chr4 (2 HSPs)
chr4 (235-277)||(29317314-29317356)
chr4 (303-351)||(29317234-29317282)


Alignment Details
Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 86 - 174
Target Start/End: Original strand, 27205072 - 27205160
Alignment:
Q  86 ctatcatacacaattgaagaatatcgccaaaaaattacttagagaaagtgaagatgactcaaaatcatatatttatacacacaatgatc 174  Q
    |||||||||||||||||| |||||| || || |||| | | || |||||||| ||||| |||||||| ||||||||| |||||||||||    
T  27205072 ctatcatacacaattgaaaaatatcacccaagaattgcatggaaaaagtgaaaatgacgcaaaatcacatatttatatacacaatgatc 27205160  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 476 - 529
Target Start/End: Original strand, 27205166 - 27205218
Alignment:
Q  476 atgagcaaccatatattcttccatgttcttcaaagagtattatagtataaattt 529  Q
    |||||||||||||||||||||||||||||||||||  ||||||||| |||||||    
T  27205166 atgagcaaccatatattcttccatgttcttcaaag-ttattatagtgtaaattt 27205218  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 235 - 272
Target Start/End: Complemental strand, 5900285 - 5900248
Alignment:
Q  235 agctacaacatttgaccaatctaaataatagagtaagt 272  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  5900285 agctacaacatttgaccaatctaaacaatagagtaagt 5900248  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 86 - 166
Target Start/End: Original strand, 16424768 - 16424848
Alignment:
Q  86 ctatcatacacaattgaagaatatcgccaaaaaattacttagagaaagtgaagatgactcaaaatcatatatttatacaca 166  Q
    ||||||||||||| | ||||||||| || || | || ||| |||||||||| |||||| |||||||| |||||||||||||    
T  16424768 ctatcatacacaactaaagaatatcacccaagatttgcttggagaaagtgacgatgacccaaaatcacatatttatacaca 16424848  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 362 - 408
Target Start/End: Original strand, 16424802 - 16424848
Alignment:
Q  362 ttgcttggagaaagagaagatgatcctaaatcacatatttatacaca 408  Q
    |||||||||||||| || ||||| || ||||||||||||||||||||    
T  16424802 ttgcttggagaaagtgacgatgacccaaaatcacatatttatacaca 16424848  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 235 - 277
Target Start/End: Complemental strand, 4472458 - 4472416
Alignment:
Q  235 agctacaacatttgaccaatctaaataatagagtaagtcgagt 277  Q
    |||||||| |||||| |||||||||||||||||||||| ||||    
T  4472458 agctacaatatttgatcaatctaaataatagagtaagttgagt 4472416  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 235 - 277
Target Start/End: Complemental strand, 29317356 - 29317314
Alignment:
Q  235 agctacaacatttgaccaatctaaataatagagtaagtcgagt 277  Q
    |||||||||||||| || |||||||||||||||||||| ||||    
T  29317356 agctacaacatttggccgatctaaataatagagtaagttgagt 29317314  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 303 - 351
Target Start/End: Complemental strand, 29317282 - 29317234
Alignment:
Q  303 aagatcaagatatatgtgaagagtaacaaagtgaaacaaaaactatcat 351  Q
    ||||| |||| || |||||||||||| |||| |||||||||||||||||    
T  29317282 aagattaagacatgtgtgaagagtaaaaaagagaaacaaaaactatcat 29317234  T

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