View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3895_high_12 (Length: 269)
Name: NF3895_high_12
Description: NF3895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3895_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 13765958 - 13765748
Alignment:
| Q |
19 |
tccaccctaggtgccgagatggaattcctcatacctctattcttcacacaggcgtggaaataagttgtattatgtccttctctctctcaaccattttgct |
118 |
Q |
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| T |
13765958 |
tccaccctaggagccgagatggaattcctcatacctctattcttcacacaggcgaggaaataagttgtattatgtccttctctctctcaaccactttgct |
13765859 |
T |
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| Q |
119 |
cttgaccattggaacatctacgagtcttagatcttcaaaatagtccacaaatacgccaaacactggttcttattagctacctccaccacaacaagatccc |
218 |
Q |
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||||||||||||||||||| |||||||| |||| |||||| ||| ||||||| ||||||||||||||||||| |||||||||||| | ||||||||||| |
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| T |
13765858 |
cttgaccattggaacatctgcgagtcttggatcgtcaaaacagtttacaaataggccaaacactggttcttatcagctacctccacaaaaacaagatccc |
13765759 |
T |
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| Q |
219 |
ttcccttagcc |
229 |
Q |
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| T |
13765758 |
tccccttagcc |
13765748 |
T |
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