View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3895_high_14 (Length: 249)
Name: NF3895_high_14
Description: NF3895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3895_high_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 47218262 - 47218047
Alignment:
| Q |
1 |
cgttttccagcctcaaacgcgagtctagatgttcaaacgccatttcaccatttttgaagatgtttgggtaactgcaaaagcgcttctaccaaacgtgaat |
100 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
47218262 |
cgtttttcagcctcaaacgtgagtctagatgttcaaatgccatttcaccatttttgaagatgtttgggtaactgcaaaagtgcttctaccaaacgtgaat |
47218163 |
T |
|
| Q |
101 |
ctagctccaaacccacgtttcctcaaagccacaaattggagcttctgcggctgttaaaatcaattctgcaaaagccccaaatttatttccagctttaccc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47218162 |
ctagctccaaacccacgtttcctcaaagccacaaattggagcttctgcggctgttaaaatcaattctgcaaaagccccaaatttatttccagctttaccc |
47218063 |
T |
|
| Q |
201 |
ttttttatctgctgcg |
216 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
47218062 |
ttttttatctgctgcg |
47218047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 24771497 - 24771439
Alignment:
| Q |
140 |
agcttctgcggctgttaaaatcaattctgcaaaagccccaaatttatttccagctttac |
198 |
Q |
| |
|
|||||||||| || ||||||||||||||||| || ||||||||| |||||||||||||| |
|
|
| T |
24771497 |
agcttctgcgtctattaaaatcaattctgcataaaccccaaattaatttccagctttac |
24771439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 2175783 - 2175568
Alignment:
| Q |
1 |
cgttttccagcctcaaacgcgagtctagatgttcaaacgccatttcaccatttttgaagatgtttgggtaactgcaaaagcgcttctaccaaacgtgaat |
100 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2175783 |
cgttttccaccctcaaacgtgagtctagatgttcaaacgccatttcaccattttttaagatgtttggataactgcaaaagcgcttctaccaaacgtgaat |
2175684 |
T |
|
| Q |
101 |
ctagctccaaacccacgtttcctcaaagccacaaattggagcttctgcggctgttaaaatcaattctgcaaaagccccaaatttatttccagctttaccc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2175683 |
ctagctccaaacccacgtttcctcaaagccacaaattggagcttctgcggctgttaaaatcaattctgcaaaagccccaaatttatttccagctttaccc |
2175584 |
T |
|
| Q |
201 |
ttttttatctgctgcg |
216 |
Q |
| |
|
||||||||||| |||| |
|
|
| T |
2175583 |
ttttttatctggtgcg |
2175568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 20830816 - 20830604
Alignment:
| Q |
1 |
cgttttccagcctcaaacgcgagtctagatgttcaaacgccatttcaccatttttgaagatgtttgggtaactgcaaaagcgcttctaccaaacgtgaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20830816 |
cgttttccagcctcaaacgcgagtctagatgttcaaacaccatttcaccatttttgaag--gtttgggtaactgcaaaagcgcttctaccaaacgtgaat |
20830719 |
T |
|
| Q |
101 |
ctagctccaaacccacgtttcctcaaagccacaaattggagcttctgcggctgttaaaatcaattctgcaaaagccccaaatttatttccagctttaccc |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
20830718 |
ctagctccaaacccacctttcctcaaagccacaaattggagcttctgcggctgttaaaatcaattctgcaaaagcctcaaatttatttccagctttaccc |
20830619 |
T |
|
| Q |
201 |
ttttttatctgctgc |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
20830618 |
ttttttatctgctgc |
20830604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 36547554 - 36547755
Alignment:
| Q |
1 |
cgttttccagcctcaaacgcgagtctagatgttcaaacgccatttcaccatttttgaagatgtttgggtaactgcaaaagcgcttctaccaaacgtgaat |
100 |
Q |
| |
|
||||||||| | |||| |||||| |||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||| | || ||||| | |
|
|
| T |
36547554 |
cgttttccaatcccaaaagcgagtttagagattcaaaagccatttcaccattttttaagatgtttgggtaactgcaaaagcgcttcaatcagccgtgatt |
36547653 |
T |
|
| Q |
101 |
ctagctccaaacccacgtttcctcaaagccacaaattggagcttctgcggctgttaaaatcaattctgcaaaagccccaaatttatttccagctttaccc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
36547654 |
ctagctccaaacccacgtttcctcaaagccataaattggagcttctgcggctgctaaaatcaattctgcaaaagccccaaatttgtttccagctttaccc |
36547753 |
T |
|
| Q |
201 |
tt |
202 |
Q |
| |
|
|| |
|
|
| T |
36547754 |
tt |
36547755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 200
Target Start/End: Complemental strand, 42516464 - 42516422
Alignment:
| Q |
158 |
aatcaattctgcaaaagccccaaatttatttccagctttaccc |
200 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||| ||||||| |
|
|
| T |
42516464 |
aatcaattatgcagaagccccaaatttatttccagttttaccc |
42516422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 24045191 - 24045398
Alignment:
| Q |
1 |
cgttttccagcctcaaacgcgagtctagatgttcaaacgccatttcaccatttttg--aagatgtttgggtaactgcaaaagcgcttctaccaaacgtga |
98 |
Q |
| |
|
|||||||| || |||| |||||| |||| |||||| || |||||||||||||| |||||||||||||||||||||||||||||| | || ||||| |
|
|
| T |
24045191 |
cgttttccgaccccaaaagcgagtttagagattcaaaagcgatttcaccattttttttaagatgtttgggtaactgcaaaagcgcttcaatcagtcgtga |
24045290 |
T |
|
| Q |
99 |
atctagctccaaacccacgtttcctcaaagccacaaattggagcttctgcggctgttaaaatcaattctgcaaaagccccaaatttatttccagctttac |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
24045291 |
ttctagctccaaacccacgtttcctcaaagccataaattggagcttctgcggctgttaaaatcaattctgcaaaagccccaaatttgtttccagctttac |
24045390 |
T |
|
| Q |
199 |
cctttttt |
206 |
Q |
| |
|
|||||||| |
|
|
| T |
24045391 |
cctttttt |
24045398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 216
Target Start/End: Original strand, 15576086 - 15576162
Alignment:
| Q |
140 |
agcttctgcggctgttaaaatcaattctgcaaaagccccaaatttatttccagctttacccttttttatctgctgcg |
216 |
Q |
| |
|
|||||||||| ||||||| |||||||||| || ||||||||| |||||||||||||| |||||| |||||||| |
|
|
| T |
15576086 |
agcttctgcgactgttaatatcaattctgttgaaaccccaaattcgtttccagctttaccatttttttcctgctgcg |
15576162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University