View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3895_high_18 (Length: 228)
Name: NF3895_high_18
Description: NF3895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3895_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 213
Target Start/End: Complemental strand, 14132378 - 14132181
Alignment:
| Q |
17 |
caaagggatactaatacatcacaacaacaagaacctttcattctgttctgaggttatttataatcttaatttgatggtttaaattatgttgtacatg-tg |
115 |
Q |
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| T |
14132378 |
caaagggatactaatacatcacaacaacaagaacctttcattctgttctgaggttatttataatcttaatttgatggtttaaattatgttgtacatgttg |
14132279 |
T |
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| Q |
116 |
gtacaatatttcagaagaataaaatttgcaagttgaaactaagactatatatgtgtgtgttattctgaattggatttgtgtgcatatcagttaattgt |
213 |
Q |
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| T |
14132278 |
gtacaatatttcagaagaataaaatttgcaagttgaaactaagactatatatgtgtgtgttattctgaattggatttgtgtgcatatcaattaattgt |
14132181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 17 - 211
Target Start/End: Complemental strand, 14119293 - 14119098
Alignment:
| Q |
17 |
caaagggatactaatacatcacaacaacaagaacctttcattctgttctgaggttatttataatcttaatttgatggtttaaattatgttgtacatg-tg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
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| T |
14119293 |
caaagggatactaatacatcacaacaacaagaacctatctttctgttctgaggttatttgtaatcttaatttgatggtttaaattatgttgtacatgttg |
14119194 |
T |
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| Q |
116 |
gtacaatatttcagaagaataaaatttgcaagttgaaactaagactatatatgtgtgtgttattctgaattggatttgtgtgcatatcagttaatt |
211 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
14119193 |
gtacaatatgtcagaagaataaaatttgcaagttgaaactaagactatatgtgtgtgtgttattctgaattggatttgtgtgcatattaattaatt |
14119098 |
T |
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