View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3895_high_8 (Length: 312)
Name: NF3895_high_8
Description: NF3895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3895_high_8 |
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| [»] chr3 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 13 - 312
Target Start/End: Complemental strand, 22598862 - 22598562
Alignment:
| Q |
13 |
aatatatgagaaacaagtcaaataattaagcaatatcaaatacgcataataaaaatacgaatttattgacaaattaataatttacctgccaca-catttt |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
22598862 |
aatatatgagaaacaagtcaaataattaagcaatatcaaatacgcataataaaaatacgaatttattgacaaaataataatttacctgccacaacatttt |
22598763 |
T |
|
| Q |
112 |
ccaacagctcatactcttcactcaaatttagatctttgaagtcgacgaaagatggtttcagccaattctgagtacaaatcaaagcttccgccatttccag |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
22598762 |
ccaacagctcatactcttcactcaaatttagatctttgaagtcgacgaaagatggtttcagccaattctgagtacaaatcaaagcttccgccatttccgg |
22598663 |
T |
|
| Q |
212 |
actcaacgagctcctatatgtgtctaaaatctttcccctggtgccaaaagcgctctccgaagcaactgatgatactggtgtggccaacacatctctaacc |
311 |
Q |
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|||||| |||||||||||||||||||||||| |||| | ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22598662 |
actcaatgagctcctatatgtgtctaaaatccttcctccggtgctaaatgcgctctccgaagcaactgatgatactggtgtggccaacacatctctaacc |
22598563 |
T |
|
| Q |
312 |
a |
312 |
Q |
| |
|
| |
|
|
| T |
22598562 |
a |
22598562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 13 - 312
Target Start/End: Original strand, 6837582 - 6837882
Alignment:
| Q |
13 |
aatatatgagaaacaagtcaaataattaagcaatatcaaatacgcataataaaaatacgaatttattgacaaattaataatttacctgccaca-catttt |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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|
| T |
6837582 |
aatatatgagaaacaagtcaaataattaagcaatatcaaatacgcataataaaaatacgaatttattgacaaaataataatttacctgccacaacatttt |
6837681 |
T |
|
| Q |
112 |
ccaacagctcatactcttcactcaaatttagatctttgaagtcgacgaaagatggtttcagccaattctgagtacaaatcaaagcttccgccatttccag |
211 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
6837682 |
ccaacaactcatactcttcactcaaatttagatctttgaagtcgacaaaagatggtttcagccaattctgagtacaaatcaaagcttccgccatttccgg |
6837781 |
T |
|
| Q |
212 |
actcaacgagctcctatatgtgtctaaaatctttcccctggtgccaaaagcgctctccgaagcaactgatgatactggtgtggccaacacatctctaacc |
311 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||| | ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6837782 |
actcaatgagctcctatatgtgtctaaaatccttcctccggtgctaaatgcgctctccgaagcaactgatgatactggtgtggccaacacatctctaacc |
6837881 |
T |
|
| Q |
312 |
a |
312 |
Q |
| |
|
| |
|
|
| T |
6837882 |
a |
6837882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 13 - 312
Target Start/End: Complemental strand, 16001227 - 16000927
Alignment:
| Q |
13 |
aatatatgagaaacaagtcaaataattaagcaatatcaaatacgcataataaaaatacgaatttattgacaaattaataatttacctgccaca-catttt |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
16001227 |
aatatatgagaaacaagtcaaataattaagcaatatcaaatgcgcataataaaaatacgaatttattgaaaaattaataatttacctgccacaacatttt |
16001128 |
T |
|
| Q |
112 |
ccaacagctcatactcttcactcaaatttagatctttgaagtcgacgaaagatggtttcagccaattctgagtacaaatcaaagcttccgccatttccag |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16001127 |
ccaacagctcatactcttcactcaaatttagatctttgaagttgacgaaagatggtttcagccaattctgagtacaaatcaaagcttccgccatttccag |
16001028 |
T |
|
| Q |
212 |
actcaacgagctcctatatgtgtctaaaatctttcccctggtgccaaaagcgctctccgaagcaactgatgatactggtgtggccaacacatctctaacc |
311 |
Q |
| |
|
|||||| ||||| |||||||||||||||||| |||||| ||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
16001027 |
actcaatgagcttctatatgtgtctaaaatccttccccgggtgctaaatgcgctctccgaagcaactgatgatacaggtgtggccaacacatctctaacc |
16000928 |
T |
|
| Q |
312 |
a |
312 |
Q |
| |
|
| |
|
|
| T |
16000927 |
a |
16000927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 285
Target Start/End: Original strand, 17435835 - 17435907
Alignment:
| Q |
212 |
actcaacgagctcctatatgtgtctaaaatctttcccctggtgccaaaagcgctctccgaagcaactgatgata |
285 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||| | |||| ||| | ||||| |||||||||||||||| |
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|
| T |
17435835 |
actcaatgagctcctatatgtgtctaaaacctttccaat-gtgctaaatgtgctctaagaagcaactgatgata |
17435907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 13 - 312
Target Start/End: Complemental strand, 22348302 - 22348002
Alignment:
| Q |
13 |
aatatatgagaaacaagtcaaataattaagcaatatcaaatacgcataataaaaatacgaatttattgacaaattaataatttacctgccaca-catttt |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
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| T |
22348302 |
aatatatgagaaacaagtcaaataattaagcaatatcaaatacgcataataaaaatacgaatttattgacaaattaataatttacctgccacaacatttt |
22348203 |
T |
|
| Q |
112 |
ccaacagctcatactcttcactcaaatttagatctttgaagtcgacgaaagatggtttcagccaattctgagtacaaatcaaagcttccgccatttccag |
211 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |
|
|
| T |
22348202 |
ccaacagctcacactcttcactcaaatttagatctttgaagtcgacgaaagatggtttcagccaattttgagtacaaatcaaagcttccgccatttccgg |
22348103 |
T |
|
| Q |
212 |
actcaacgagctcctatatgtgtctaaaatctttcccctggtgccaaaagcgctctccgaagcaactgatgatactggtgtggccaacacatctctaacc |
311 |
Q |
| |
|
|||||| ||||| |||||||||||||||||| |||||| |||| ||| ||||||| | ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22348102 |
actcaatgagcttctatatgtgtctaaaatccttcccccagtgctaaatgcgctcttcaaagcaactgatgatactggtgtggccaacacatctctaacc |
22348003 |
T |
|
| Q |
312 |
a |
312 |
Q |
| |
|
| |
|
|
| T |
22348002 |
a |
22348002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 13 - 312
Target Start/End: Original strand, 306405 - 306689
Alignment:
| Q |
13 |
aatatatgagaaacaagtcaaataattaagcaatatcaaatacgcataataaaaatacgaatttattgacaaattaataatttacctgccac-acatttt |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
306405 |
aatatatgagaaacaagtcaaataattaagcaatatcaaatacgcataataaaaatatgaatttattgacaaattaataatttacctgccacaacatttt |
306504 |
T |
|
| Q |
112 |
ccaacagctcatactcttcactcaaatttagatctttgaagtcgacgaaagatggtttcagccaattctgagtacaaatcaaagcttccgccatttccag |
211 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
306505 |
tcaacagctcatacttttcactcaaatttagatctttgaagtcgacgaaagatggtttcaaccaattctgagtaca----------------atttccga |
306588 |
T |
|
| Q |
212 |
actcaacgagctcctatatgtgtctaaaatctttcccctggtgccaaaagcgctctccgaagcaactgatgatactggtgtggccaacacatctctaacc |
311 |
Q |
| |
|
|||||| | ||||||||||| |||||||||| |||||| ||||| ||| ||||||||||||| |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
306589 |
actcaatgggctcctatatgggtctaaaatccttcccccggtgctaaatgcgctctccgaagaaactgatgatactggtgtggccaagacatctctaacc |
306688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 122 - 240
Target Start/End: Complemental strand, 13308547 - 13308429
Alignment:
| Q |
122 |
atactcttcactcaaatttagatctttgaagtcgacgaaagatggtttcagccaattctgagtacaaatcaaagcttccgccatttccagactcaacgag |
221 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| | |||||| ||||| |||||||| ||| ||| ||||||||||| |||||| | || |||| ||| |
|
|
| T |
13308547 |
atactcttcactcaaattaagatctttgaagtcaatgaaagaaggttttagccaattttgacaacatatcaaagcttcagccattgtcggattcaaggag |
13308448 |
T |
|
| Q |
222 |
ctcctatatgtgtctaaaa |
240 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
13308447 |
ctcctatatgtgtctaaaa |
13308429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 117 - 240
Target Start/End: Original strand, 14593017 - 14593140
Alignment:
| Q |
117 |
agctcatactcttcactcaaatttagatctttgaagtcgacgaaagatggtttcagccaattctgagtacaaatcaaagcttccgccatttccagactca |
216 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||| | |||| | ||||| || ||||| ||| ||| ||||||||||| |||||| | |||||| |
|
|
| T |
14593017 |
agctgatactcttcactcaaattaagatctttgaagtcaatgaaaaaaggttttagtcaattttgacaacatatcaaagcttcagccattgtcggactca |
14593116 |
T |
|
| Q |
217 |
acgagctcctatatgtgtctaaaa |
240 |
Q |
| |
|
| || ||||||||||||||||||| |
|
|
| T |
14593117 |
aggaactcctatatgtgtctaaaa |
14593140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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