View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3895_high_9 (Length: 306)
Name: NF3895_high_9
Description: NF3895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3895_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 231 - 289
Target Start/End: Complemental strand, 31861951 - 31861893
Alignment:
| Q |
231 |
cttatttttgaacatttttctcttatgagtgtgacacataagagagcgtgatcaatatt |
289 |
Q |
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| T |
31861951 |
cttatttttgaacatttttctcttatgagtgtgacacataagagagcgtgatcaatatt |
31861893 |
T |
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Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 31862152 - 31862100
Alignment:
| Q |
27 |
acttcgtatattttttagtggtctcttaggcacgccttgtgcttttgggattac |
80 |
Q |
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| T |
31862152 |
acttcgtatattttt-agtggtctcttaggcacgccttgtgcttttgggattac |
31862100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 187
Target Start/End: Complemental strand, 31862025 - 31861995
Alignment:
| Q |
157 |
caaattaaatagtatattactttgaatgtag |
187 |
Q |
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| T |
31862025 |
caaattaaatagtatattactttgaatgtag |
31861995 |
T |
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Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 41542925 - 41542838
Alignment:
| Q |
19 |
actgctacacttcgtatattttttagtggtctcttaggcacgccttgtgcttttgggattaccatgtctgtggttatataattccatttt |
108 |
Q |
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| T |
41542925 |
actgctacactt--tatattttttagtggtctcttaggcaaatcttgtgcttttgagattgctatgtttgtggttatataattccatttt |
41542838 |
T |
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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 8639301 - 8639215
Alignment:
| Q |
23 |
ctacacttcgtatattttttagtggtctcttaggcacgccttgtgcttttgggattaccatgtctgtggttatataattccattttgact |
112 |
Q |
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| T |
8639301 |
ctacactttgtacattttttagtggtctcttaggcacgccttgtacttttagaattgatat---tgtggttatataataccattttgact |
8639215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 112
Target Start/End: Complemental strand, 33589789 - 33589731
Alignment:
| Q |
54 |
aggcacgccttgtgcttttgggattaccatgtctgtggttatataattccattttgact |
112 |
Q |
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| T |
33589789 |
aggcacaccttatgtttttgggattactatgtttgtggttatataatttcattttgact |
33589731 |
T |
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Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 4406571 - 4406480
Alignment:
| Q |
17 |
acactgctacacttcgtatattttttagtggtctcttaggcacgccttgtgcttttgggattaccatgtctgtggttatataattccattttg |
109 |
Q |
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| T |
4406571 |
acactgctacactttgtaaattttc-agtggtttcttaggcccgccttgtgtttttggaattgatatgtttatggttatataattccattttg |
4406480 |
T |
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