View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3895_low_12 (Length: 288)

Name: NF3895_low_12
Description: NF3895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3895_low_12
NF3895_low_12
[»] chr3 (16 HSPs)
chr3 (8-273)||(51920700-51920961)
chr3 (25-74)||(15287567-15287616)
chr3 (23-74)||(9831261-9831312)
chr3 (23-73)||(14746902-14746951)
chr3 (24-73)||(14746040-14746089)
chr3 (24-73)||(43453438-43453487)
chr3 (26-75)||(54308454-54308503)
chr3 (32-76)||(55324-55368)
chr3 (24-72)||(20807936-20807984)
chr3 (25-73)||(43454161-43454209)
chr3 (26-72)||(9830573-9830619)
chr3 (23-72)||(4706957-4707006)
chr3 (27-72)||(47677523-47677568)
chr3 (25-73)||(16076210-16076258)
chr3 (25-73)||(41419619-41419667)
chr3 (25-69)||(53344017-53344061)
[»] chr4 (15 HSPs)
chr4 (23-273)||(42792773-42793023)
chr4 (25-72)||(25725809-25725856)
chr4 (34-73)||(53777830-53777869)
chr4 (27-73)||(53778415-53778461)
chr4 (23-75)||(6056997-6057049)
chr4 (24-66)||(21837388-21837430)
chr4 (24-73)||(13924792-13924841)
chr4 (25-74)||(14527575-14527624)
chr4 (32-73)||(18363653-18363694)
chr4 (25-70)||(21280035-21280080)
chr4 (32-73)||(26354232-26354273)
chr4 (19-76)||(34450809-34450866)
chr4 (32-73)||(36599234-36599275)
chr4 (25-73)||(21281161-21281209)
chr4 (24-72)||(24666128-24666176)
[»] chr5 (9 HSPs)
chr5 (32-273)||(39466892-39467133)
chr5 (23-73)||(23253486-23253536)
chr5 (25-73)||(35524122-35524170)
chr5 (24-73)||(39937906-39937955)
chr5 (25-72)||(24565573-24565620)
chr5 (25-72)||(24606609-24606656)
chr5 (23-70)||(40372163-40372210)
chr5 (24-66)||(23257318-23257360)
chr5 (23-64)||(27345928-27345969)
[»] chr7 (19 HSPs)
chr7 (32-273)||(42817805-42818046)
chr7 (25-73)||(41965777-41965825)
chr7 (23-73)||(767966-768016)
chr7 (25-69)||(767136-767180)
chr7 (25-73)||(33261413-33261461)
chr7 (25-74)||(3850365-3850414)
chr7 (25-73)||(41965112-41965160)
chr7 (23-75)||(42818551-42818603)
chr7 (25-76)||(3314955-3315006)
chr7 (34-69)||(27918614-27918649)
chr7 (25-72)||(28007157-28007204)
chr7 (32-74)||(36611558-36611600)
chr7 (23-72)||(18652889-18652938)
chr7 (19-72)||(24873745-24873798)
chr7 (25-70)||(46491691-46491736)
chr7 (25-73)||(24874578-24874626)
chr7 (24-72)||(36611495-36611543)
chr7 (24-72)||(41358310-41358358)
chr7 (25-73)||(41617981-41618029)
[»] chr2 (5 HSPs)
chr2 (19-69)||(18537497-18537547)
chr2 (32-73)||(44296867-44296908)
chr2 (32-74)||(20606920-20606962)
chr2 (24-69)||(7754011-7754056)
chr2 (173-273)||(44296905-44297005)
[»] chr8 (16 HSPs)
chr8 (24-73)||(5434031-5434080)
chr8 (25-73)||(26847097-26847145)
chr8 (23-73)||(36403025-36403075)
chr8 (32-76)||(19220920-19220964)
chr8 (32-67)||(202584-202619)
chr8 (32-67)||(317421-317456)
chr8 (25-76)||(4402284-4402335)
chr8 (25-72)||(22632969-22633016)
chr8 (23-74)||(42663275-42663326)
chr8 (26-72)||(22632323-22632369)
chr8 (23-73)||(36402199-36402249)
chr8 (25-74)||(26847720-26847769)
chr8 (25-70)||(35399178-35399223)
chr8 (23-68)||(40599885-40599930)
chr8 (24-72)||(35399944-35399992)
chr8 (25-73)||(44376643-44376691)
[»] chr1 (10 HSPs)
chr1 (32-73)||(5491336-5491377)
chr1 (24-73)||(13416335-13416384)
chr1 (25-72)||(26240872-26240919)
chr1 (25-70)||(31109239-31109284)
chr1 (25-70)||(31116687-31116732)
chr1 (24-67)||(16449554-16449597)
chr1 (24-67)||(16459128-16459171)
chr1 (25-73)||(12449312-12449360)
chr1 (20-72)||(26240109-26240161)
chr1 (47-75)||(34026968-34026996)
[»] chr6 (3 HSPs)
chr6 (32-73)||(2138484-2138525)
chr6 (24-73)||(10966380-10966429)
chr6 (19-72)||(16718995-16719048)
[»] scaffold0627 (1 HSPs)
scaffold0627 (32-73)||(6471-6512)
[»] scaffold0006 (1 HSPs)
scaffold0006 (32-73)||(285185-285226)


Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 8 - 273
Target Start/End: Original strand, 51920700 - 51920961
Alignment:
Q  8 aaataatactatttgttggtggagtctaggatgagggtccaattaagtccctcaccggtggaccactttttatacatcatcagatttgatgaaaggttcg 107  Q
    ||||||||||||||||||||    |||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  51920700 aaataatactatttgttggtt---tctagggtgagggtccaattaagtccctcaccgatggaccactttttatacatcattagatttgatgaaaggttcg 51920796  T
Q  108 gattttttaaaaataaaaatagaactttgaaagattgctacacacaatcatgccccccatatcttccacaatactcataggagatcttgatacttcatat 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  51920797 gattttttaaaaataaaaatagaactttgaaagattgctacacacaatcatg-cccccatatcttccacaatactcataggagatctggatacttcatat 51920895  T
Q  208 gcggctgtcgcgtaaattaagcatacagagaagatattgttccggctagaaaatgaaattgaacct 273  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  51920896 gcggctgtcgcgtaaattaaacatacagagaagatattgttccggctataaaatgaaattgaacct 51920961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 15287567 - 15287616
Alignment:
Q  25 ggtggagtctaggatgagggtccaattaagtccctcaccggtggaccact 74  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  15287567 ggtggattctagggtgagggtccaattaagtccctcaccggtggaccact 15287616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 9831312 - 9831261
Alignment:
Q  23 ttggtggagtctaggatgagggtccaattaagtccctcaccggtggaccact 74  Q
    |||||||| ||| || |||||||||||||||||||||||| |||||||||||    
T  9831312 ttggtggattctggggtgagggtccaattaagtccctcactggtggaccact 9831261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 14746951 - 14746902
Alignment:
Q  23 ttggtggagtctaggatgagggtccaattaagtccctcaccggtggaccac 73  Q
    |||||||| |||||| ||||||||||||||||||||||| |||||||||||    
T  14746951 ttggtggattctagg-tgagggtccaattaagtccctcatcggtggaccac 14746902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 14746040 - 14746089
Alignment:
Q  24 tggtggagtctaggatgagggtccaattaagtccctcaccggtggaccac 73  Q
    ||||||| |||||| ||||||||||||||| |||||| ||||||||||||    
T  14746040 tggtggattctagggtgagggtccaattaaatccctccccggtggaccac 14746089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 43453438 - 43453487
Alignment:
Q  24 tggtggagtctaggatgagggtccaattaagtccctcaccggtggaccac 73  Q
    ||||||| |||||| ||||||||||||||| |||||||||| ||||||||    
T  43453438 tggtggattctagggtgagggtccaattaaatccctcaccgctggaccac 43453487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 54308454 - 54308503
Alignment:
Q  26 gtggagtctaggatgagggtccaattaagtccctcaccggtggaccactt 75  Q
    ||||| |||||| ||||||| ||||||||||||||||||||| |||||||    
T  54308454 gtggattctagggtgagggttcaattaagtccctcaccggtgaaccactt 54308503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 55368 - 55324
Alignment:
Q  32 tctaggatgagggtccaattaagtccctcaccggtggaccacttt 76  Q
    |||||||||||||| |||||||||||||||||| | |||||||||    
T  55368 tctaggatgagggttcaattaagtccctcaccgatagaccacttt 55324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 20807936 - 20807984
Alignment:
Q  24 tggtggagtctaggatgagggtccaattaagtccctcaccggtggacca 72  Q
    ||||||| |||||| ||||||| ||||||||||||||||||||| ||||    
T  20807936 tggtggattctagggtgagggttcaattaagtccctcaccggtgtacca 20807984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 43454209 - 43454161
Alignment:
Q  25 ggtggagtctaggatgagggtccaattaagtccctcaccggtggaccac 73  Q
    |||||| |||||| |||||||||||||| |||||||||| |||||||||    
T  43454209 ggtggattctagggtgagggtccaattaggtccctcacctgtggaccac 43454161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 9830573 - 9830619
Alignment:
Q  26 gtggagtctaggatgagggtccaattaagtccctcaccggtggacca 72  Q
    ||||| ||| || ||||||| ||||||||||||||||||||||||||    
T  9830573 gtggattctcgggtgagggttcaattaagtccctcaccggtggacca 9830619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 4707006 - 4706957
Alignment:
Q  23 ttggtggagtctaggatgagggtccaattaagtccctcaccggtggacca 72  Q
    |||||||| |||||| ||||||| | ||||||||||||||||||| ||||    
T  4707006 ttggtggattctagggtgagggttctattaagtccctcaccggtgtacca 4706957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 47677523 - 47677568
Alignment:
Q  27 tggagtctaggatgagggtccaattaagtccctcaccggtggacca 72  Q
    |||| |||||||||||||| |||||||||||||||| |||| ||||    
T  47677523 tggattctaggatgagggttcaattaagtccctcactggtgaacca 47677568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 16076210 - 16076258
Alignment:
Q  25 ggtggagtctaggatgagggtccaattaagtccctcaccggtggaccac 73  Q
    |||||| |||||| |||||||||||||| ||||||||||  ||||||||    
T  16076210 ggtggattctagggtgagggtccaattaggtccctcaccaatggaccac 16076258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 41419667 - 41419619
Alignment:
Q  25 ggtggagtctaggatgagggtccaattaagtccctcaccggtggaccac 73  Q
    |||||| |||||  |||||| ||||||| ||||||||||||||||||||    
T  41419667 ggtggattctagtgtgaggggccaattaggtccctcaccggtggaccac 41419619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 53344017 - 53344061
Alignment:
Q  25 ggtggagtctaggatgagggtccaattaagtccctcaccggtgga 69  Q
    |||||| |||||||||||||  |||| ||||||||||||||||||    
T  53344017 ggtggattctaggatgagggatcaatcaagtccctcaccggtgga 53344061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 23 - 273
Target Start/End: Original strand, 42792773 - 42793023
Alignment:
Q  23 ttggtggagtctaggatgagggtccaattaagtccctcaccggtggaccactttttatacatcatcagatttgatgaaaggttcggattttttaaaaata 122  Q
    |||||||| |||||| |||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  42792773 ttggtggattctagggtgagggtccaattaagtccctcaccgatggatcactttttattcatcatcagatttgatgaaaggttcggattttttaaaaata 42792872  T
Q  123 aaaatagaactttgaaagattgctacacacaatcatgccccccatatcttccacaatactcataggagatcttgatacttcatatgcggctgtcgcgtaa 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||    
T  42792873 aaaatagaactttgaaagattgctacacacaatcatgccccccatatcttccacaatactcataggaaatctggatacttcatatgcagctgtcgcgtaa 42792972  T
Q  223 attaagcatacagagaagatattgttccggctagaaaatgaaattgaacct 273  Q
     ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  42792973 gttaagcatacagagaagatattgttccggcttgaaaatgaaattgaacct 42793023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 25725856 - 25725809
Alignment:
Q  25 ggtggagtctaggatgagggtccaattaagtccctcaccggtggacca 72  Q
    ||||||||||||| ||||||  ||||||||||||||||||||||||||    
T  25725856 ggtggagtctagggtgagggagcaattaagtccctcaccggtggacca 25725809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 73
Target Start/End: Original strand, 53777830 - 53777869
Alignment:
Q  34 taggatgagggtccaattaagtccctcaccggtggaccac 73  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  53777830 taggatgagggtccaattaagtctctcaccggtggaccac 53777869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 73
Target Start/End: Complemental strand, 53778461 - 53778415
Alignment:
Q  27 tggagtctaggatgagggtccaattaagtccctcaccggtggaccac 73  Q
    |||| |||||| |||||||||| ||||||||||||||||||||||||    
T  53778461 tggattctagggtgagggtccatttaagtccctcaccggtggaccac 53778415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 6057049 - 6056997
Alignment:
Q  23 ttggtggagtctaggatgagggtccaattaagtccctcaccggtggaccactt 75  Q
    |||||||| |||||| ||||||| | | |||||||||||||||||||||||||    
T  6057049 ttggtggattctagggtgagggttctactaagtccctcaccggtggaccactt 6056997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 66
Target Start/End: Original strand, 21837388 - 21837430
Alignment:
Q  24 tggtggagtctaggatgagggtccaattaagtccctcaccggt 66  Q
    ||||||| |||||| ||||||||||| ||||||||||||||||    
T  21837388 tggtggattctagggtgagggtccaactaagtccctcaccggt 21837430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 13924792 - 13924841
Alignment:
Q  24 tggtggagtctaggatgagggtccaattaagtccctcaccggtggaccac 73  Q
    ||||||| |||||| ||||||  ||||||| |||||||||||||||||||    
T  13924792 tggtggattctagggtgagggctcaattaaatccctcaccggtggaccac 13924841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 14527624 - 14527575
Alignment:
Q  25 ggtggagtctaggatgagggtccaattaagtccctcaccggtggaccact 74  Q
    |||||| |||||| ||||||  ||||||||||||||||||||| ||||||    
T  14527624 ggtggattctagggtgagggatcaattaagtccctcaccggtgaaccact 14527575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 18363694 - 18363653
Alignment:
Q  32 tctaggatgagggtccaattaagtccctcaccggtggaccac 73  Q
    |||||| ||||||| ||||||||| |||||||||||||||||    
T  18363694 tctagggtgagggttcaattaagttcctcaccggtggaccac 18363653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 21280035 - 21280080
Alignment:
Q  25 ggtggagtctaggatgagggtccaattaagtccctcaccggtggac 70  Q
    |||||| ||||||||||||||||||||| |||||| || |||||||    
T  21280035 ggtggattctaggatgagggtccaattaggtcccttactggtggac 21280080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 26354273 - 26354232
Alignment:
Q  32 tctaggatgagggtccaattaagtccctcaccggtggaccac 73  Q
    |||||| ||||||| |||||||||||||||| ||||||||||    
T  26354273 tctagggtgagggttcaattaagtccctcacaggtggaccac 26354232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 34450809 - 34450866
Alignment:
Q  19 tttgttggtggagtctaggatgagggtccaattaagtccctcaccggtggaccacttt 76  Q
    ||||| |||| | |||||| ||||||  ||||||||||||||||||||||| ||||||    
T  34450809 tttgtaggtgaattctagggtgagggatcaattaagtccctcaccggtggagcacttt 34450866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 36599234 - 36599275
Alignment:
Q  32 tctaggatgagggtccaattaagtccctcaccggtggaccac 73  Q
    |||||| ||||||| ||||||||| |||||||||||||||||    
T  36599234 tctagggtgagggttcaattaagttcctcaccggtggaccac 36599275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 21281209 - 21281161
Alignment:
Q  25 ggtggagtctaggatgagggtccaattaagtccctcaccggtggaccac 73  Q
    |||||| |||||| ||||||||||||||  ||||||| |||||||||||    
T  21281209 ggtggattctagggtgagggtccaattagatccctcatcggtggaccac 21281161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 24666128 - 24666176
Alignment:
Q  24 tggtggagtctaggatgagggtccaattaagtccctcaccggtggacca 72  Q
    ||||||| |||||| ||||||  ||||||||||||||||||||| ||||    
T  24666128 tggtggattctagggtgagggatcaattaagtccctcaccggtgaacca 24666176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 32 - 273
Target Start/End: Original strand, 39466892 - 39467133
Alignment:
Q  32 tctaggatgagggtccaattaagtccctcaccggtggaccactttttatacatcatcagatttgatgaaaggttcggattttttaaaaataaaaatagaa 131  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  39466892 tctagggtgagggtccaattaagtccctcaccggtggaccactttttatacatcatcagatttgatgaaaggtttgaattttttaaaaataaaaatagaa 39466991  T
Q  132 ctttgaaagattgctacacacaatcatgccccccatatcttccacaatactcataggagatcttgatacttcatatgcggctgtcgcgtaaattaagcat 231  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||| ||||||||    
T  39466992 ctttgaaagggtgctacacacaatcatgccccccatatcttccacaatactcataggagatctgaatacttcatatgcggttgtcgcgtaagttaagcat 39467091  T
Q  232 acagagaagatattgttccggctagaaaatgaaattgaacct 273  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  39467092 acagagaagatattgttccgactagaaaatgaaattgaacct 39467133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 23253536 - 23253486
Alignment:
Q  23 ttggtggagtctaggatgagggtccaattaagtccctcaccggtggaccac 73  Q
    |||||||| |||||| ||||||||||||||||||||||||||||| |||||    
T  23253536 ttggtggattctagggtgagggtccaattaagtccctcaccggtgaaccac 23253486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 35524122 - 35524170
Alignment:
Q  25 ggtggagtctaggatgagggtccaattaagtccctcaccggtggaccac 73  Q
    |||||| ||||||||||| || |||||||||||||||||||||||||||    
T  35524122 ggtggattctaggatgagagttcaattaagtccctcaccggtggaccac 35524170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 39937955 - 39937906
Alignment:
Q  24 tggtggagtctaggatgagggtccaattaagtccctcaccggtggaccac 73  Q
    ||||||| |||||| ||||||| || ||||||||||||||||||||||||    
T  39937955 tggtggattctagggtgagggttcagttaagtccctcaccggtggaccac 39937906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 24565573 - 24565620
Alignment:
Q  25 ggtggagtctaggatgagggtccaattaagtccctcaccggtggacca 72  Q
    |||||| |||||| ||||||| ||||||| ||||||||||||||||||    
T  24565573 ggtggattctagggtgagggttcaattaaatccctcaccggtggacca 24565620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 24606609 - 24606656
Alignment:
Q  25 ggtggagtctaggatgagggtccaattaagtccctcaccggtggacca 72  Q
    |||||| |||||| ||||||| ||||||| ||||||||||||||||||    
T  24606609 ggtggattctagggtgagggttcaattaaatccctcaccggtggacca 24606656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 40372210 - 40372163
Alignment:
Q  23 ttggtggagtctaggatgagggtccaattaagtccctcaccggtggac 70  Q
    |||||||| |||||| ||||||| ||||||||| ||||||||||||||    
T  40372210 ttggtggattctagggtgagggttcaattaagttcctcaccggtggac 40372163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 66
Target Start/End: Original strand, 23257318 - 23257360
Alignment:
Q  24 tggtggagtctaggatgagggtccaattaagtccctcaccggt 66  Q
    ||||||| |||||  ||||||||||||||||||||||||||||    
T  23257318 tggtggattctagagtgagggtccaattaagtccctcaccggt 23257360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 27345969 - 27345928
Alignment:
Q  23 ttggtggagtctaggatgagggtccaattaagtccctcaccg 64  Q
    |||||||| |||||| ||||||| ||||||||||||||||||    
T  27345969 ttggtggattctagggtgagggttcaattaagtccctcaccg 27345928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 32 - 273
Target Start/End: Original strand, 42817805 - 42818046
Alignment:
Q  32 tctaggatgagggtccaattaagtccctcaccggtggaccactttttatacatcatcagatttgatgaaaggttcggattttttaaaaataaaaatagaa 131  Q
    |||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  42817805 tctagggtgatggtccaattaagtccctcatcggtggaccactttttatacatcatcagatttgatgaaaggttcggattttttaaaaataaaattagaa 42817904  T
Q  132 ctttgaaagattgctacacacaatcatgccccccatatcttccacaatactcataggagatcttgatacttcatatgcggctgtcgcgtaaattaagcat 231  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||| ||||||||||||||||||| ||||  ||    
T  42817905 ctttgaaagattgctacacacaatcatgccccccatatattccacaatactcataggagatctgaatactttatatgcggctgtcgcgtaagttaaatat 42818004  T
Q  232 acagagaagatattgttccggctagaaaatgaaattgaacct 273  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  42818005 acagagaagacattgttccggctagaaaatgaaattgaacct 42818046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 41965825 - 41965777
Alignment:
Q  25 ggtggagtctaggatgagggtccaattaagtccctcaccggtggaccac 73  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||    
T  41965825 ggtggattctagggtgagggtccaattaagtccctcaccggtggaccac 41965777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 768016 - 767966
Alignment:
Q  23 ttggtggagtctaggatgagggtccaattaagtccctcaccggtggaccac 73  Q
    |||||||| | |||| |||||||||||||||||||||||||||||||||||    
T  768016 ttggtggattttagggtgagggtccaattaagtccctcaccggtggaccac 767966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 767136 - 767180
Alignment:
Q  25 ggtggagtctaggatgagggtccaattaagtccctcaccggtgga 69  Q
    |||||| |||||| |||||||||||||||||||||||||||||||    
T  767136 ggtggattctagggtgagggtccaattaagtccctcaccggtgga 767180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 33261461 - 33261413
Alignment:
Q  25 ggtggagtctaggatgagggtccaattaagtccctcaccggtggaccac 73  Q
    |||||| ||||||||||||||||||||||||||||||| | ||||||||    
T  33261461 ggtggattctaggatgagggtccaattaagtccctcactgatggaccac 33261413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 3850414 - 3850365
Alignment:
Q  25 ggtggagtctaggatgagggtccaattaagtccctcaccggtggaccact 74  Q
    |||||| |||||| |||||| |||||||| ||||||||||||||||||||    
T  3850414 ggtggaatctagggtgaggggccaattaaatccctcaccggtggaccact 3850365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 41965112 - 41965160
Alignment:
Q  25 ggtggagtctaggatgagggtccaattaagtccctcaccggtggaccac 73  Q
    |||||| |||||| |||||||||||||||||||||||  ||||||||||    
T  41965112 ggtggattctagggtgagggtccaattaagtccctcattggtggaccac 41965160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 42818603 - 42818551
Alignment:
Q  23 ttggtggagtctaggatgagggtccaattaagtccctcaccggtggaccactt 75  Q
    |||||| | |||||| ||||||| ||||||||||||||||||||||| |||||    
T  42818603 ttggtgaattctagggtgagggttcaattaagtccctcaccggtggatcactt 42818551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 3314955 - 3315006
Alignment:
Q  25 ggtggagtctaggatgagggtccaattaagtccctcaccggtggaccacttt 76  Q
    |||||| |||| | ||||||| ||||||||||||||||||||| ||||||||    
T  3314955 ggtggattctacggtgagggttcaattaagtccctcaccggtgtaccacttt 3315006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 69
Target Start/End: Complemental strand, 27918649 - 27918614
Alignment:
Q  34 taggatgagggtccaattaagtccctcaccggtgga 69  Q
    ||||||||||||||||||| ||||||||||||||||    
T  27918649 taggatgagggtccaattaggtccctcaccggtgga 27918614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 28007157 - 28007204
Alignment:
Q  25 ggtggagtctaggatgagggtccaattaagtccctcaccggtggacca 72  Q
    |||||| |||||| ||||||  ||||||||||||||||||||||||||    
T  28007157 ggtggattctagggtgagggagcaattaagtccctcaccggtggacca 28007204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 74
Target Start/End: Original strand, 36611558 - 36611600
Alignment:
Q  32 tctaggatgagggtccaattaagtccctcaccggtggaccact 74  Q
    |||||| ||||||| ||||||||||||||||||||| ||||||    
T  36611558 tctagggtgagggttcaattaagtccctcaccggtgaaccact 36611600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 18652889 - 18652938
Alignment:
Q  23 ttggtggagtctaggatgagggtccaattaagtccctcaccggtggacca 72  Q
    |||||||| |||||| ||| ||||| ||||| ||||||||||||||||||    
T  18652889 ttggtggattctagggtgaaggtcctattaaatccctcaccggtggacca 18652938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 24873745 - 24873798
Alignment:
Q  19 tttgttggtggagtctaggatgagggtccaattaagtccctcaccggtggacca 72  Q
    ||||| |||||| |||||| |||||||||||||| |||||||| | ||||||||    
T  24873745 tttgtaggtggattctagggtgagggtccaattaggtccctcatcagtggacca 24873798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 46491736 - 46491691
Alignment:
Q  25 ggtggagtctaggatgagggtccaattaagtccctcaccggtggac 70  Q
    |||||| |||||| ||||||| ||| ||||||||||||||||||||    
T  46491736 ggtggattctagggtgagggttcaactaagtccctcaccggtggac 46491691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 24874626 - 24874578
Alignment:
Q  25 ggtggagtctaggatgagggtccaattaagtccctcaccggtggaccac 73  Q
    |||||| |||||| ||||||| |||||| |||||||| |||||||||||    
T  24874626 ggtggattctagggtgagggttcaattaggtccctcatcggtggaccac 24874578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 36611543 - 36611495
Alignment:
Q  24 tggtggagtctaggatgagggtccaattaagtccctcaccggtggacca 72  Q
    ||||||| |||||| ||||||| ||||||| || |||||||||||||||    
T  36611543 tggtggattctagggtgagggttcaattaaatctctcaccggtggacca 36611495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 41358310 - 41358358
Alignment:
Q  24 tggtggagtctaggatgagggtccaattaagtccctcaccggtggacca 72  Q
    ||||||| ||| |||||||||  |||||||||||||||||| |||||||    
T  41358310 tggtggattcttggatgagggatcaattaagtccctcaccgatggacca 41358358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 41618029 - 41617981
Alignment:
Q  25 ggtggagtctaggatgagggtccaattaagtccctcaccggtggaccac 73  Q
    |||||| |||||  |||||||||||||||||| |||||| |||||||||    
T  41618029 ggtggattctagagtgagggtccaattaagtctctcaccagtggaccac 41617981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 18537547 - 18537497
Alignment:
Q  19 tttgttggtggagtctaggatgagggtccaattaagtccctcaccggtgga 69  Q
    |||||||||||| |||| ||||||||| |||||||||||||||||||||||    
T  18537547 tttgttggtggattctatgatgagggttcaattaagtccctcaccggtgga 18537497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 44296867 - 44296908
Alignment:
Q  32 tctaggatgagggtccaattaagtccctcaccggtggaccac 73  Q
    |||||| |||||||||||||||||||||||| ||||||||||    
T  44296867 tctagggtgagggtccaattaagtccctcactggtggaccac 44296908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 74
Target Start/End: Complemental strand, 20606962 - 20606920
Alignment:
Q  32 tctaggatgagggtccaattaagtccctcaccggtggaccact 74  Q
    |||||| ||||||| ||||||||||||||||||||| ||||||    
T  20606962 tctagggtgagggttcaattaagtccctcaccggtgaaccact 20606920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 7754011 - 7754056
Alignment:
Q  24 tggtggagtctaggatgagggtccaattaagtccctcaccggtgga 69  Q
    ||||||| |||||| |||||||||||||| ||||||| ||||||||    
T  7754011 tggtggattctagggtgagggtccaattaggtccctccccggtgga 7754056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 273
Target Start/End: Original strand, 44296905 - 44297005
Alignment:
Q  173 ccacaatactcataggagatcttgatacttcatatgcggctgtcgcgtaaattaagcatacagagaagatattgttccggctagaaaatgaaattgaacc 272  Q
    ||||||||| |||| |||||||  ||| ||||||  ||| ||| |||||| || |  ||||||| |||||   ||| |||||||||||||||||||||||    
T  44296905 ccacaatacccatatgagatctgaataattcatacacggttgttgcgtaagttcaatatacagaaaagatgaagttgcggctagaaaatgaaattgaacc 44297004  T
Q  273 t 273  Q
    |    
T  44297005 t 44297005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 5434031 - 5434080
Alignment:
Q  24 tggtggagtctaggatgagggtccaattaagtccctcaccggtggaccac 73  Q
    ||||||| |||||| ||||||||||||||||||| |||||||||||||||    
T  5434031 tggtggattctagggtgagggtccaattaagtccttcaccggtggaccac 5434080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 26847097 - 26847145
Alignment:
Q  25 ggtggagtctaggatgagggtccaattaagtccctcaccggtggaccac 73  Q
    |||||| |||||| ||||||||||||||||||||||||||||| |||||    
T  26847097 ggtggattctagggtgagggtccaattaagtccctcaccggtgaaccac 26847145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 36403075 - 36403025
Alignment:
Q  23 ttggtggagtctaggatgagggtccaattaagtccctcaccggtggaccac 73  Q
    |||||||| |||||  |||||||||||||| ||||||||||||||||||||    
T  36403075 ttggtggattctagagtgagggtccaattaggtccctcaccggtggaccac 36403025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 19220920 - 19220964
Alignment:
Q  32 tctaggatgagggtccaattaagtccctcaccggtggaccacttt 76  Q
    |||||||||||||| ||||||||||| |||||||| |||||||||    
T  19220920 tctaggatgagggttcaattaagtccgtcaccggtagaccacttt 19220964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 67
Target Start/End: Original strand, 202584 - 202619
Alignment:
Q  32 tctaggatgagggtccaattaagtccctcaccggtg 67  Q
    |||||||||||||| |||||||||||||||||||||    
T  202584 tctaggatgagggttcaattaagtccctcaccggtg 202619  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 67
Target Start/End: Original strand, 317421 - 317456
Alignment:
Q  32 tctaggatgagggtccaattaagtccctcaccggtg 67  Q
    |||||||||||||| |||||||||||||||||||||    
T  317421 tctaggatgagggttcaattaagtccctcaccggtg 317456  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 4402335 - 4402284
Alignment:
Q  25 ggtggagtctaggatgagggtccaattaagtccctcaccggtggaccacttt 76  Q
    |||||| |||||| ||||||| | ||||||||||||||||||| ||||||||    
T  4402335 ggtggattctagggtgagggttctattaagtccctcaccggtgaaccacttt 4402284  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 22633016 - 22632969
Alignment:
Q  25 ggtggagtctaggatgagggtccaattaagtccctcaccggtggacca 72  Q
    |||||| |||||| ||||||  ||||||||||||||||||||||||||    
T  22633016 ggtggattctagggtgagggatcaattaagtccctcaccggtggacca 22632969  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 42663275 - 42663326
Alignment:
Q  23 ttggtggagtctaggatgagggtccaattaagtccctcaccggtggaccact 74  Q
    |||||||| |||||| |||| ||||||||||||| |||||||||||| ||||    
T  42663275 ttggtggattctagggtgagagtccaattaagtctctcaccggtggatcact 42663326  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 22632323 - 22632369
Alignment:
Q  26 gtggagtctaggatgagggtccaattaagtccctcaccggtggacca 72  Q
    ||||| |||||| ||||||  ||||||||||||||||||||||||||    
T  22632323 gtggattctagggtgagggatcaattaagtccctcaccggtggacca 22632369  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 36402199 - 36402249
Alignment:
Q  23 ttggtggagtctaggatgagggtccaattaagtccctcaccggtggaccac 73  Q
    |||||||| | |||| |||||||||||||| ||||| ||||||||||||||    
T  36402199 ttggtggattttagggtgagggtccaattaggtcccacaccggtggaccac 36402249  T

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Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 26847769 - 26847720
Alignment:
Q  25 ggtggagtctaggatgagggtccaattaagtccctcaccggtggaccact 74  Q
    |||||| |||||||||||||  ||||||||| ||||||||||| ||||||    
T  26847769 ggtggattctaggatgagggatcaattaagttcctcaccggtgaaccact 26847720  T

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Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 35399178 - 35399223
Alignment:
Q  25 ggtggagtctaggatgagggtccaattaagtccctcaccggtggac 70  Q
    |||||| |||||| |||||| |||||||| ||||||||||||||||    
T  35399178 ggtggaatctagggtgaggggccaattaaatccctcaccggtggac 35399223  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 40599885 - 40599930
Alignment:
Q  23 ttggtggagtctaggatgagggtccaattaagtccctcaccggtgg 68  Q
    |||||||| |||||||||||||| |||  |||||||||||||||||    
T  40599885 ttggtggattctaggatgagggttcaaacaagtccctcaccggtgg 40599930  T

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Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 35399992 - 35399944
Alignment:
Q  24 tggtggagtctaggatgagggtccaattaagtccctcaccggtggacca 72  Q
    ||||||| |||||||||||||  |||| || ||||||||||||||||||    
T  35399992 tggtggattctaggatgagggatcaatcaaatccctcaccggtggacca 35399944  T

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Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 44376643 - 44376691
Alignment:
Q  25 ggtggagtctaggatgagggtccaattaagtccctcaccggtggaccac 73  Q
    |||||| ||||||  ||||||||||||| |||||||| |||||||||||    
T  44376643 ggtggattctagggcgagggtccaattacgtccctcatcggtggaccac 44376691  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 5491377 - 5491336
Alignment:
Q  32 tctaggatgagggtccaattaagtccctcaccggtggaccac 73  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  5491377 tctaggatgagggtccaattaggtccctcaccggtggaccac 5491336  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 13416384 - 13416335
Alignment:
Q  24 tggtggagtctaggatgagggtccaattaagtccctcaccggtggaccac 73  Q
    ||||||| ||||||||||||||||||||| ||||||| ||||||||||||    
T  13416384 tggtggattctaggatgagggtccaattaggtccctcgccggtggaccac 13416335  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 26240919 - 26240872
Alignment:
Q  25 ggtggagtctaggatgagggtccaattaagtccctcaccggtggacca 72  Q
    |||||| |||||| ||||||| ||||||||||||||||||||||||||    
T  26240919 ggtggattctagggtgagggttcaattaagtccctcaccggtggacca 26240872  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 31109239 - 31109284
Alignment:
Q  25 ggtggagtctaggatgagggtccaattaagtccctcaccggtggac 70  Q
    |||||| |||||| |||||||||||||| |||||||||||||||||    
T  31109239 ggtggattctagggtgagggtccaattaggtccctcaccggtggac 31109284  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 31116732 - 31116687
Alignment:
Q  25 ggtggagtctaggatgagggtccaattaagtccctcaccggtggac 70  Q
    |||||| |||||| |||||||||||||| |||||||||||||||||    
T  31116732 ggtggattctagggtgagggtccaattaggtccctcaccggtggac 31116687  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 16449554 - 16449597
Alignment:
Q  24 tggtggagtctaggatgagggtccaattaagtccctcaccggtg 67  Q
    ||||||| |||||| ||||||| |||||||||||||||||||||    
T  16449554 tggtggattctagggtgagggttcaattaagtccctcaccggtg 16449597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 16459128 - 16459171
Alignment:
Q  24 tggtggagtctaggatgagggtccaattaagtccctcaccggtg 67  Q
    ||||||| |||||| ||||||| |||||||||||||||||||||    
T  16459128 tggtggattctagggtgagggttcaattaagtccctcaccggtg 16459171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 12449360 - 12449312
Alignment:
Q  25 ggtggagtctaggatgagggtccaattaagtccctcaccggtggaccac 73  Q
    |||||| | |||| ||||||  |||||||||||||||||||||||||||    
T  12449360 ggtggattttagggtgagggatcaattaagtccctcaccggtggaccac 12449312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 26240109 - 26240161
Alignment:
Q  20 ttgttggtggagtctaggatgagggtccaattaagtccctcaccggtggacca 72  Q
    |||| |||||| |||||| ||||||  ||||||||||||||||||||| ||||    
T  26240109 ttgtaggtggattctagggtgagggatcaattaagtccctcaccggtgaacca 26240161  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 75
Target Start/End: Complemental strand, 34026996 - 34026968
Alignment:
Q  47 caattaagtccctcaccggtggaccactt 75  Q
    |||||||||||||||||||||||||||||    
T  34026996 caattaagtccctcaccggtggaccactt 34026968  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 2138484 - 2138525
Alignment:
Q  32 tctaggatgagggtccaattaagtccctcaccggtggaccac 73  Q
    |||||| |||||||||||||| ||||||||||||||||||||    
T  2138484 tctagggtgagggtccaattaggtccctcaccggtggaccac 2138525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 10966429 - 10966380
Alignment:
Q  24 tggtggagtctaggatgagggtccaattaagtccctcaccggtggaccac 73  Q
    ||||||| |||||| ||| |||||||||| ||||||||||||||||||||    
T  10966429 tggtggattctagggtgaaggtccaattaggtccctcaccggtggaccac 10966380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 16719048 - 16718995
Alignment:
Q  19 tttgttggtggagtctaggatgagggtccaattaagtccctcaccggtggacca 72  Q
    |||||||||||| |||||| ||| ||  ||||||||||||||||||||||||||    
T  16719048 tttgttggtggattctagggtgacggatcaattaagtccctcaccggtggacca 16718995  T

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Target: scaffold0627 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 6471 - 6512
Alignment:
Q  32 tctaggatgagggtccaattaagtccctcaccggtggaccac 73  Q
    |||||| ||||||| |||||||||||||||||| ||||||||    
T  6471 tctagggtgagggttcaattaagtccctcaccgatggaccac 6512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 285185 - 285226
Alignment:
Q  32 tctaggatgagggtccaattaagtccctcaccggtggaccac 73  Q
    |||||| |||||||||||||| |||||| |||||||||||||    
T  285185 tctagggtgagggtccaattaggtcccttaccggtggaccac 285226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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