View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3895_low_6 (Length: 383)
Name: NF3895_low_6
Description: NF3895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3895_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 10 - 371
Target Start/End: Complemental strand, 7948690 - 7948329
Alignment:
| Q |
10 |
taatataaaaaccataagagagaaatcaaatttattttattttctgcaagttggatacaaaacttgaaccagcaaaaccagcagaaccaccaacaacaca |
109 |
Q |
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| T |
7948690 |
taatataaaaaccataagagagaaatcaaatttattttattttctgcaagttggatacaaaacttgaaccagcaaaaccagcagaaccaccaacaacaca |
7948591 |
T |
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| Q |
110 |
gatcaaagcaaccacagcctgcaatccaacctcgacaacattatcttcgggaacaagataaacaaacaaaggacctaaaagaagcaaaacaaagctgagt |
209 |
Q |
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| T |
7948590 |
gatcaaagcaaccacagcctgcaatccaacctcgacaacattatcttcgggaacaagataaacaaacaaaggacctaaaagaagcaaaacaaagctgagt |
7948491 |
T |
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| Q |
210 |
gtgaagagtgatcctggagttgatggatcagtagcagctgataagacaccaagttcttctgcttttgaaaggagaccaagtttctctattgttgagagag |
309 |
Q |
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| T |
7948490 |
gtgaagagtgatcctggagttgatggatcagtagcagctgataaaacaccaagttcttctgcttttgaaaggagaccaagtttctctattgttgagagag |
7948391 |
T |
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| Q |
310 |
ataatcctgctttctcggctgccgataataaacctgctttctctgccttggttaacagtctc |
371 |
Q |
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| T |
7948390 |
ataatcctgctttctcggctgccgataataaacctgctttctctgccttggttaacagtctc |
7948329 |
T |
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