View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3895_low_8 (Length: 343)
Name: NF3895_low_8
Description: NF3895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3895_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 19 - 333
Target Start/End: Original strand, 31204068 - 31204382
Alignment:
| Q |
19 |
ctgatatcaagcaagcaataggttcctcagatacatcacatagtagtttacctaagcactccttgaatggcttcgcacatctaatgttgagttcaactac |
118 |
Q |
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| T |
31204068 |
ctgatatcaagcaagcaataggttcctcagatacatcacatagtagtttacctaagcactccttgaatggcttcacacatctaatgttgagttcaactac |
31204167 |
T |
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| Q |
119 |
caaattcaagagatttgaagcagaagattcacttaaaccatctttgatacagcagaagttgaagtgaggatagtttgatgggttaagggaattaaaactt |
218 |
Q |
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| T |
31204168 |
caaattcaagagatttgaagcagaagattcacttaaaccatctttgatacaacagaagttgaagtgaggatagtttgatgggttaagggaattaaaactt |
31204267 |
T |
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| Q |
219 |
gtgtgaatgatggttatggaaaaaccatttgagtaaaggatttgtgcaagttgaagcattggatttatgtgtccttgtaatggtaaagggataagtaaca |
318 |
Q |
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| T |
31204268 |
gtgtgaatgatggttatggaaaaaccatttgagtaaaggatttgtgcaagttgaagcattggatttatgtgtccttgtaatggtaaagggataagtaaca |
31204367 |
T |
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| Q |
319 |
atctacaaccctttg |
333 |
Q |
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| T |
31204368 |
atctacaaccctttg |
31204382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 301
Target Start/End: Original strand, 30848202 - 30848234
Alignment:
| Q |
269 |
ttgaagcattggatttatgtgtccttgtaatgg |
301 |
Q |
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| T |
30848202 |
ttgaagcattggatttatgtgaccttgtaatgg |
30848234 |
T |
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