View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3896_high_1_N (Length: 379)
Name: NF3896_high_1_N
Description: NF3896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3896_high_1_N |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 21 - 358
Target Start/End: Original strand, 2786164 - 2786501
Alignment:
| Q |
21 |
acatcatcaactttaacatgaatttgatttgaaggcaagtttgttgttccggaaggactcaaggcagtgcgggcttccctgaaaccttctgatatcaaaa |
120 |
Q |
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| T |
2786164 |
acatcgtcaactttaacatgaatttgatttgaaggcaagtttgttgttccggaaggactcaaggcagtgcgggcttccctgaaaccttctgatatcaaaa |
2786263 |
T |
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| Q |
121 |
caagagggggtttcgcatcaacaggtggattgacagctccagcattgtagatggctttgattttgggaagatttcttgggcagatgacagatagagaaat |
220 |
Q |
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| T |
2786264 |
caagagggggtttagcatcaaccggtggattgacagctccagcattgtagatggctttgattttgggaagatttcttgggcagatgacagatagagaaat |
2786363 |
T |
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| Q |
221 |
agaaaactgcggaaatgctttagcaacatcttcagcatcataaaactggttacctgattccgagtcaatgcattcattcttcttgggaacatatattggt |
320 |
Q |
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| T |
2786364 |
agaaaactgcggaaatgctttagcaacatcttcagcatcataaaactggttacctgattccgagtcaatggattcattcttcttgggaacatatattggt |
2786463 |
T |
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| Q |
321 |
ctcttcaatggataagggttactggctgccacaagaat |
358 |
Q |
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| T |
2786464 |
ctcttcaatggataaggattactggctgccacaagaat |
2786501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 221
Target Start/End: Complemental strand, 22517521 - 22517462
Alignment:
| Q |
162 |
gcattgtagatggctttgattttgggaagatttcttgggcagatgacagatagagaaata |
221 |
Q |
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| T |
22517521 |
gcattgtagatggctttaattttgggaagttgttttgggcagacgaccgatagagaaata |
22517462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 22518281 - 22518232
Alignment:
| Q |
76 |
gactcaaggcagtgcgggcttccctgaaaccttctgatatcaaaacaaga |
125 |
Q |
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| T |
22518281 |
gactcaaggcactgcgggcttccctaaaaccttctgatattaaaataaga |
22518232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 271
Target Start/End: Complemental strand, 22517356 - 22517312
Alignment:
| Q |
227 |
ctgcggaaatgctttagcaacatcttcagcatcataaaactggtt |
271 |
Q |
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| T |
22517356 |
ctgcggaaacgctttagcaacagcttcagcatcatataactggtt |
22517312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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