View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3896_low_1 (Length: 294)
Name: NF3896_low_1
Description: NF3896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3896_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 15 - 284
Target Start/End: Original strand, 11343862 - 11344133
Alignment:
| Q |
15 |
atcagtccccatgattgattttagacttttgtgatatccttgtcatttaatctgctttacaatagactatttggctcaaaatagttgttgctgcttgatg |
114 |
Q |
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| T |
11343862 |
atcagtccccatgattgattttagacttttgtgatatccttgtcatttaatctgctttacaatagactatttggctcgaaatagttgttgctgcttgatg |
11343961 |
T |
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| Q |
115 |
ctcttagttgaaggaagttgaagatgcgcatatcgttttccatctttacggtaggttcattacctattctttaaacctcaggttggtgctcgcaaat--- |
211 |
Q |
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| T |
11343962 |
atgttagttgaagggagttgaagatgcgtgtatcgttttccatctttacggtaggttcattacctattctttagacctcaggttggtgctcgcaaatgtt |
11344061 |
T |
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| Q |
212 |
-atacatcatattttttacagcctggttttgcgttcgtatcctgttttgtgttatgttgtgcttgtgattgatg |
284 |
Q |
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| T |
11344062 |
catacatcatattttttacagcctggttttgcgttcgtatcctggtt--tgttatgttgtgcttgtgattgatg |
11344133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 15 - 284
Target Start/End: Original strand, 11501882 - 11502153
Alignment:
| Q |
15 |
atcagtccccatgattgattttagacttttgtgatatccttgtcatttaatctgctttacaatagactatttggctcaaaatagttgttgctgcttgatg |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
11501882 |
atcagtccccatgattgattttagacttttgtgatatccttgtcatttaatctgctttacaatagactatttggctcgaaatagttgttgctgcttgatg |
11501981 |
T |
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| Q |
115 |
ctcttagttgaaggaagttgaagatgcgcatatcgttttccatctttacggtaggttcattacctattctttaaacctcaggttggtgctcgcaaat--- |
211 |
Q |
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| T |
11501982 |
atgttagttgaagggagttgaagatgcgtgtatcgttttccatctttacggtaggttcattacctattctttagacctcaggttggtgctcgcaaatgtt |
11502081 |
T |
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| Q |
212 |
-atacatcatattttttacagcctggttttgcgttcgtatcctgttttgtgttatgttgtgcttgtgattgatg |
284 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
11502082 |
catacatcatattttttacagcctggttttgcgttcgtatcctggtt--tgttatgttgtgcttgtgattgatg |
11502153 |
T |
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