View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3897_high_1 (Length: 921)
Name: NF3897_high_1
Description: NF3897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3897_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 560 - 904
Target Start/End: Complemental strand, 40382497 - 40382153
Alignment:
| Q |
560 |
aaagacgatagttactaaaggatcaaactccttgtatcaaaagtctttatgacaataatcgttcgatagtctatttcattgatgttgtggtaacgacaat |
659 |
Q |
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| T |
40382497 |
aaagacgatagttactaaaggatcaaactccttgtatcgaaagtctttctgacaataatcgttcgatggtctatttcattgatgttgtggcaatggcaat |
40382398 |
T |
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| Q |
660 |
gcaaatgaaatgaaaaagcttccatttgataggaagattgttgtgtaacaagcgagtcagaaactccatattagatgaataactgaatattaaggaatat |
759 |
Q |
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| T |
40382397 |
gcaaatggaatgaaaaagcttccacttgataggaagattgttgtgtaacaagcgagtcagaaactccatattaaatggataactgaatattgaaaaatat |
40382298 |
T |
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| Q |
760 |
ataagttagaggacgcatatacataataccttgagattttaaattaaaatcggtgtccaacttgctcttgatccaatgtgatgttccactagggctctcc |
859 |
Q |
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| T |
40382297 |
ataagttagaggactaatatacataataccttaagattttaaattaagattggtgtccaacttgctcttgatccaatgtgatgttccactagggctctcc |
40382198 |
T |
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| Q |
860 |
tcttgacatttaatagatgcgctttttgagatggatgtcaagttt |
904 |
Q |
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| T |
40382197 |
tcttgacatttaatagatgcgctttttgagatggatatcaagttt |
40382153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 174; E-Value: 4e-93
Query Start/End: Original strand, 346 - 563
Target Start/End: Complemental strand, 40382784 - 40382567
Alignment:
| Q |
346 |
catttaagtaggtgtgactaaaccttttttatttatatttgtgttcaagtaaaatttggtcaatttaagttattttaaaagattgtagatatatcactac |
445 |
Q |
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| T |
40382784 |
catttaagtggatgtggctaaaccttttttatttatatttgtgttcaagcaaaatttggtcaatttaagttattttaaaagattgtagatatatcactac |
40382685 |
T |
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| Q |
446 |
tgaaaaaagattgtagatatatataggcagaatgataaaaattaatgaaatcttaaagataaggtttgaatcaaatcacaatgttatgtgtaaccatttc |
545 |
Q |
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| T |
40382684 |
tgcaaaaagattttagatatatataagcaaaatgataaaaattaatgaaatcttgaaaataaggtttgaatcaaatcacaatgttatgtgtaaccatttc |
40382585 |
T |
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| Q |
546 |
aatatttttatgttaaag |
563 |
Q |
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| T |
40382584 |
aatatttttatcttaaag |
40382567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 167; E-Value: 6e-89
Query Start/End: Original strand, 20 - 212
Target Start/End: Complemental strand, 40383104 - 40382915
Alignment:
| Q |
20 |
acagaataataaaagagacaaagacaccaacgtaggtgatgtcaaatcaaatgttttatcagcgttgtcgtcgtgccggtagtaattatgtcgatctcat |
119 |
Q |
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| T |
40383104 |
acagaataataaaagagacaaagacaccaacgtaggtgatgtcaaatcaaatgttttatcagcgttgtcgt---gccggtagtaattatgtcgatctaat |
40383008 |
T |
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| Q |
120 |
ttttacatttcacctcaagccacggttcaccttcggttgttaactgggcccataccacgcacgtggcaccctaggacaaacagcttagataag |
212 |
Q |
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| T |
40383007 |
ttttacatttcacctcaagccacggttcaccttcggttgttaactgggcccataccacgcacgtggcaccctagtacaaacaacttagataag |
40382915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 357 - 394
Target Start/End: Original strand, 37413323 - 37413360
Alignment:
| Q |
357 |
gtgtgactaaaccttttttatttatatttgtgttcaag |
394 |
Q |
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| T |
37413323 |
gtgtgcctaaaccttttttatttgtatttgtgttcaag |
37413360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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