View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3897_high_2 (Length: 531)

Name: NF3897_high_2
Description: NF3897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3897_high_2
NF3897_high_2
[»] chr4 (7 HSPs)
chr4 (274-516)||(4908321-4908563)
chr4 (1-212)||(4908113-4908324)
chr4 (358-489)||(4902559-4902688)
chr4 (359-450)||(4916347-4916434)
chr4 (389-470)||(4896572-4896647)
chr4 (420-505)||(4938075-4938161)
chr4 (454-498)||(4984800-4984844)
[»] chr6 (3 HSPs)
chr6 (388-516)||(22009481-22009609)
chr6 (359-501)||(22055396-22055544)
chr6 (359-501)||(22020899-22021050)
[»] chr2 (3 HSPs)
chr2 (388-516)||(44309763-44309891)
chr2 (359-501)||(44365781-44365929)
chr2 (359-501)||(44331007-44331158)


Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 274 - 516
Target Start/End: Original strand, 4908321 - 4908563
Alignment:
Q  274 tccaacgaatattgtacacaactaaatccttaccactactacacgaaagattatccaaataaaattgtacacgaaaaatatttcaaaaaactatttgttc 373  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  4908321 tccaacgaatattgtacacaactaaattcttaccactactacacgaaagattctccaaataaaattgtacacgaaaaatatttcaaaaaactatttgttc 4908420  T
Q  374 tcaataatgattgctttatataatgctgaaacttaccacttctcttctcttgtactcactttgaacctcaacaacaacttgttcactaaattccctttga 473  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4908421 tcaataatgattgctttatataatgctgaaacttaccacttctcttctcttgtactcactttgaacctcaataacaacttgttcactaaattccctttga 4908520  T
Q  474 gaattgttcttccaaacaatgagtgcttctcatagtgaataat 516  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  4908521 gaattgttcttccaaacaatgagtgcttctcatagtgaataat 4908563  T

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Target: chr4; HSP #2
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 4908113 - 4908324
Alignment:
Q  1 cttagtataacatttcaaaagaaagactcttaattagacaatgttcttaaaacacaacttagtataacatcttattgttacatatagtaaataatatcag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4908113 cttagtataacatttcaaaagaaagactcttaattagacaatgttcttaaaacacaacttagtataacattttattgttacatatagtaaataatatcag 4908212  T
Q  101 aaaattaaagtatccacaagggtattannnnnnngaagaagccgaatggtataagttatttaaaccaacaattcaatcgtaacgaacacaggatatgcaa 200  Q
    |||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4908213 aaaattaaagtatccacaagggtattatttttttgaagaagccgaatggtataagttatttaaaccaacaattcaatcgtaacgaacacagggtatgcaa 4908312  T
Q  201 gaagtgtatcca 212  Q
    ||||||||||||    
T  4908313 gaagtgtatcca 4908324  T

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Target: chr4; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 358 - 489
Target Start/End: Original strand, 4902559 - 4902688
Alignment:
Q  358 aaaaaactatttgttctcaataatgattgctttatataatgctgaaacttaccacttctcttctcttgtactcactttgaacct---caacaacaacttg 454  Q
    |||||||||||||||||||||||||| | |||||||||||| ||||||||||||     || ||||||||||||||||||||||   |||||||||||||    
T  4902559 aaaaaactatttgttctcaataatgacttctttatataatgttgaaacttacca-----ctactcttgtactcactttgaacctcaacaacaacaacttg 4902653  T
Q  455 ttcactaaattccctttgagaattgttcttccaaa 489  Q
    |||| ||||||||||| || ||||| |||||||||    
T  4902654 ttcaataaattcccttcgaaaattgctcttccaaa 4902688  T

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Target: chr4; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 359 - 450
Target Start/End: Original strand, 4916347 - 4916434
Alignment:
Q  359 aaaaactatttgttctcaataatgattgctttatataat-gctgaaacttaccacttctcttctcttgtactcactttgaacctcaacaacaa 450  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||     || || |||||| ||||||||||||||||||||||||    
T  4916347 aaaaactatttgttctcaataatgattgctttatataatggctgaaactta-----tcactactcttgcactcactttgaacctcaacaacaa 4916434  T

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Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 389 - 470
Target Start/End: Original strand, 4896572 - 4896647
Alignment:
Q  389 ttatataatgctgaaacttaccacttctcttctcttgtactcactttgaacctcaacaacaacttgttcactaaattccctt 470  Q
    |||||||||||||||||||||||     || |||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  4896572 ttatataatgctgaaacttacca-----ctactcttgtactcactttgaaccttaacaacaa-ttgttcactaaattccctt 4896647  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 420 - 505
Target Start/End: Original strand, 4938075 - 4938161
Alignment:
Q  420 ctcttgtactcactttgaacctcaacaacaacttgttcac--taaattccctttgagaattgttcttccaaacaatgagtgcttctca 505  Q
    ||||||| |||||||||||||||||||||||  | ||| |  |||||| |||| ||||||||||||| | ||||||||||||||||||    
T  4938075 ctcttgtcctcactttgaacctcaacaacaaactcttcgctataaatttccttcgagaattgttctt-ctaacaatgagtgcttctca 4938161  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 454 - 498
Target Start/End: Original strand, 4984800 - 4984844
Alignment:
Q  454 gttcactaaattccctttgagaattgttcttccaaacaatgagtg 498  Q
    |||||||||| ||||||| |||| |||||||||||||||| ||||    
T  4984800 gttcactaaactccctttaagaaatgttcttccaaacaataagtg 4984844  T

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Target: chr6 (Bit Score: 58; Significance: 4e-24; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 388 - 516
Target Start/End: Original strand, 22009481 - 22009609
Alignment:
Q  388 tttatataatg-ctgaaacttaccacttctcttctcttgtactcactttgaacctcaacaacaacttgttcactaaattccctttgagaattgttcttcc 486  Q
    ||||||||||| ||||||||||||||| |||  ||||||||||||  ||||| |||||||||||  | ||||||||||||||||||||  ||||||||||    
T  22009481 tttatataatggctgaaacttaccactcctcacctcttgtactcatattgaatctcaacaacaaactcttcactaaattccctttgagtgttgttcttcc 22009580  T
Q  487 aaacaatgagtgcttctcatagtgaataat 516  Q
     ||||| ||||||||||||||  |||||||    
T  22009581 -aacaacgagtgcttctcataaagaataat 22009609  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 359 - 501
Target Start/End: Original strand, 22055396 - 22055544
Alignment:
Q  359 aaaaactatttgttctcaataatgat------tgctttatataatg-ctgaaacttaccacttctcttctcttgtactcactttgaacctcaacaacaac 451  Q
    ||||||||||||||||||||| ||||      |||||||||||||| ||||||||||||||| |||  ||||||||||||| ||||| |||||||||||     
T  22055396 aaaaactatttgttctcaatattgatattgattgctttatataatggctgaaacttaccactcctcacctcttgtactcacattgaatctcaacaacaaa 22055495  T
Q  452 ttgttcactaaattccctttgagaattgttcttccaaacaatgagtgctt 501  Q
     | ||||||||| |||||||  |  |||||||||| ||||| ||||||||    
T  22055496 ctcttcactaaactccctttttgtgttgttcttcc-aacaacgagtgctt 22055544  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 359 - 501
Target Start/End: Original strand, 22020899 - 22021050
Alignment:
Q  359 aaaaactatttgttctcaataatgat------tgctttatataatg-ctgaaacttaccacttctcttctcttgtactcactttgaacctcaacaacaa- 450  Q
    ||||||||||||||||||||| ||||      |||||||||||||| | ||||||||||||| |||  ||||||||||||| ||||| |||||||||||     
T  22020899 aaaaactatttgttctcaatattgatattgattgctttatataatggcagaaacttaccactcctcacctcttgtactcacattgaatctcaacaacaaa 22020998  T
Q  451 --cttgttcactaaattccctttgagaattgttcttccaaacaatgagtgctt 501  Q
      ||| ||||||||| |||||||  |  |||||||||| ||||| ||||||||    
T  22020999 ctcttcttcactaaactccctttttgtgttgttcttcc-aacaacgagtgctt 22021050  T

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Target: chr2 (Bit Score: 58; Significance: 4e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 388 - 516
Target Start/End: Original strand, 44309763 - 44309891
Alignment:
Q  388 tttatataatg-ctgaaacttaccacttctcttctcttgtactcactttgaacctcaacaacaacttgttcactaaattccctttgagaattgttcttcc 486  Q
    ||||||||||| ||||||||||||||| |||  ||||||||||||  ||||| |||||||||||  | ||||||||||||||||||||  ||||||||||    
T  44309763 tttatataatggctgaaacttaccactcctcacctcttgtactcatattgaatctcaacaacaaactcttcactaaattccctttgagtgttgttcttcc 44309862  T
Q  487 aaacaatgagtgcttctcatagtgaataat 516  Q
     ||||| ||||||||||||||  |||||||    
T  44309863 -aacaacgagtgcttctcataaagaataat 44309891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 359 - 501
Target Start/End: Original strand, 44365781 - 44365929
Alignment:
Q  359 aaaaactatttgttctcaataatgat------tgctttatataatg-ctgaaacttaccacttctcttctcttgtactcactttgaacctcaacaacaac 451  Q
    ||||||||||||||||||||| ||||      |||||||||||||| ||||||||||||||| |||  ||||||||||||| ||||| |||||||||||     
T  44365781 aaaaactatttgttctcaatattgatattgattgctttatataatggctgaaacttaccactcctcacctcttgtactcacattgaatctcaacaacaaa 44365880  T
Q  452 ttgttcactaaattccctttgagaattgttcttccaaacaatgagtgctt 501  Q
     | ||||||||| |||||||  |  |||||||||| ||||| ||||||||    
T  44365881 ctcttcactaaactccctttttgtgttgttcttcc-aacaacgagtgctt 44365929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 359 - 501
Target Start/End: Original strand, 44331007 - 44331158
Alignment:
Q  359 aaaaactatttgttctcaataatgat------tgctttatataatg-ctgaaacttaccacttctcttctcttgtactcactttgaacctcaacaacaa- 450  Q
    ||||||||||||||||||||| ||||      |||||||||||||| | ||||||||||||| |||  ||||||||||||| ||||| |||||||||||     
T  44331007 aaaaactatttgttctcaatattgatattgattgctttatataatggcagaaacttaccactcctcacctcttgtactcacattgaatctcaacaacaaa 44331106  T
Q  451 --cttgttcactaaattccctttgagaattgttcttccaaacaatgagtgctt 501  Q
      ||| ||||||||| |||||||  |  |||||||||| ||||| ||||||||    
T  44331107 ctcttcttcactaaactccctttttgtgttgttcttcc-aacaacgagtgctt 44331158  T

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