View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3897_low_3 (Length: 358)
Name: NF3897_low_3
Description: NF3897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3897_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 6e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 3283505 - 3283699
Alignment:
| Q |
1 |
aagaaataataatgttcgcctctagaaagcacataaaaagtaagagatattactgtcatagaaaatctctgatttttgcctaataattactattttgatc |
100 |
Q |
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| T |
3283505 |
aagaaataataatgttcgcctctagaaagcacataaaaagtaagagataatactgtcatagaaaatctctgatttttgcttaataattactattttgatc |
3283604 |
T |
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| Q |
101 |
aatatacatcaatttatggttctaggttcgattccttgaacctaatttctagaaatgcaggcaaacagacacgatgggagttgacctaaatattg |
195 |
Q |
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| T |
3283605 |
aatatacatcaatttatggttctaggttcgattccttgaacctaatttctagaaatgcaggcaaacagacacgatgggagttgacccaaatattg |
3283699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 192 - 339
Target Start/End: Original strand, 3283735 - 3283882
Alignment:
| Q |
192 |
attgtacgagatttagtataagaaaaaacaaattgggtaatgatcatgtgtggctatagccacacacagccctatggtgaatctgtccctgattagaaac |
291 |
Q |
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| T |
3283735 |
attgtacgagatttagtataagaaaaaacaaattgggtaatgatcatgtgtggctatagccacacacagccctatggtgaatctgtccctgattagaaac |
3283834 |
T |
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| Q |
292 |
aaacacaagttttctttaaagtttgaacaacgaaaaagttgcccattg |
339 |
Q |
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| T |
3283835 |
aaacacaagttttctttaaagtttgaacaacgaaaaagttgcccattg |
3283882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 18633945 - 18633987
Alignment:
| Q |
54 |
tgtcatagaaaatctctgatttttgcctaataattactatttt |
96 |
Q |
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| T |
18633945 |
tgtcatagaaaaactctgatttttgcctaataattactatttt |
18633987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 1175548 - 1175640
Alignment:
| Q |
1 |
aagaaataataatgttcgcctctagaaagcacataaaaagtaagagatattactgtcatagaaaatctctgatttttgcctaataattactatttt |
96 |
Q |
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| T |
1175548 |
aagaaataataatgtttgtctctacaaa--acagaaaaattaagagacaata-tgtcatagaaaaactctgaattttgcctaatacttactatttt |
1175640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 148
Target Start/End: Original strand, 4701258 - 4701303
Alignment:
| Q |
103 |
tatacatcaatttatggttctaggttcgattccttgaacctaattt |
148 |
Q |
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| T |
4701258 |
tatacatcaagttatggttctaggtttgattccttaaacttaattt |
4701303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 1175744 - 1175780
Alignment:
| Q |
103 |
tatacatcaatttatggttctaggttcgattccttga |
139 |
Q |
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| T |
1175744 |
tatacatcaatttatagttctaggttcgattacttga |
1175780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 12594322 - 12594362
Alignment:
| Q |
224 |
ttgggtaatgatcatgtgtggctatagccacacacagccct |
264 |
Q |
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|||| |||| |||||||||||||||||||||||| |||||| |
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| T |
12594322 |
ttggataataatcatgtgtggctatagccacacatagccct |
12594362 |
T |
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