View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3897_low_8 (Length: 250)
Name: NF3897_low_8
Description: NF3897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3897_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 45985930 - 45986148
Alignment:
| Q |
19 |
gtcttgtctattctattggagaaaatacaaattttcttccaagtttctatgtacacctaggcagtatgggaacaaagaactctagttctgtaaccataag |
118 |
Q |
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| T |
45985930 |
gtcttgtctattctat-ggagaaaatacaaattttcttccaagtttctatgtacacctaggaagtatgggaacaaagaactctagttctgtaaccataag |
45986028 |
T |
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| Q |
119 |
atggctgaagctaattctggatcgtctcctaagaagttaacacccaatgatcccctcccaaatccacaaccaggataacttacttatcccaataactata |
218 |
Q |
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|||| |||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45986029 |
atggttgaagccaattctggatcatctcctaagaagttaacacccgatgatcccctcccaaatccacaaccaggataacttacttatcccaataactata |
45986128 |
T |
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| Q |
219 |
acacatttggcatcaattca |
238 |
Q |
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|||||||||||||||||||| |
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| T |
45986129 |
acacatttggcatcaattca |
45986148 |
T |
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