View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3898_high_16 (Length: 239)
Name: NF3898_high_16
Description: NF3898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3898_high_16 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 49622279 - 49622059
Alignment:
| Q |
18 |
aagaactttgttcatgaaagcattgaaaaacatctttaatcatgaggattttgtaatgtcacataggtccctaaatgccatcaaaactaaactaggtcag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49622279 |
aagaactttgttcatgaaagcattgaaaaacatctttaatcatgaggattttgtaatgtcacataggtccctaaatgccatcaaaactaaactaggtcag |
49622180 |
T |
|
| Q |
118 |
attgaaaatcctatactgtggcagtcaaggttagcaaaaataagaggactttatatccaattccatgcactaaaaatatgggatacactttcaaaagctt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49622179 |
attgaaaatcctatactgtggcagtcaaggttagcaaaaataagaggactttatatccaattccatgcactaaaaatatgggatacactttcaaaagctt |
49622080 |
T |
|
| Q |
218 |
tattttccctttgcttctcct |
238 |
Q |
| |
|
|||||||||||| ||| |||| |
|
|
| T |
49622079 |
tattttcccttttcttttcct |
49622059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University