View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3898_high_2 (Length: 577)

Name: NF3898_high_2
Description: NF3898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3898_high_2
NF3898_high_2
[»] chr8 (6 HSPs)
chr8 (17-490)||(34532721-34533201)
chr8 (498-567)||(34532595-34532664)
chr8 (332-439)||(34542134-34542239)
chr8 (17-119)||(38451970-38452069)
chr8 (78-119)||(39851664-39851705)
chr8 (275-307)||(34542256-34542288)
[»] chr6 (1 HSPs)
chr6 (73-163)||(14903463-14903553)
[»] chr5 (2 HSPs)
chr5 (75-301)||(2999630-2999862)
chr5 (195-307)||(7432475-7432587)
[»] chr4 (1 HSPs)
chr4 (19-120)||(44476117-44476215)
[»] chr2 (2 HSPs)
chr2 (73-155)||(32718542-32718624)
chr2 (73-155)||(32724947-32725029)


Alignment Details
Target: chr8 (Bit Score: 386; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 17 - 490
Target Start/End: Complemental strand, 34533201 - 34532721
Alignment:
Q  17 agttagctggttgtgtgattgttgattgttaatgtttactgccatactcatcatcgttgagtggtattcttgtt------gcaatttttcttttgtgcat 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||    
T  34533201 agttagctggttgtgtgattgttgattgttaatgtttactgccatactcatcatcgttgagtggtattcttgttcttgttgcaatttttcttttgtgcat 34533102  T
Q  111 tagatccttatttagtctactcaaggagctagcttgatacaatttatagcttctttatattacatggttaaaccattgaatacgcttttgaccaattacg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34533101 tagatccttatttagtctactcaaggagctagcttgatacaatttatagcttctttatattacatggttaaaccattgaatacgcttttgaccaattacg 34533002  T
Q  211 tcaacattaacagtatcaaaactgattgatttcactttcttctcaggtttcactgtcgtaaaactgagaattttggctaagttaagagaaacgcccaggt 310  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  34533001 tcaacattaacggtatcaaaactgattgatttcactttcttctcaggtttcactgtcgtaaaactgagaattttggctcagttaagagaaacgcccaggt 34532902  T
Q  311 -nnnnnnnnnnnnnnnntcaacagttatgaactcataagacttatttatcaaataaacgatccactactcattcagtgctaccggtatgctagattggat 409  Q
                     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  34532901 aaaaaaaaataaaaaaatcaacagttatgaactcataagacttatttatcaaataaacgatccactactcattcagtcctaccggtatgctagattggat 34532802  T
Q  410 ggatcataatctgttcctcatccatcatactgggatttgggaggctttagaaattaacacacgctggaatctataaatttt 490  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  34532801 ggatcataatctgttcctcatccatcatactgggatttgggaggctttagaaattaacacacgccggaatctataaatttt 34532721  T

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Target: chr8; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 498 - 567
Target Start/End: Complemental strand, 34532664 - 34532595
Alignment:
Q  498 gctgagaagagactttctcctaaattatgtcatatgcttccgccatcattaatactacagatgatgtcca 567  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  34532664 gctgagaagagactttctcctaaattatgtcatatgcttccgccatcattaatactacagttgatgtcca 34532595  T

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Target: chr8; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 332 - 439
Target Start/End: Complemental strand, 34542239 - 34542134
Alignment:
Q  332 agttatgaactcataagacttatttatcaaataaacgatccactactcattcagtgctaccggtatgctagattggatggatcataatctgttcctcatc 431  Q
    |||||||||||| |||| |||||||||||||||||  ||||| |||||||| || ||| ||||||||||||||||||  ||||||||| | |||||||||    
T  34542239 agttatgaactcctaaggcttatttatcaaataaataatccattactcatt-agagctcccggtatgctagattgga-cgatcataatatcttcctcatc 34542142  T
Q  432 catcatac 439  Q
    ||||||||    
T  34542141 catcatac 34542134  T

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Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 38452069 - 38451970
Alignment:
Q  17 agttagctggttgtgtgattgttgattgttaatgtttactgccatactcatcatcgttgagtggtattcttgttgcaatttttcttttgtgcattagatc 116  Q
    |||||| |||||||||||||||||||| ||||||  | |||||||| ||||||| |||   |||| |||||||||||| ||||| |||||||| ||||||    
T  38452069 agttagttggttgtgtgattgttgatttttaatgcctgctgccatattcatcattgtt---tggttttcttgttgcaagttttcctttgtgcactagatc 38451973  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 119
Target Start/End: Original strand, 39851664 - 39851705
Alignment:
Q  78 tggtattcttgttgcaatttttcttttgtgcattagatcctt 119  Q
    ||||||||||||||||| ||||| ||||||||| ||||||||    
T  39851664 tggtattcttgttgcaagttttcctttgtgcatgagatcctt 39851705  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 275 - 307
Target Start/End: Complemental strand, 34542288 - 34542256
Alignment:
Q  275 tgagaattttggctaagttaagagaaacgccca 307  Q
    |||||||||||||| ||||||||||||||||||    
T  34542288 tgagaattttggctcagttaagagaaacgccca 34542256  T

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Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 73 - 163
Target Start/End: Complemental strand, 14903553 - 14903463
Alignment:
Q  73 ttgagtggtattcttgttgcaatttttcttttgtgcattagatccttatttagtctactcaaggagctagcttgatacaatttatagcttc 163  Q
    |||||||||||||||||||||||||| | ||||||||| ||||| ||||||| |  |||||  ||||||||||||| |||||| |||||||    
T  14903553 ttgagtggtattcttgttgcaattttacctttgtgcatgagatcattatttatttaactcagagagctagcttgatgcaatttctagcttc 14903463  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 75 - 301
Target Start/End: Original strand, 2999630 - 2999862
Alignment:
Q  75 gagtggtattcttgttgcaatttttcttttgtgcattagatcctta------tttagtctactcaaggagctagcttgatacaatttatagcttctttat 168  Q
    |||||||||||||||||||||||||| ||||||||| ||||| |||      |||| |  |||||  ||||||||||||| |||||| |||||||         
T  2999630 gagtggtattcttgttgcaatttttcctttgtgcatgagatcattattttattttatttaactcagagagctagcttgatgcaatttctagcttc----- 2999724  T
Q  169 attacatggttaaaccattgaatac-----gcttttgaccaattacgtcaacattaacagtatcaaaactgattgatttcactttcttctcaggtttcac 263  Q
    |||||||  ||||| ||||||||||      ||||||| |||| |  ||||||||||||  | ||||  ||||||||||  |||||||||||  | ||||    
T  2999725 attacatatttaaatcattgaataccttcaccttttgagcaatcatatcaacattaacatcaacaaagttgattgattttgctttcttctcaattctcac 2999824  T
Q  264 tgtcgtaaaactgagaattttggctaagttaagagaaa 301  Q
    | || ||||| |||||||||||||| | ||||||||||    
T  2999825 tatcataaaattgagaattttggctcatttaagagaaa 2999862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 195 - 307
Target Start/End: Original strand, 7432475 - 7432587
Alignment:
Q  195 cttttgaccaattacgtcaacattaacagtatcaaaactgattgatttcactttcttctcaggtttcactgtcgtaaaactgagaattttggctaagtta 294  Q
    ||||||| |||| | |||||||||||||  |  |||  ||||||||||  |||||||||| | | ||||  || ||||||| |||||||||||| | |||    
T  7432475 cttttgagcaataatgtcaacattaacatcaagaaagttgattgatttagctttcttctcggttctcaccatcataaaactaagaattttggctcattta 7432574  T
Q  295 agagaaacgccca 307  Q
    | |||||||||||    
T  7432575 atagaaacgccca 7432587  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 44476117 - 44476215
Alignment:
Q  19 ttagctggttgtgtgattgttgattgttaatgtttactgccatactcatcatcgttgagtggtattcttgttgcaatttttcttttgtgcattagatcct 118  Q
    |||| ||||||| | |||||||||| |||||| || || ||| | |||||||   ||||| ||||||||||||||| ||||| ||||||||| |||||||    
T  44476117 ttagttggttgtatcattgttgatttttaatgcttgctaccaaattcatcat---tgagttgtattcttgttgcaagttttcctttgtgcatgagatcct 44476213  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 73 - 155
Target Start/End: Original strand, 32718542 - 32718624
Alignment:
Q  73 ttgagtggtattcttgttgcaatttttcttttgtgcattagatccttatttagtctactcaaggagctagcttgatacaattt 155  Q
    |||||||||||| | ||||||| ||||| || |||||| ||||| |||||||||  |||||  ||||| ||||||| ||||||    
T  32718542 ttgagtggtattgtagttgcaacttttccttagtgcatgagatcgttatttagtgaactcagagagctggcttgatgcaattt 32718624  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 73 - 155
Target Start/End: Original strand, 32724947 - 32725029
Alignment:
Q  73 ttgagtggtattcttgttgcaatttttcttttgtgcattagatccttatttagtctactcaaggagctagcttgatacaattt 155  Q
    |||||||||||| | ||||||| ||||| || |||||| ||||| |||||||||  |||||  ||||| ||||||| ||||||    
T  32724947 ttgagtggtattgtagttgcaacttttccttagtgcatgagatcgttatttagtgaactcagagagctggcttgatgcaattt 32725029  T

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