View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3898_high_4 (Length: 493)

Name: NF3898_high_4
Description: NF3898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3898_high_4
NF3898_high_4
[»] scaffold0902 (3 HSPs)
scaffold0902 (5-348)||(3568-3899)
scaffold0902 (290-354)||(17-83)
scaffold0902 (7-62)||(3477-3532)
[»] scaffold1652 (3 HSPs)
scaffold1652 (5-245)||(1-241)
scaffold1652 (5-74)||(253-322)
scaffold1652 (7-69)||(336-398)
[»] scaffold0002 (2 HSPs)
scaffold0002 (5-333)||(164951-165262)
scaffold0002 (7-74)||(165271-165338)
[»] chr6 (7 HSPs)
chr6 (66-333)||(14248513-14248775)
chr6 (5-144)||(14317026-14317165)
chr6 (167-258)||(14317161-14317252)
chr6 (5-88)||(14351653-14351736)
chr6 (7-74)||(14248388-14248455)
chr6 (5-62)||(14248464-14248521)
chr6 (7-69)||(14316950-14317012)
[»] scaffold1176 (2 HSPs)
scaffold1176 (142-256)||(1206-1320)
scaffold1176 (7-74)||(112-179)
[»] chr4 (4 HSPs)
chr4 (125-317)||(37245288-37245478)
chr4 (11-76)||(37245129-37245194)
chr4 (113-170)||(37237814-37237871)
chr4 (10-69)||(37241922-37241981)


Alignment Details
Target: scaffold0902 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 5 - 348
Target Start/End: Original strand, 3568 - 3899
Alignment:
Q  5 gtaggcgatggtgcttgagatggaggagtagagattgacgatggggcgacagcaggagcagcagcgggagaaccagatgaagcagtcggtgaagaagagg 104  Q
    ||||||||||||||||||| ||||||  ||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  3568 gtaggcgatggtgcttgagttggagggatagagatcgacgatggagtgacagcaggagcagcagcgggagaaccagatgaagcagttggtgaagaagagg 3667  T
Q  105 gagcactattcacagctaccggaggagacgccactggtgagtcagcggagggagaaatagcaggtgatggaaacggagaagacttaggggatgatggcgg 204  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||             
T  3668 gagcactattcagaggtaccggaggagacgccactggtgagtcagcggagggagaaatagcaggtgatggaaacggagaagacttggggga--------- 3758  T
Q  205 tgatcgagcaacagcggaactcagaaacagtgcaaccaaaagcatcaacacagcggtgtgatatgagaagaagccatagttgaaagatgaaggagaatgg 304  Q
    ||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||    | || |||||||||||||| ||||||||||||||||| |    
T  3759 tgatctagcaacggcggaactcagcaacagtgcaaccaaaagcatcaacacagcggt----tttg-gaagaagccatagtagaaagatgaaggagaatag 3853  T
Q  305 gaaaattagggttaac--tagaaagttttgaagcagtgatattgtt 348  Q
    ||||||||||||||||  || ||||||||| |||||||||||||||    
T  3854 gaaaattagggttaactatataaagttttgtagcagtgatattgtt 3899  T

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Target: scaffold0902; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 290 - 354
Target Start/End: Original strand, 17 - 83
Alignment:
Q  290 gatgaaggagaatgggaaaattagggttaac--tagaaagttttgaagcagtgatattgttgtgttg 354  Q
    ||||| |||||||||||| ||||||||||||  || |||||||||||||| ||||||| ||||||||    
T  17 gatgatggagaatgggaatattagggttaacaatataaagttttgaagcaatgatattattgtgttg 83  T

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Target: scaffold0902; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 3477 - 3532
Alignment:
Q  7 aggcgatggtgcttgagatggaggagtagagattgacgatggggcgacagcaggag 62  Q
    ||||| ||||||||||||||||||||||||||| |||||||| |  ||||||||||    
T  3477 aggcgttggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggag 3532  T

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Target: scaffold1652 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: scaffold1652
Description:

Target: scaffold1652; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 5 - 245
Target Start/End: Complemental strand, 241 - 1
Alignment:
Q  5 gtaggcgatggtgcttgagatggaggagtagagattgacgatggggcgacagcaggagcagcagcgggagaaccagatgaagcagtcggtgaagaagagg 104  Q
    |||||||||||| |||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  241 gtaggcgatggtacttgagatggaggagtagagatcgacgatggagagacagcaggagcagcagcgggagaaccagatgaagcagtcgttaaagaagagg 142  T
Q  105 gagcactattcacagctaccggaggagacgccactggtgagtcagcggagggagaaatagcaggtgatggaaacggagaagacttaggggatgatggcgg 204  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||    
T  141 gagcactattcacagttaccggaggagacgccactggtgagtcagcggagggagaaatagcaggtgatggaaacggagaagacttgggtgatgatggtgg 42  T
Q  205 tgatcgagcaacagcggaactcagaaacagtgcaaccaaaa 245  Q
    ||||| |||||| ||||||||||||||||||||||||||||    
T  41 tgatctagcaacggcggaactcagaaacagtgcaaccaaaa 1  T

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Target: scaffold1652; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 322 - 253
Alignment:
Q  5 gtaggcgatggtgcttgagatggaggagtagagattgacgatggggcgacagcaggagcagcagcgggag 74  Q
    |||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||| |||||| ||||    
T  322 gtaggcgatggtgcttgagatggaggggtagagatcgacgatggagcgacagcaggagaagcagcaggag 253  T

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Target: scaffold1652; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 398 - 336
Alignment:
Q  7 aggcgatggtgcttgagatggaggagtagagattgacgatggggcgacagcaggagcagcagc 69  Q
    |||| ||||||||||||||||||||||||| || |||||||| |  ||||||||||| |||||    
T  398 aggctatggtgcttgagatggaggagtagatatcgacgatggagtcacagcaggagcggcagc 336  T

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Target: scaffold0002 (Bit Score: 180; Significance: 5e-97; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 5 - 333
Target Start/End: Complemental strand, 165262 - 164951
Alignment:
Q  5 gtaggcgatggtgcttgagatggaggagtagagattgacgatggggcgacagcaggagcagcagcgggagaaccagatgaagcagtcggtgaagaagagg 104  Q
    |||||||||||| ||||||||||||| ||||||||  | ||||| |||||||||            |||||||||||  |||||| |||||||| |||||    
T  165262 gtaggcgatggtccttgagatggaggggtagagatccaggatggagcgacagca------------ggagaaccagagaaagcagacggtgaaggagagg 165175  T
Q  105 gagcactattcacagctaccggaggagacgccactggtgagtcagcggagggagaaatagcaggtgatggaaacggagaagacttaggggatgatggcgg 204  Q
    |||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||    
T  165174 gagcactattcagaggtaccggagaagacgccactggtgagtcagcggagggagaaatagcaggtgatggaaacggagaagactggggggatgatggtgg 165075  T
Q  205 tgatcgagcaacagcggaactcagaaacagtgcaaccaaaagcatcaacacagcggtgtgatatgagaagaagccatagttgaaagatgaaggagaatgg 304  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |     ||||||||||||||||| |||||||||| ||||||||    
T  165074 tgatcgagcaacagcggaactcagaaacagtgcaacgaaaagcatcaacacagccgag-----tgagaagaagccatagtagaaagatgaacgagaatgg 164980  T
Q  305 gaaaattagggttaactagaaagttttga 333  Q
    ||| |||||||||||||||||||||||||    
T  164979 gaatattagggttaactagaaagttttga 164951  T

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Target: scaffold0002; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 165338 - 165271
Alignment:
Q  7 aggcgatggtgcttgagatggaggagtagagattgacgatggggcgacagcaggagcagcagcgggag 74  Q
    |||||||||| |||||||||||||||||||||| ||| |||| |  ||||||||||||||||| ||||    
T  165338 aggcgatggtccttgagatggaggagtagagatcgaccatggagtcacagcaggagcagcagcaggag 165271  T

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Target: chr6 (Bit Score: 180; Significance: 5e-97; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 66 - 333
Target Start/End: Original strand, 14248513 - 14248775
Alignment:
Q  66 cagcgggagaaccagatgaagcagtcggtgaagaagagggagcactattcacagctaccggaggagacgccactggtgagtcagcggagggagaaatagc 165  Q
    |||| |||||||||||  |||||| |||||||| ||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||    
T  14248513 cagcaggagaaccagagaaagcagacggtgaaggagagggagcactattcagaggtaccggagaagacgccactggtgagtcagcggagggagaaatagc 14248612  T
Q  166 aggtgatggaaacggagaagacttaggggatgatggcggtgatcgagcaacagcggaactcagaaacagtgcaaccaaaagcatcaacacagcggtgtga 265  Q
    |||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |       
T  14248613 aggtgatggaaacggagaagactggggggatgatggtggtgatcgagcaacagcggaactcagaaacagtgcaacgaaaagcatcaacacagccgag--- 14248709  T
Q  266 tatgagaagaagccatagttgaaagatgaaggagaatgggaaaattagggttaactagaaagttttga 333  Q
      ||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||    
T  14248710 --tgagaagaagccatagtagaaagatgaacgagaatgggaatattagggttaactagaaagttttga 14248775  T

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Target: chr6; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 5 - 144
Target Start/End: Original strand, 14317026 - 14317165
Alignment:
Q  5 gtaggcgatggtgcttgagatggaggagtagagattgacgatggggcgacagcaggagcagcagcgggagaaccagatgaagcagtcggtgaagaagagg 104  Q
    |||||||||||| |||||||||| || ||||||||  | ||||| |||||| ||||||| ||||| ||||||||||| ||||||| |||||||| |||||    
T  14317026 gtaggcgatggtccttgagatggtggggtagagatccatgatggagcgacaacaggagctgcagcaggagaaccagaggaagcagacggtgaaggagagg 14317125  T
Q  105 gagcactattcacagctaccggaggagacgccactggtga 144  Q
    |||||||||||| || ||||||||||||||||||||||||    
T  14317126 gagcactattcagaggtaccggaggagacgccactggtga 14317165  T

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Target: chr6; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 167 - 258
Target Start/End: Original strand, 14317161 - 14317252
Alignment:
Q  167 ggtgatggaaacggagaagacttaggggatgatggcggtgatcgagcaacagcggaactcagaaacagtgcaaccaaaagcatcaacacagc 258  Q
    ||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14317161 ggtgatggaaacggagaagacttgggtgatgatggtggtgatcgagcaacagcggaactcagaaacagtgcaaccaaaagcatcaacacagc 14317252  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 5 - 88
Target Start/End: Original strand, 14351653 - 14351736
Alignment:
Q  5 gtaggcgatggtgcttgagatggaggagtagagattgacgatggggcgacagcaggagcagcagcgggagaaccagatgaagca 88  Q
    ||||||||||||||||||||||| |||||||||| ||| ||||| |  |||||||||||  |||||||||||||| | ||||||    
T  14351653 gtaggcgatggtgcttgagatggtggagtagagactgatgatggagtaacagcaggagcgacagcgggagaaccaaaggaagca 14351736  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 14248388 - 14248455
Alignment:
Q  7 aggcgatggtgcttgagatggaggagtagagattgacgatggggcgacagcaggagcagcagcgggag 74  Q
    |||||||||| |||||||||||||||||||||| ||| |||| |  ||||||||||||||||| ||||    
T  14248388 aggcgatggtccttgagatggaggagtagagatcgaccatggagtcacagcaggagcagcagcaggag 14248455  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 14248464 - 14248521
Alignment:
Q  5 gtaggcgatggtgcttgagatggaggagtagagattgacgatggggcgacagcaggag 62  Q
    |||||||||||| ||||||||||||| ||||||||  | ||||| |||||||||||||    
T  14248464 gtaggcgatggtccttgagatggaggggtagagatccaggatggagcgacagcaggag 14248521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 69
Target Start/End: Original strand, 14316950 - 14317012
Alignment:
Q  7 aggcgatggtgcttgagatggaggagtagagattgacgatggggcgacagcaggagcagcagc 69  Q
    |||||| ||||||||||| |||||||||||||| || ||||| |  ||| |||||||||||||    
T  14316950 aggcgagggtgcttgagacggaggagtagagatcgatgatggagtcacatcaggagcagcagc 14317012  T

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Target: scaffold1176 (Bit Score: 59; Significance: 9e-25; HSPs: 2)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 142 - 256
Target Start/End: Complemental strand, 1320 - 1206
Alignment:
Q  142 tgagtcagcggagggagaaatagcaggtgatggaaacggagaagacttaggggatgatggcggtgatcgagcaacagcggaactcagaaacagtgcaacc 241  Q
    ||||| ||| ||||||||||| ||||| |||||||||||||||||||| ||||||| ||  ||||||  |||||| | | |||| |||||||||||||||    
T  1320 tgagttagctgagggagaaatcgcaggagatggaaacggagaagacttgggggatgttgatggtgattaagcaacggtgaaacttagaaacagtgcaacc 1221  T
Q  242 aaaagcatcaacaca 256  Q
    |||||||||||||||    
T  1220 aaaagcatcaacaca 1206  T

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Target: scaffold1176; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 179 - 112
Alignment:
Q  7 aggcgatggtgcttgagatggaggagtagagattgacgatggggcgacagcaggagcagcagcgggag 74  Q
    ||||||||||||||||||||||||||||||||| || ||||| |  ||||||||||||||||| ||||    
T  179 aggcgatggtgcttgagatggaggagtagagatcgatgatggagtcacagcaggagcagcagcaggag 112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 125 - 317
Target Start/End: Original strand, 37245288 - 37245478
Alignment:
Q  125 ggaggagacgccactggtgagtcagcggagggagaaatagcaggtgatggaaacggagaagacttagg---ggatgatggcggtgatcgagcaacagcgg 221  Q
    |||| ||| ||||||||||||| |||||||||||||||    |||||||||||||||||| || | ||    |||||||| |||||||||||||| | ||    
T  37245288 ggagcagatgccactggtgagttagcggagggagaaattattggtgatggaaacggagaaaacatgggcgatgatgatggtggtgatcgagcaactgtgg 37245387  T
Q  222 aactcagaaacagtgcaaccaaaagcatcaacacagcggtgtgatatgagaagaagccatagttgaaagat---gaaggagaatgggaaaattagggtt 317  Q
    ||  ||| | |||||||||||||||||||| |||| ||||||        | ||||||||||| |||||||   ||||||||||||||| |||||||||    
T  37245388 aatccagcagcagtgcaaccaaaagcatcagcacaacggtgt--------aggaagccatagtagaaagatgaagaaggagaatgggaatattagggtt 37245478  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 37245129 - 37245194
Alignment:
Q  11 gatggtgcttgagatggaggagtagagattgacgatggggcgacagcaggagcagcagcgggagaa 76  Q
    ||||||||||||||||||||||||||||| |||||||| |  ||||||||||| ||| ||||||||    
T  37245129 gatggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggagcggcaacgggagaa 37245194  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 113 - 170
Target Start/End: Original strand, 37237814 - 37237871
Alignment:
Q  113 ttcacagctaccggaggagacgccactggtgagtcagcggagggagaaatagcaggtg 170  Q
    ||||||| ||| |||||||| ||||| |||||||||||||||||||| || |||||||    
T  37237814 ttcacaggtacgggaggagatgccaccggtgagtcagcggagggagagatcgcaggtg 37237871  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 37241922 - 37241981
Alignment:
Q  10 cgatggtgcttgagatggaggagtagagattgacgatggggcgacagcaggagcagcagc 69  Q
    ||||||||||| || |||||||||||||||||||||||| |  | ||||||||| |||||    
T  37241922 cgatggtgctttagttggaggagtagagattgacgatggagtaatagcaggagcggcagc 37241981  T

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