View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3898_low_17 (Length: 249)
Name: NF3898_low_17
Description: NF3898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3898_low_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 237
Target Start/End: Complemental strand, 43729256 - 43729038
Alignment:
| Q |
19 |
acttcaacatctctatctgaattaacctcattaatccttggttaactcttcctcctttgatccattttcttcactaatcttgaatactttctcaacctga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
43729256 |
acttcaacatctctatctgaattaacctcattaatccttggttaactcttcctcctttgatccattttcttcactaatcttgaatactttctcagcctga |
43729157 |
T |
|
| Q |
119 |
ccaccattcttgatttcagttaactctttcccatttgaactagtttcatcaaatagtggattcaccttcttgaattcagttgaatcttcctccttggaat |
218 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
43729156 |
ccaccattcttgatttctgttaactctttcccatttgaactagtttcatcaaatagtggattcaccttcttgaattcagttgaatctttctccttggaat |
43729057 |
T |
|
| Q |
219 |
cattttcgtcactcacctt |
237 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
43729056 |
cattttcgtcgctcacctt |
43729038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 61 - 169
Target Start/End: Complemental strand, 43687669 - 43687561
Alignment:
| Q |
61 |
taactcttcctcctttgatccattttcttcactaatcttgaatactttctcaacctgaccaccattcttgatttcagttaactctttcccatttgaacta |
160 |
Q |
| |
|
||||| ||||||||| || |||||||||||||| | ||| ||||||||||||||||||| |||||||||| |||||||||||||||| | ||||||||| |
|
|
| T |
43687669 |
taactattcctccttggaaccattttcttcactcactttggatactttctcaacctgacccccattcttgaattcagttaactctttctcctttgaacta |
43687570 |
T |
|
| Q |
161 |
gtttcatca |
169 |
Q |
| |
|
||||||||| |
|
|
| T |
43687569 |
gtttcatca |
43687561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 88 - 166
Target Start/End: Complemental strand, 43704497 - 43704419
Alignment:
| Q |
88 |
ttcactaatcttgaatactttctcaacctgaccaccattcttgatttcagttaactctttcccatttgaactagtttca |
166 |
Q |
| |
|
||||||| |||||||||||||||||||||| | |||||||||| |||||||||||||||| | ||||||||||||||| |
|
|
| T |
43704497 |
ttcactattcttgaatactttctcaacctgggccccattcttgaattcagttaactctttctcctttgaactagtttca |
43704419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 88 - 166
Target Start/End: Complemental strand, 43715468 - 43715390
Alignment:
| Q |
88 |
ttcactaatcttgaatactttctcaacctgaccaccattcttgatttcagttaactctttcccatttgaactagtttca |
166 |
Q |
| |
|
||||||| |||||||||||||||||||||| | |||||||||| |||||||||||||||| | ||||||||||||||| |
|
|
| T |
43715468 |
ttcactattcttgaatactttctcaacctgggccccattcttgaattcagttaactctttctcctttgaactagtttca |
43715390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 225
Target Start/End: Complemental strand, 43687541 - 43687490
Alignment:
| Q |
174 |
gtggattcaccttcttgaattcagttgaatcttcctccttggaatcattttc |
225 |
Q |
| |
|
||||||| || || |||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
43687541 |
gtggattgacatttttgaattcagttgaattttcctccttggaaccattttc |
43687490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University