View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3898_low_6 (Length: 442)
Name: NF3898_low_6
Description: NF3898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3898_low_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 18 - 442
Target Start/End: Complemental strand, 56316695 - 56316265
Alignment:
| Q |
18 |
tctagtccccatttttatggaaaaatcgtaaagcatctatatgaattgggtgcagtcactaatttcatcaccattggatggatttcttacataccctcca |
117 |
Q |
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| T |
56316695 |
tctagtccccatttttatggaaaaatcgtaaagcatctatatgaattgggtggagtcactaatttcatcaccattggatgaatttcttacataccctcca |
56316596 |
T |
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| Q |
118 |
ctcttttttaagtttgtccaataataaataaaaaatgaaaatactataacccaaaactgggagagagtatagttacgcagtactaaatccacaaactgaa |
217 |
Q |
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| T |
56316595 |
ctcttttttaagtttgtccaataataaataaaaaatg--------ataacccaaaactgggagagagtatagttacgtagtactaaatccacaaactgaa |
56316504 |
T |
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| Q |
218 |
aaatcaaagaacggaaaagaaatcaaccgcctaaaagttgaagcaatcagtgaatttcttttggtac------------------caacttccaggaagc |
299 |
Q |
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| T |
56316503 |
agatcaaagaacggaaaagaaatcaaccgcctaaaagttgaagcaatcagtgaatttcctgtggtacctattattgattaaacaacaacttctaggaagc |
56316404 |
T |
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| Q |
300 |
aaacacttatatatgcttcctagaagtttagtcttcgcaacccccaaagaataaatatgagatgacatattgctcaagtagatattgaccgtaaatatac |
399 |
Q |
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| T |
56316403 |
aaacact----tatgcttcctagaagtttagtcttcacaacccccaaagaagaaatatgagatgacatattgttcaagtagatattgacagtaaatatat |
56316308 |
T |
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| Q |
400 |
ctccattgtcagcaaaactactacactaatcttcattgttgtt |
442 |
Q |
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| T |
56316307 |
ctccattgtcagcaaaactactacactaatcttcattgttgtt |
56316265 |
T |
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