View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3898_low_7 (Length: 428)
Name: NF3898_low_7
Description: NF3898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3898_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 11 - 417
Target Start/End: Original strand, 20599810 - 20600216
Alignment:
| Q |
11 |
catcatcaaccgatcattatattagaatggaatcaacacctaattttgtgaaaagggtgcttagagaagcgcttggcgacgacattagcgatttcaaact |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
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| T |
20599810 |
catcatcaaccgatcattatattagaatggaatcaacacctaattttgtgaaaagggtgcttagagaagcacttggcgacgacgttagcgatttcaaact |
20599909 |
T |
|
| Q |
111 |
actggtatttgctgttcatgcttttattcttgaatcagggtttgttcgtgtggatcacgtttcaggtatggctatcagtagctctcatcttattgatgac |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
20599910 |
actggtatttgctgttcatgcttttattcttgaatcagggtttgttcgtgtggatcacgtttcaggtatggctatcagtatctctcatcttattgatgac |
20600009 |
T |
|
| Q |
211 |
atgtcttcttcttcagtgatatccttgaggtacactcttccttagattcttactaatggttcatctcattctttgaatttgaaaattcagacattagggc |
310 |
Q |
| |
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||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20600010 |
atgtcttcttcttcaatgatatccttgaggtatactcttcctgagattcttactaatggttcatctcattctttgaatttgaaaattcagacattagggc |
20600109 |
T |
|
| Q |
311 |
attttgtgaatgtttatggttcattgtatgatgatgttgggtcaagtgtacatatggtttatttagataaatgtagatttgccaagcctttagagtttct |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20600110 |
attttgtgaatgtttatggttcattgtatgatgatgttgggtcaagtgtacatatggtttatttagataaatgtagatttgccaagcctttagagtttct |
20600209 |
T |
|
| Q |
411 |
gctgatg |
417 |
Q |
| |
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||||||| |
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| T |
20600210 |
gctgatg |
20600216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 13 - 413
Target Start/End: Original strand, 6133632 - 6134032
Alignment:
| Q |
13 |
tcatcaaccgatcattatattagaatggaatcaacacctaattttgtgaaaagggtgcttagagaagcgcttggcgacgacattagcgatttcaaactac |
112 |
Q |
| |
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|||| ||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||| |
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| T |
6133632 |
tcatgaactgatcatcatattagaatggaatcaacacctgattttgtgaaaagggtgcttagagaagcgcttggtgatgacgttagcgatttcaaactac |
6133731 |
T |
|
| Q |
113 |
tggtatttgctgttcatgcttttattcttgaatcagggtttgttcgtgtggatcacgtttcaggtatggctatcagtagctctcatcttattgatgacat |
212 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||| ||| || || ||| |||||||||||| |||||||| |
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| T |
6133732 |
tggtatttgcagttcatgcttttattcttgaatcagggtttattcgtgtggatcgcgtttcgggtgtgaagattagttcctctcatcttatagatgacat |
6133831 |
T |
|
| Q |
213 |
gtcttcttcttcagtgatatccttgaggtacactcttccttagattcttactaatggttcatctcattctttgaatttgaaaattcagacattagggcat |
312 |
Q |
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||||||||||||| |||||| |||||||| ||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
6133832 |
gtcttcttcttcaatgatatgtttgaggtatactcttcctgagattcttactaatggttcacctcattcattgaatttgaaaattcagacattagggcat |
6133931 |
T |
|
| Q |
313 |
tttgtgaatgtttatggttcattgtatgatgatgttgggtcaagtgtacatatggtttatttagataaatgtagatttgccaagcctttagagtttctgc |
412 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||| ||||||||||| ||||| ||| |
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| T |
6133932 |
tttgtgaacgtttatggttcattgtatgatgatgttgggtcaaatgtacatagggtttatttagataaatatagattttccaagcctttaaagtttatgc |
6134031 |
T |
|
| Q |
413 |
t |
413 |
Q |
| |
|
| |
|
|
| T |
6134032 |
t |
6134032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 108; Significance: 4e-54; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 217 - 404
Target Start/End: Complemental strand, 47944862 - 47944675
Alignment:
| Q |
217 |
tcttcttcagtgatatccttgaggtacactcttccttagattcttactaatggttcatctcattctttgaatttgaaaattcagacattagggcattttg |
316 |
Q |
| |
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||||| ||| ||||||| |||||||| ||||||||| |||||||||| ||||||||||||||| || ||| |||||||||||||| |||||| |||||| |
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| T |
47944862 |
tcttcatcaatgatatctttgaggtatactcttcctgagattcttaccaatggttcatctcatgctgtgatattgaaaattcagactttagggaattttg |
47944763 |
T |
|
| Q |
317 |
tgaatgtttatggttcattgtatgatgatgttgggtcaagtgtacatatggtttatttagataaatgtagatttgccaagcctttaga |
404 |
Q |
| |
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||||||| ||||||||||||| |||||||| ||||||||| || |||| ||||||||||||||||| ||||||||| ||||||||||| |
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| T |
47944762 |
tgaatgtctatggttcattgtgtgatgatgctgggtcaagggtgcatagggtttatttagataaatctagatttgctaagcctttaga |
47944675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 76 - 224
Target Start/End: Complemental strand, 47945036 - 47944888
Alignment:
| Q |
76 |
gaagcgcttggcgacgacattagcgatttcaaactactggtatttgctgttcatgcttttattcttgaatcagggtttgttcgtgtggatcacgtttcag |
175 |
Q |
| |
|
||||||||||| || || |||| ||||| || || |||| ||||| ||||||||| ||||||||||||| ||||||||||||||||| | ||||| | |
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| T |
47945036 |
gaagcgcttggtgatgatgttagtgatttgaagctgttggtgtttgcggttcatgctgttattcttgaatctgggtttgttcgtgtggacgaggtttcgg |
47944937 |
T |
|
| Q |
176 |
gtatggctatcagtagctctcatcttattgatgacatgtcttcttcttc |
224 |
Q |
| |
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||||||| || ||| ||||| ||||| ||||||| |||||||||||||| |
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|
| T |
47944936 |
gtatggcgattagttgctctaatcttgttgatgatatgtcttcttcttc |
47944888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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