View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3898_low_8 (Length: 417)
Name: NF3898_low_8
Description: NF3898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3898_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 13 - 399
Target Start/End: Complemental strand, 43207128 - 43206742
Alignment:
| Q |
13 |
catcaagacttccactaaacaacgtaacaacctcatcatcatcttcacctccaccggaaattgccaccaacgactttaccggtttttcatgtccttccaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43207128 |
catcaagacttccactaaacaacgtaacaacctcatcatcatcttcacctccaccggaaattgccaccaacgactttaccggtttttcatgtccttccaa |
43207029 |
T |
|
| Q |
113 |
cactcctctacaacaatagctactacctcccttctccctctgccaaatcctcaccgttagatcagctgacccactcaccaacaaatcatcaacgttgact |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
43207028 |
cactcctctacaacaatagctactacctcccttctccctctgccaaatcctcaccgttagatcagctgacccactcgccaacaaatcatcaacgttgact |
43206929 |
T |
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| Q |
213 |
aaacaaagtattgccccactatgacccctcaacttttccttcaacacgatgtcgttttgtttatcctgccactgacaaatcgtcccgtcactcccacctg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43206928 |
aaacaaagtattgccccactatgacccctcaacttttccttcaacacgatgtcgttttgtttatcctgccactgacaaatcgtcccgtcactcccacctg |
43206829 |
T |
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| Q |
313 |
aaaacaacaccgttccatcactgttcaatgccaacgcattaacggctggtttctgcttccccaccatacacaccaacgtgtagcgtt |
399 |
Q |
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| T |
43206828 |
aaaacaacaccgttccatcactgttcaatgccaacgcattaacggctggtttctgcttccccaccatactcaccaacgtgtagcgtt |
43206742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 223
Target Start/End: Complemental strand, 37303891 - 37303823
Alignment:
| Q |
155 |
ccaaatcctcaccgttagatcagctgacccactcaccaacaaatcatcaacgttgactaaacaaagtat |
223 |
Q |
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||||||||| ||||| ||||||| || ||||||| |||||||||| |||||||| ||||||||||| |
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| T |
37303891 |
ccaaatcctaaccgtccgatcagcagaaccactcagcaacaaatcagaaacgttgatcaaacaaagtat |
37303823 |
T |
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