View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3899_high_13 (Length: 237)

Name: NF3899_high_13
Description: NF3899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3899_high_13
NF3899_high_13
[»] chr3 (12 HSPs)
chr3 (1-223)||(880896-881118)
chr3 (56-115)||(890249-890309)
chr3 (118-221)||(32706192-32706294)
chr3 (55-109)||(6231174-6231229)
chr3 (55-109)||(47149397-47149452)
chr3 (55-109)||(3306523-3306578)
chr3 (55-109)||(3314409-3314464)
chr3 (55-109)||(51675233-51675288)
chr3 (47-90)||(53590936-53590979)
chr3 (1-43)||(6231220-6231262)
chr3 (12-72)||(31151091-31151150)
chr3 (58-109)||(54692054-54692106)
[»] chr5 (4 HSPs)
chr5 (4-109)||(36208303-36208409)
chr5 (1-109)||(1190040-1190149)
chr5 (55-109)||(16092684-16092739)
chr5 (55-109)||(31473090-31473145)
[»] chr6 (5 HSPs)
chr6 (1-109)||(3396100-3396210)
chr6 (46-109)||(32447806-32447870)
chr6 (47-109)||(3234179-3234241)
chr6 (32-109)||(3390137-3390215)
chr6 (57-109)||(15719428-15719481)
[»] chr2 (6 HSPs)
chr2 (1-109)||(17848816-17848926)
chr2 (46-109)||(28196339-28196403)
chr2 (47-109)||(31733216-31733279)
chr2 (47-109)||(38414499-38414562)
chr2 (55-109)||(45239440-45239495)
chr2 (39-108)||(17848161-17848230)
[»] chr1 (7 HSPs)
chr1 (12-109)||(40133663-40133760)
chr1 (1-109)||(50079269-50079378)
chr1 (114-217)||(30883050-30883152)
chr1 (55-109)||(50077133-50077188)
chr1 (1-109)||(11457923-11458031)
chr1 (46-109)||(17318617-17318681)
chr1 (55-109)||(50308018-50308072)
[»] chr7 (8 HSPs)
chr7 (12-109)||(20137565-20137663)
chr7 (55-109)||(4296395-4296450)
chr7 (57-109)||(24817851-24817904)
chr7 (55-109)||(9680547-9680601)
chr7 (39-109)||(11355015-11355085)
chr7 (55-109)||(9678869-9678923)
chr7 (55-109)||(42222893-42222947)
chr7 (148-212)||(43438963-43439027)
[»] chr8 (6 HSPs)
chr8 (1-93)||(5623182-5623275)
chr8 (12-109)||(30480995-30481091)
chr8 (55-109)||(40878033-40878087)
chr8 (47-109)||(36865336-36865400)
chr8 (55-93)||(14419692-14419730)
chr8 (57-109)||(13858965-13859018)
[»] scaffold0004 (1 HSPs)
scaffold0004 (31-109)||(79666-79744)
[»] chr4 (9 HSPs)
chr4 (47-109)||(12401279-12401342)
chr4 (154-221)||(35530074-35530141)
chr4 (115-221)||(53461363-53461471)
chr4 (46-109)||(12396336-12396400)
chr4 (12-109)||(18537929-18538024)
chr4 (47-109)||(37313533-37313595)
chr4 (55-109)||(13543813-13543867)
chr4 (55-109)||(19095701-19095756)
chr4 (55-109)||(38928656-38928710)


Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 880896 - 881118
Alignment:
Q  1 aatgaaagtatcaattctgctccaaaagttgtgctccaatttttccaaatcgaactccgattttgacagcttcaacaaacttcaatttctccattttgag 100  Q
    ||||||||| |||||||| |||||||||||||||||  ||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  880896 aatgaaagtgtcaattctactccaaaagttgtgctctgatttttctaaatcggactccgattttgacagcttcaacaaacttcaacttctccattttgag 880995  T
Q  101 tcactttcatgacaaacattttaatcatttttgttagtagaagcataaaaagtggtcaaatacaatccaattttgttttagaactttgtaaggaaagaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  880996 tcactttcatgacaaacattttaatcatttttgttagtagatgcataaaaagaggtcaaatacaatccaattttgttttagaactttgtaagggaagaaa 881095  T
Q  201 ttgctcaatttagatgcacatct 223  Q
    |||||||||||||||||||||||    
T  881096 ttgctcaatttagatgcacatct 881118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 56 - 115
Target Start/End: Original strand, 890249 - 890309
Alignment:
Q  56 tccgattttgacagcttcaacaaacttcaatttctcc-attttgagtcactttcatgacaa 115  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  890249 tccgattttgacagcttcaacaaacttcaatttctccaattttgagtcactttcataacaa 890309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 118 - 221
Target Start/End: Original strand, 32706192 - 32706294
Alignment:
Q  118 attttaatcatttttgttagtagaagcataaaaagtggtcaaatacaatccaattttgttttagaactttgtaaggaaagaaattgctcaatttagatgc 217  Q
    ||||||||| |||||||||||||| | |||||||  |||||||||| ||||||| ||||||| ||||||| ||| |||  ||||||||||||||| ||||    
T  32706192 attttaatcttttttgttagtagacggataaaaaa-ggtcaaatactatccaatcttgttttggaactttttaaagaagtaaattgctcaatttaaatgc 32706290  T
Q  218 acat 221  Q
    ||||    
T  32706291 acat 32706294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 55 - 109
Target Start/End: Complemental strand, 6231229 - 6231174
Alignment:
Q  55 ctccgattttgacagcttcaacaaacttcaatttctcc-attttgagtcactttca 109  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  6231229 ctccgattttgacagcttcagcaaacttcaatttctccaattttgagtcactttca 6231174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 55 - 109
Target Start/End: Original strand, 47149397 - 47149452
Alignment:
Q  55 ctccgattttgacagcttcaacaaacttcaatttctcc-attttgagtcactttca 109  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  47149397 ctccgattttgacagcttcatcaaacttcaatttctccaattttgagtcactttca 47149452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 55 - 109
Target Start/End: Complemental strand, 3306578 - 3306523
Alignment:
Q  55 ctccgattttgacagcttcaacaaacttcaatttctcc-attttgagtcactttca 109  Q
    |||||||||||||||||| | ||||||||||||||||| |||||||||||||||||    
T  3306578 ctccgattttgacagctttagcaaacttcaatttctccaattttgagtcactttca 3306523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 109
Target Start/End: Complemental strand, 3314464 - 3314409
Alignment:
Q  55 ctccgattttgacagcttcaacaaacttcaatttc-tccattttgagtcactttca 109  Q
    |||| |||||||||||||||||||||||||||||| || ||||||| |||||||||    
T  3314464 ctcctattttgacagcttcaacaaacttcaatttcttcaattttgaatcactttca 3314409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 109
Target Start/End: Original strand, 51675233 - 51675288
Alignment:
Q  55 ctccgattttgacagcttcaacaaacttcaatttctcc-attttgagtcactttca 109  Q
    ||||||||||||||||||||  |||| ||||||||||| |||||||||||||||||    
T  51675233 ctccgattttgacagcttcagaaaacatcaatttctccaattttgagtcactttca 51675288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 90
Target Start/End: Complemental strand, 53590979 - 53590936
Alignment:
Q  47 aaatcgaactccgattttgacagcttcaacaaacttcaatttct 90  Q
    |||||| ||||||||||||||||||||| |||||||||||||||    
T  53590979 aaatcgtactccgattttgacagcttcagcaaacttcaatttct 53590936  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 6231262 - 6231220
Alignment:
Q  1 aatgaaagtatcaattctgctccaaaagttgtgctccaatttt 43  Q
    ||||||||| |||||||| |||||||||||||||||| |||||    
T  6231262 aatgaaagtgtcaattctactccaaaagttgtgctccgatttt 6231220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 31151150 - 31151091
Alignment:
Q  12 caattctgctccaaaagttgtgctccaatttttccaaatcgaactccgattttgacagctt 72  Q
    ||||||||||| |||| | ||||||| |||| || |||||| |||||||||||||||||||    
T  31151150 caattctgctctaaaaatcgtgctccgatttctc-aaatcgtactccgattttgacagctt 31151091  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 109
Target Start/End: Original strand, 54692054 - 54692106
Alignment:
Q  58 cgattttgacagcttcaacaaacttcaatttctcc-attttgagtcactttca 109  Q
    ||||||||||| || || ||||||||||||||||| ||||| |||||||||||    
T  54692054 cgattttgacaactccagcaaacttcaatttctccaattttaagtcactttca 54692106  T

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Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 4 - 109
Target Start/End: Complemental strand, 36208409 - 36208303
Alignment:
Q  4 gaaagtatcaattctgctccaaaagttgtgctccaatttttccaaatcgaactccgattttgacagcttcaacaaacttcaatttctcc-attttgagtc 102  Q
    |||||| |||||| |||||||||| |||| |||||||||||| ||||||  |||||||||||||||||||| |||||||||||||| || ||||| ||||    
T  36208409 gaaagtgtcaattttgctccaaaaattgtactccaatttttcaaaatcgtgctccgattttgacagcttcagcaaacttcaatttcaccaattttaagtc 36208310  T
Q  103 actttca 109  Q
    |||||||    
T  36208309 actttca 36208303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 1190040 - 1190149
Alignment:
Q  1 aatgaaagtatcaattctgctccaaaagtt-gtgctccaatttttccaaatcgaactccgattttgacagcttcaacaaacttcaatttctcc-attttg 98  Q
    |||||||||  ||||||||||||||||  | |||||||  ||| || ||||||  |||| ||||||||||||||| ||||||||||||||||| ||||||    
T  1190040 aatgaaagtgccaattctgctccaaaaaatcgtgctccgttttctc-aaatcgtgctccaattttgacagcttcagcaaacttcaatttctccaattttg 1190138  T
Q  99 agtcactttca 109  Q
    |||||||||||    
T  1190139 agtcactttca 1190149  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 55 - 109
Target Start/End: Original strand, 16092684 - 16092739
Alignment:
Q  55 ctccgattttgacagcttcaacaaacttcaatttctcc-attttgagtcactttca 109  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||    
T  16092684 ctccgattttgacagcttcagcaaacttcaatttctccaattttgagtcagtttca 16092739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 109
Target Start/End: Original strand, 31473090 - 31473145
Alignment:
Q  55 ctccgattttgacagcttcaacaaacttcaatttctcc-attttgagtcactttca 109  Q
    |||||||||||||||||||| ||||||||||||||||| ||||| | |||||||||    
T  31473090 ctccgattttgacagcttcagcaaacttcaatttctccaattttaaatcactttca 31473145  T

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Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 3396210 - 3396100
Alignment:
Q  1 aatgaaagtatcaattctgctcca-aaagttgtgctccaatttttccaaatcgaactccgattttgacagcttcaacaaacttcaatttctcc-attttg 98  Q
    |||||||||  ||||||||||||| ||| | ||||||| |||| |||||||||  || ||||||||||||||||| ||||||||||||||||| ||||||    
T  3396210 aatgaaagtgccaattctgctccagaaaatcgtgctccgatttctccaaatcgggcttcgattttgacagcttcagcaaacttcaatttctccaattttg 3396111  T
Q  99 agtcactttca 109  Q
    |||||||||||    
T  3396110 agtcactttca 3396100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 109
Target Start/End: Original strand, 32447806 - 32447870
Alignment:
Q  46 caaatcgaactccgattttgacagcttcaacaaacttcaatttctcc-attttgagtcactttca 109  Q
    ||||||| |||||  |||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  32447806 caaatcgtactccttttttgacagcttcaacaaacttaaatttctccaattttgagtcactttca 32447870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 47 - 109
Target Start/End: Original strand, 3234179 - 3234241
Alignment:
Q  47 aaatcgaactccgattttgacagcttcaacaaacttcaatttctcc-attttgagtcactttca 109  Q
    |||||| ||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||    
T  3234179 aaatcggactccgattttgacagcttcagcaaac-tcaatttctccaattttgagtcactttca 3234241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 32 - 109
Target Start/End: Complemental strand, 3390215 - 3390137
Alignment:
Q  32 tgctccaatttttccaaatcgaactccgattttgacagcttcaacaaacttcaatttctcc-attttgagtcactttca 109  Q
    |||||| |||| ||||||||   |||||||||||||||||||   |||||||||||||||| |||||||||||||||||    
T  3390215 tgctccgatttctccaaatcaggctccgattttgacagcttctgtaaacttcaatttctccaattttgagtcactttca 3390137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 109
Target Start/End: Complemental strand, 15719481 - 15719428
Alignment:
Q  57 ccgattttgacagcttcaacaaacttcaatttctcc-attttgagtcactttca 109  Q
    ||||||||||||| |||| ||||||| ||||||||| |||||||||||||||||    
T  15719481 ccgattttgacagattcagcaaactttaatttctccaattttgagtcactttca 15719428  T

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Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 17848926 - 17848816
Alignment:
Q  1 aatgaaagtatcaattctgctccaaaagtt-gtgctccaatttttccaaatcgaactccgattttgacagcttcaacaaacttcaatttctcc-attttg 98  Q
    ||||||||| |||||||| ||||||||  | ||| ||| ||||||||||||||  || |||||||||||| |||| ||||||||||||||||| ||||||    
T  17848926 aatgaaagtgtcaattcttctccaaaaaatcgtgttccgatttttccaaatcgggcttcgattttgacagtttcagcaaacttcaatttctccaattttg 17848827  T
Q  99 agtcactttca 109  Q
    |||||||||||    
T  17848826 agtcactttca 17848816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 46 - 109
Target Start/End: Complemental strand, 28196403 - 28196339
Alignment:
Q  46 caaatcgaactccgattttgacagcttcaacaaacttcaatttctcca-ttttgagtcactttca 109  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  28196403 caaatcgtactccgattttgacagcttcagcaaacttcaatttctccatttttgagtcactttca 28196339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 47 - 109
Target Start/End: Original strand, 31733216 - 31733279
Alignment:
Q  47 aaatcgaactccgattttgacagcttcaacaaacttcaatttctcc-attttgagtcactttca 109  Q
    |||||| ||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  31733216 aaatcgtactccaattttgacagcttcaccaaacttcaatttctccaattttgagtcactttca 31733279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 47 - 109
Target Start/End: Original strand, 38414499 - 38414562
Alignment:
Q  47 aaatcgaactccgattttgacagcttcaacaaacttcaatttctcc-attttgagtcactttca 109  Q
    |||||| ||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  38414499 aaatcgtactccaattttgacagcttcagcaaacttcaatttctccaattttgagtcactttca 38414562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 55 - 109
Target Start/End: Original strand, 45239440 - 45239495
Alignment:
Q  55 ctccgattttgacagcttcaacaaacttcaatttctcc-attttgagtcactttca 109  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  45239440 ctccgattttgacagcttcagcaaacttcaatttctccaattttgagtcactttca 45239495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 108
Target Start/End: Complemental strand, 17848230 - 17848161
Alignment:
Q  39 atttttccaaatcgaactccgattttgacagcttcaacaaacttcaatttctcc-attttgagtcactttc 108  Q
    |||| |||||||||  |||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||    
T  17848230 atttctccaaatcgggctccgattttgacagcttcagcaaac-tcaatttctccaattttgagtcactttc 17848161  T

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Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 40133760 - 40133663
Alignment:
Q  12 caattctgctccaaaagttgtgctccaatttttccaaatcgaactccgattttgacagcttcaacaaacttcaatttctc-cattttgagtcactttca 109  Q
    ||||| |||||||||||| || |||| ||||||| ||||||  |||||||||||||||||||| ||||||||||||||||  |||||||||||||||||    
T  40133760 caattatgctccaaaagtcgtactccgatttttc-aaatcgtgctccgattttgacagcttcagcaaacttcaatttctctaattttgagtcactttca 40133663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 50079269 - 50079378
Alignment:
Q  1 aatgaaagtatcaattctgctccaaaagttgtgctccaatttttccaaatcgaactccgattttgacagcttcaacaaacttcaatttc-tccattttga 99  Q
    |||||||||  ||| |||||||||||| | ||||||| |||| |||||||||   ||||||||||||||||||| |||||||||||||| || |||| ||    
T  50079269 aatgaaagtgccaaatctgctccaaaaatcgtgctccgatttctccaaatcgggttccgattttgacagcttcagcaaacttcaatttcttcaatttgga 50079368  T
Q  100 gtcactttca 109  Q
    ||||||||||    
T  50079369 gtcactttca 50079378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 114 - 217
Target Start/End: Original strand, 30883050 - 30883152
Alignment:
Q  114 aaacattttaatcatttttgttagtagaagcataaaaagtggtcaaatacaatccaattttgttttagaactttgtaaggaaagaaattgctcaatttag 213  Q
    |||||| |||||| |||||||||||||| | |||||||  |||||||||| || |||| |||||||||||  |||||| ||||||||||| |||||||||    
T  30883050 aaacatcttaatcttttttgttagtagatggataaaaaa-ggtcaaatactattcaatcttgttttagaaacttgtaaagaaagaaattgttcaatttag 30883148  T
Q  214 atgc 217  Q
    ||||    
T  30883149 atgc 30883152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 55 - 109
Target Start/End: Original strand, 50077133 - 50077188
Alignment:
Q  55 ctccgattttgacagcttcaacaaacttcaatttctc-cattttgagtcactttca 109  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  50077133 ctccgattttgacagcttcaacaaacttcaatttctctaattttgagtcactttca 50077188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 11457923 - 11458031
Alignment:
Q  1 aatgaaagtatcaattctgctccaaaagttgtgctccaatttttccaaatcgaactccgattttgacagcttcaacaaacttcaatttctcc-attttga 99  Q
    ||||||||| ||||||||||||||||| |  | || | |||| ||||||||||||||| ||||||||| ||||| ||||| |||| |||||| | |||||    
T  11457923 aatgaaagtgtcaattctgctccaaaaatcatacttcgatttctccaaatcgaactccaattttgacaacttcagcaaac-tcaaattctccaaatttga 11458021  T
Q  100 gtcactttca 109  Q
    |||| |||||    
T  11458022 gtcaatttca 11458031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 109
Target Start/End: Complemental strand, 17318681 - 17318617
Alignment:
Q  46 caaatcgaactccgattttgacagcttcaacaaacttcaatttctcc-attttgagtcactttca 109  Q
    |||||||  ||||||| |||| ||||||| ||||||||||||||||| |||||||||||||||||    
T  17318681 caaatcgtgctccgatattgatagcttcagcaaacttcaatttctccgattttgagtcactttca 17318617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 109
Target Start/End: Original strand, 50308018 - 50308072
Alignment:
Q  55 ctccgattttgacagcttcaacaaacttcaatttctcc-attttgagtcactttca 109  Q
    |||| ||||||||||||||| ||||| ||||||||||| |||||||||||||||||    
T  50308018 ctccaattttgacagcttcagcaaac-tcaatttctccaattttgagtcactttca 50308072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 109
Target Start/End: Original strand, 20137565 - 20137663
Alignment:
Q  12 caattctgctccaaaagttgtgctccaatttttccaaatcgaactccgattttgacagcttcaacaaacttcaatttctcc-attttgagtcactttca 109  Q
    |||||||||||| ||| | || |||| |||||| |||||||  |||||||| | ||||||||| ||||||||||||||||| |||||||||||||||||    
T  20137565 caattctgctccgaaaatcgtactccgattttttcaaatcgtgctccgattataacagcttcagcaaacttcaatttctccaattttgagtcactttca 20137663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 55 - 109
Target Start/End: Original strand, 4296395 - 4296450
Alignment:
Q  55 ctccgattttgacagcttcaacaaacttcaatttctcc-attttgagtcactttca 109  Q
    |||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||    
T  4296395 ctccgattttgacagcttcagcaagcttcaatttctccaattttgagtcactttca 4296450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 109
Target Start/End: Original strand, 24817851 - 24817904
Alignment:
Q  57 ccgattttgacagcttcaacaaacttcaatttctcc-attttgagtcactttca 109  Q
    ||||||||||||  |||||||||||||||||||||| |||||||||||||||||    
T  24817851 ccgattttgacaaattcaacaaacttcaatttctccaattttgagtcactttca 24817904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 109
Target Start/End: Complemental strand, 9680601 - 9680547
Alignment:
Q  55 ctccgattttgacagcttcaacaaacttcaatttctcc-attttgagtcactttca 109  Q
    |||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||    
T  9680601 ctccgattttgacagcttcagcaaactt-aatttctccaattttgagtcactttca 9680547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 109
Target Start/End: Complemental strand, 11355085 - 11355015
Alignment:
Q  39 atttttccaaatcgaactccgattttgacagcttcaacaaacttcaatttc-tccattttgagtcactttca 109  Q
    |||| |||||||||  |||||||||||||||||||| ||||| |||||||| || |||||||||||||||||    
T  11355085 atttctccaaatcgggctccgattttgacagcttcagcaaac-tcaatttcttcaattttgagtcactttca 11355015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 109
Target Start/End: Complemental strand, 9678923 - 9678869
Alignment:
Q  55 ctccgattttgacagcttcaacaaacttcaatttctcc-attttgagtcactttca 109  Q
    ||||||||||||||||||||||| |||| ||||||||| ||||||||||| |||||    
T  9678923 ctccgattttgacagcttcaacatactt-aatttctccaattttgagtcattttca 9678869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 109
Target Start/End: Complemental strand, 42222947 - 42222893
Alignment:
Q  55 ctccgattttgacagcttcaacaaacttcaatttctcc-attttgagtcactttca 109  Q
    |||||||||||||||||||| ||||| ||||||||||| ||||| |||||||||||    
T  42222947 ctccgattttgacagcttcagcaaac-tcaatttctccaattttaagtcactttca 42222893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 212
Target Start/End: Original strand, 43438963 - 43439027
Alignment:
Q  148 aaaagtggtcaaatacaatccaattttgttttagaactttgtaaggaaagaaattgctcaattta 212  Q
    |||| ||||||||||| |||||||  ||||||| |||||| ||  ||| ||||||||||||||||    
T  43438963 aaaaatggtcaaatactatccaatcatgttttaaaactttatagagaatgaaattgctcaattta 43439027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 5623182 - 5623275
Alignment:
Q  1 aatgaaagtatcaattctgctccaa-aagttgtgctccaatttttccaaatcgaactccgattttgacagcttcaacaaacttcaatttctcca 93  Q
    |||||||||  |||||||||||||| || | ||||||| |||| |||||||||  |||||||||||||||||||| ||||||| ||||||||||    
T  5623182 aatgaaagtgccaattctgctccaataaatcgtgctccgatttctccaaatcgggctccgattttgacagcttcagcaaactttaatttctcca 5623275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 109
Target Start/End: Original strand, 30480995 - 30481091
Alignment:
Q  12 caattctgctccaaaagttgtgctccaatttttccaaatcgaactccgattttgacagcttcaacaaacttcaatttctcc-attttgagtcactttca 109  Q
    ||||| |||||||||| | || |||| ||||||| ||||||  |||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||    
T  30480995 caattgtgctccaaaa-tcgtactccgatttttc-aaatcgtgctccgattttgacaacttcagcaaacttcaatttctccaattttgagtcactttca 30481091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 109
Target Start/End: Original strand, 40878033 - 40878087
Alignment:
Q  55 ctccgattttgacagcttcaacaaacttcaatttctcc-attttgagtcactttca 109  Q
    |||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||    
T  40878033 ctccgattttgacagcttcagcaaac-tcaatttctccaattttgagtcactttca 40878087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 109
Target Start/End: Complemental strand, 36865400 - 36865336
Alignment:
Q  47 aaatcgaactccgattttgacagcttcaac-aaacttcaatttctcc-attttgagtcactttca 109  Q
    |||||| ||||||||||||||| ||||| | |||||||||||||||| ||||| |||||||||||    
T  36865400 aaatcgtactccgattttgacaacttcagcaaaacttcaatttctccaattttaagtcactttca 36865336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 93
Target Start/End: Original strand, 14419692 - 14419730
Alignment:
Q  55 ctccgattttgacagcttcaacaaacttcaatttctcca 93  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  14419692 ctccgattttgacagattcagcaaacttcaatttctcca 14419730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 109
Target Start/End: Original strand, 13858965 - 13859018
Alignment:
Q  57 ccgattttgacagcttcaacaaacttcaatttctcc-attttgagtcactttca 109  Q
    ||||||||||||| |||||||||||| ||||||||| ||||| ||||| |||||    
T  13858965 ccgattttgacagattcaacaaactttaatttctccaatttttagtcattttca 13859018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 31 - 109
Target Start/End: Complemental strand, 79744 - 79666
Alignment:
Q  31 gtgctccaatttttccaaatcgaactccgattttgacagcttcaacaaacttcaatttctcc-attttgagtcactttca 109  Q
    ||||||| ||||| ||| ||||  |||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||    
T  79744 gtgctccgattttgccagatcgtgctccgattttgacagcttcagcaaac-tcaatttctccaattttgagtcactttca 79666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 47 - 109
Target Start/End: Original strand, 12401279 - 12401342
Alignment:
Q  47 aaatcgaactccgattttgacagcttcaacaaacttcaatttctcc-attttgagtcactttca 109  Q
    |||||| ||||||||||||||||||||| ||||||| ||||||||| ||||||||| |||||||    
T  12401279 aaatcgtactccgattttgacagcttcagcaaacttgaatttctccaattttgagtaactttca 12401342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 154 - 221
Target Start/End: Complemental strand, 35530141 - 35530074
Alignment:
Q  154 ggtcaaatacaatccaattttgttttagaactttgtaaggaaagaaattgctcaatttagatgcacat 221  Q
    ||||||| || ||||||| ||||||||||| ||| ||| |||| ||||||||||||||||||||||||    
T  35530141 ggtcaaaaactatccaatattgttttagaaatttttaaagaaataaattgctcaatttagatgcacat 35530074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 221
Target Start/End: Complemental strand, 53461471 - 53461363
Alignment:
Q  115 aacattttaatcatttttgttagtagaagcataaaaagtg--gtcaaatacaatccaattttgttttagaactttgtaaggaaagaaattgctcaattta 212  Q
    |||||||||||| |||||||| ||||| | |||||||     ||||||||  ||||||| ||||||||||||||| ||| |||| | |||||||| ||||    
T  53461471 aacattttaatcttttttgtttgtagatggataaaaaaaaatgtcaaatattatccaatcttgttttagaactttttaaagaaatagattgctcatttta 53461372  T
Q  213 gatgcacat 221  Q
    |||||||||    
T  53461371 gatgcacat 53461363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 109
Target Start/End: Original strand, 12396336 - 12396400
Alignment:
Q  46 caaatcgaactccgattttgacagcttcaacaaacttcaatttctcc-attttgagtcactttca 109  Q
    |||||||  |||||||||||||||||||| ||||||| ||||||||| ||||||||| |||||||    
T  12396336 caaatcgggctccgattttgacagcttcagcaaacttgaatttctccaattttgagtaactttca 12396400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 109
Target Start/End: Original strand, 18537929 - 18538024
Alignment:
Q  12 caattctgctccaaaagttgtgctccaatttttccaaatcgaactccgattttgacagcttcaacaaacttcaatttc-tccattttgagtcactttca 109  Q
    ||||||||||| |||| | || |||| ||||||| |||||| | |||||||||||||||||||   |||||||||||| || |||||||||||||||||    
T  18537929 caattctgctctaaaaatcgtactccgatttttc-aaatcgtattccgattttgacagcttca--gaacttcaatttcttcaattttgagtcactttca 18538024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 109
Target Start/End: Original strand, 37313533 - 37313595
Alignment:
Q  47 aaatcgaactccgattttgacagcttcaacaaacttcaatttctcc-attttgagtcactttca 109  Q
    |||||| ||||||||||||||||||||   |||||||||||||||| |||||||||||||||||    
T  37313533 aaatcgtactccgattttgacagcttc-gtaaacttcaatttctccaattttgagtcactttca 37313595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 109
Target Start/End: Complemental strand, 13543867 - 13543813
Alignment:
Q  55 ctccgattttgacagcttcaacaaacttcaatttctcc-attttgagtcactttca 109  Q
    ||||||||||||||||||||||| |||| ||||||||| ||||||||||| |||||    
T  13543867 ctccgattttgacagcttcaacatactt-aatttctccaattttgagtcattttca 13543813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 109
Target Start/End: Complemental strand, 19095756 - 19095701
Alignment:
Q  55 ctccgattttgacagcttcaacaaacttcaatttctcc-attttgagtcactttca 109  Q
    |||||||||||||| ||||| ||||||||||||||||| ||||| | |||||||||    
T  19095756 ctccgattttgacaacttcagcaaacttcaatttctccaattttaaatcactttca 19095701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 109
Target Start/End: Original strand, 38928656 - 38928710
Alignment:
Q  55 ctccgattttgacagcttcaacaaacttcaatttctcc-attttgagtcactttca 109  Q
    |||||||||||||||||||| ||||| ||||||||||| ||||||||||| |||||    
T  38928656 ctccgattttgacagcttcagcaaac-tcaatttctccaattttgagtcaatttca 38928710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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