View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3899_low_1 (Length: 597)

Name: NF3899_low_1
Description: NF3899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3899_low_1
NF3899_low_1
[»] scaffold0446 (3 HSPs)
scaffold0446 (272-556)||(9964-10247)
scaffold0446 (112-251)||(9691-9830)
scaffold0446 (247-285)||(9915-9953)
[»] chr4 (6 HSPs)
chr4 (272-556)||(56111100-56111383)
chr4 (18-251)||(56110733-56110966)
chr4 (34-150)||(23292986-23293103)
chr4 (99-150)||(54580023-54580074)
chr4 (247-285)||(56111051-56111089)
chr4 (90-150)||(15029764-15029824)
[»] chr8 (4 HSPs)
chr8 (441-583)||(1141771-1141913)
chr8 (99-150)||(22651984-22652035)
chr8 (90-150)||(12985391-12985451)
chr8 (99-147)||(31236580-31236628)
[»] chr6 (13 HSPs)
chr6 (18-251)||(26016500-26016733)
chr6 (272-355)||(26016867-26016950)
chr6 (273-355)||(26156241-26156323)
chr6 (97-154)||(32299281-32299338)
chr6 (94-150)||(9617437-9617493)
chr6 (91-150)||(7377979-7378038)
chr6 (91-150)||(9629383-9629442)
chr6 (99-150)||(33001289-33001340)
chr6 (99-209)||(34595142-34595252)
chr6 (92-150)||(7265593-7265651)
chr6 (91-152)||(20371108-20371169)
chr6 (92-145)||(30866149-30866202)
chr6 (86-150)||(9025494-9025558)
[»] chr3 (3 HSPs)
chr3 (91-150)||(7928450-7928509)
chr3 (92-149)||(13807170-13807227)
chr3 (114-150)||(35222961-35222997)
[»] chr2 (4 HSPs)
chr2 (99-150)||(37558985-37559036)
chr2 (114-151)||(38442330-38442367)
chr2 (92-152)||(18570973-18571033)
chr2 (114-209)||(20242668-20242763)
[»] chr7 (10 HSPs)
chr7 (91-149)||(19206050-19206108)
chr7 (91-150)||(2525844-2525903)
chr7 (99-150)||(3991332-3991383)
chr7 (114-149)||(24146839-24146874)
chr7 (99-149)||(7438714-7438764)
chr7 (91-149)||(42720891-42720949)
chr7 (101-150)||(9778510-9778559)
chr7 (91-147)||(3520345-3520401)
chr7 (91-150)||(11072298-11072355)
chr7 (105-149)||(48438560-48438604)
[»] chr5 (4 HSPs)
chr5 (91-148)||(38749565-38749622)
chr5 (99-150)||(22423812-22423863)
chr5 (91-150)||(28588674-28588733)
chr5 (56-150)||(13287399-13287493)
[»] chr1 (7 HSPs)
chr1 (99-150)||(1486709-1486760)
chr1 (91-142)||(17425101-17425152)
chr1 (99-150)||(38078661-38078712)
chr1 (92-150)||(6427351-6427409)
chr1 (91-149)||(36878461-36878519)
chr1 (91-143)||(398772-398824)
chr1 (114-150)||(29163381-29163417)


Alignment Details
Target: scaffold0446 (Bit Score: 168; Significance: 9e-90; HSPs: 3)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 272 - 556
Target Start/End: Original strand, 9964 - 10247
Alignment:
Q  272 cacaaacttaagattctagcaacaactcaaacatattaagcagagttcaccaatcaagatacttcatcctctttccaatgtcctgaaagctaaaaaatca 371  Q
    |||||||||||||  |||| ||||||||||||||||||||||||||||| |||||  ||||||||||||||||| || |||||||| |||||||||||||    
T  9964 cacaaacttaagagcctag-aacaactcaaacatattaagcagagttcatcaatccggatacttcatcctcttttcactgtcctgagagctaaaaaatca 10062  T
Q  372 acacatcatatcataccnnnnnnnctcccaatagctttagagtggggctgaaccattcaacataataacaaatatcctaattccaaatatagaatgtaaa 471  Q
     ||||||||||||||||       ||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  10063 gcacatcatatcataccaaaaaa-ctcccaacaactttagagtggggctgaaccactcaacataataacaaatatcctaattccaaagatagaatgtaaa 10161  T
Q  472 tcacttgtaaattatcattcatctcttttttc-ttatatatacatttattaacactagtgctcatttacaattattcctctattag 556  Q
    ||||||||||||||||||||||||||| |||| |||| ||||||||||||| ||||||| ||| ||||||||||||||| ||||||    
T  10162 tcacttgtaaattatcattcatctcttatttctttatttatacatttattagcactagttctcgtttacaattattcctttattag 10247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0446; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 112 - 251
Target Start/End: Original strand, 9691 - 9830
Alignment:
Q  112 acatcacataattcaatataattatacgtgtcggtgtcgaaaatcaacacgtgtctgatactaagacacacttaatcgaagagtatccgtgcttcataaa 211  Q
    |||||||||||||||||||||| ||||| |||||| |  |||||| || ||||||||| |   || |||  ||||| || ||||||  ||||||||||||    
T  9691 acatcacataattcaatataatgatacgggtcggtcttaaaaatcgacgcgtgtctgacatcgag-cacggttaattgaggagtatatgtgcttcataaa 9789  T
Q  212 ccaatgcattaatcctcc-taagcaaagatagcaatactta 251  Q
    ||||| ||||||||||||  |||||||||||||||||||||    
T  9790 ccaatacattaatcctccaaaagcaaagatagcaatactta 9830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0446; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 247 - 285
Target Start/End: Original strand, 9915 - 9953
Alignment:
Q  247 acttaaactcctttagtaatatcaccacaaacttaagat 285  Q
    ||||||| ||||||||||||||| |||||||||||||||    
T  9915 acttaaaatcctttagtaatatctccacaaacttaagat 9953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 164; Significance: 2e-87; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 272 - 556
Target Start/End: Original strand, 56111100 - 56111383
Alignment:
Q  272 cacaaacttaagattctagcaacaactcaaacatattaagcagagttcaccaatcaagatacttcatcctctttccaatgtcctgaaagctaaaaaatca 371  Q
    |||||||||||||  |||| ||||||||||||||||||||||||||||| |||||  ||||||||||||||||| || | |||||| |||||||||||||    
T  56111100 cacaaacttaagagcctag-aacaactcaaacatattaagcagagttcatcaatccggatacttcatcctcttttcactatcctgagagctaaaaaatca 56111198  T
Q  372 acacatcatatcataccnnnnnnnctcccaatagctttagagtggggctgaaccattcaacataataacaaatatcctaattccaaatatagaatgtaaa 471  Q
     ||||||||||||||||       ||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  56111199 gcacatcatatcataccaaaaaa-ctcccaacaactttagagtggggctgaaccactcaacataataacaaatatcctaattccaaagatagaatgtaaa 56111297  T
Q  472 tcacttgtaaattatcattcatctcttttttc-ttatatatacatttattaacactagtgctcatttacaattattcctctattag 556  Q
    ||||||||||||||||||||||||||| |||| |||| ||||||||||||| ||||||| ||| ||||||||||||||| ||||||    
T  56111298 tcacttgtaaattatcattcatctcttatttctttatttatacatttattagcactagttctcgtttacaattattcctttattag 56111383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 56110733 - 56110966
Alignment:
Q  18 accaaaatcaatcaatacctatgaagcacaggtacataacggacactagacacaacacgaacaaaaacacatagacaccgataataatttgtaaacatca 117  Q
    |||||||| |||||||||||||||||||||| ||||||||  | |||||| |||||||||||| || ||||| |||||||||||||||||||||||||||    
T  56110733 accaaaattaatcaatacctatgaagcacagatacataacataaactagaaacaacacgaacacaagcacatggacaccgataataatttgtaaacatca 56110832  T
Q  118 cataattcaatataattatacgtgtcggtgtcgaaaatcaacacgtgtctgatactaagacacacttaatcgaagagtatccgtgcttcataaaccaatg 217  Q
    |||||||||||||||||||| ||||||||||  |||||| ||  |||||||| |   || ||| |||||| || ||||||  |||||||||||||||||     
T  56110833 cataattcaatataattatatgtgtcggtgtaaaaaatcgacgagtgtctgacatcgag-cacgcttaattgaggagtatatgtgcttcataaaccaata 56110931  T
Q  218 cattaatcctcc-taagcaaagatagcaatactta 251  Q
    ||||||||||||  |||||||||||||||||||||    
T  56110932 cattaatcctccaaaagcaaagatagcaatactta 56110966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 34 - 150
Target Start/End: Complemental strand, 23293103 - 23292986
Alignment:
Q  34 acctatgaagcacaggtacata-acggacactagacacaacacgaacaaaaacacatagacaccgataataatttgtaaacatcacataattcaatataa 132  Q
    ||||||||||||||| |||  | ||||||||  ||||| ||||| ||||  ||||   ||||| | |||||||||| ||| ||||||||||||| |||||    
T  23293103 acctatgaagcacagatacggacacggacaccggacacgacacggacaatgacacgccgacacagctaataatttgaaaaaatcacataattcagtataa 23293004  T
Q  133 ttatacgtgtcggtgtcg 150  Q
    ||| | ||||||||||||    
T  23293003 ttacaagtgtcggtgtcg 23292986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 150
Target Start/End: Complemental strand, 54580074 - 54580023
Alignment:
Q  99 taataatttgtaaacatcacataattcaatataattatacgtgtcggtgtcg 150  Q
    |||||||||| ||| ||||||||||||| | |||||||| ||||||||||||    
T  54580074 taataatttgaaaaaatcacataattcagtgtaattataagtgtcggtgtcg 54580023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 247 - 285
Target Start/End: Original strand, 56111051 - 56111089
Alignment:
Q  247 acttaaactcctttagtaatatcaccacaaacttaagat 285  Q
    ||||||| ||||||||||||||| |||||||||||||||    
T  56111051 acttaaaatcctttagtaatatctccacaaacttaagat 56111089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 90 - 150
Target Start/End: Original strand, 15029764 - 15029824
Alignment:
Q  90 agacaccgataataatttgtaaacatcacataattcaatataattatacgtgtcggtgtcg 150  Q
    |||||| | |||||||||| ||| ||||||||||||| | |||||||| |||| |||||||    
T  15029764 agacactgctaataatttgaaaatatcacataattcagtgtaattatatgtgttggtgtcg 15029824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 135; Significance: 5e-70; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 441 - 583
Target Start/End: Original strand, 1141771 - 1141913
Alignment:
Q  441 aaatatcctaattccaaatatagaatgtaaatcacttgtaaattatcattcatctcttttttcttatatatacatttattaacactagtgctcatttaca 540  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1141771 aaatatcctaattccaaatatagaatgtaaatcacttgtaaattgtcattcatctcttttttcttatatatacatttattagcactagtgctcatttaca 1141870  T
Q  541 attattcctctattagatatatgacgtggtttcacgtaagagg 583  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  1141871 attattcctctattagatatatgacgtggtttcacgtaagagg 1141913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 99 - 150
Target Start/End: Original strand, 22651984 - 22652035
Alignment:
Q  99 taataatttgtaaacatcacataattcaatataattatacgtgtcggtgtcg 150  Q
    |||||||||| ||| |||||||||||||||||||||| | ||||||||||||    
T  22651984 taataatttgaaaaaatcacataattcaatataattacaagtgtcggtgtcg 22652035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 90 - 150
Target Start/End: Original strand, 12985391 - 12985451
Alignment:
Q  90 agacaccgataataatttgtaaacatcacataattcaatataattatacgtgtcggtgtcg 150  Q
    ||||||| |||||||||||  || ||||||||||||||| |||| |||  |||||||||||    
T  12985391 agacacctataataatttgagaaaatcacataattcaatgtaatcatatatgtcggtgtcg 12985451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 31236628 - 31236580
Alignment:
Q  99 taataatttgtaaacatcacataattcaatataattatacgtgtcggtg 147  Q
    ||||||||||  || ||||||||||||||| |||||||| |||||||||    
T  31236628 taataatttgagaaaatcacataattcaatgtaattatatgtgtcggtg 31236580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 123; Significance: 7e-63; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 26016500 - 26016733
Alignment:
Q  18 accaaaatcaatcaatacctatgaagcacaggtacataacggacactagacacaacacgaacaaaaacacatagacaccgataataatttgtaaacatca 117  Q
    |||||||| |||||||||||||||||||||| | ||||||  | |||||| |||||||||||| || ||||| |||||||||||||||||||||||||||    
T  26016500 accaaaattaatcaatacctatgaagcacagatgcataacaaaaactagaaacaacacgaacacaagcacatggacaccgataataatttgtaaacatca 26016599  T
Q  118 cataattcaatataattatacgtgtcggtgtcgaaaatcaacacgtgtctgatactaagacacacttaatcgaagagtatccgtgcttcataaaccaatg 217  Q
    |||||||||||||||||||| |||||  |||| |||||| || ||||||||| |   |||||| | ||||||| |||||||||||||||||||||||||     
T  26016600 cataattcaatataattatatgtgtctctgtcaaaaatcgacgcgtgtctgacaacgagacacgc-taatcgaggagtatccgtgcttcataaaccaata 26016698  T
Q  218 cattaatcctcc-taagcaaagatagcaatactta 251  Q
    ||||||||||||  |||||||||||||||||||||    
T  26016699 cattaatcctccaaaagcaaagatagcaatactta 26016733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 272 - 355
Target Start/End: Original strand, 26016867 - 26016950
Alignment:
Q  272 cacaaacttaagattctagcaacaactcaaacatattaagcagagttcaccaatcaagatacttcatcctctttccaatgtcct 355  Q
    ||||||||| |||  ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| |||||||||    
T  26016867 cacaaacttgagagcctagcaacaactcaaacatattaagcagagttcaccaatccggatacttcatcctcttttcaatgtcct 26016950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 273 - 355
Target Start/End: Original strand, 26156241 - 26156323
Alignment:
Q  273 acaaacttaagattctagcaacaactcaaacatattaagcagagttcaccaatcaagatacttcatcctctttccaatgtcct 355  Q
    |||||||| |||  ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| |||||||||    
T  26156241 acaaacttgagagcctagcaacaactcaaacatattaagcagagttcaccaatccggatacttcatcctcttttcaatgtcct 26156323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 97 - 154
Target Start/End: Original strand, 32299281 - 32299338
Alignment:
Q  97 gataataatttgtaaacatcacataattcaatataattatacgtgtcggtgtcgaaaa 154  Q
    ||||||||||||  || ||||||||||||||| || |||||||||||||||| |||||    
T  32299281 gataataatttgagaaaatcacataattcaatgtagttatacgtgtcggtgttgaaaa 32299338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 94 - 150
Target Start/End: Original strand, 9617437 - 9617493
Alignment:
Q  94 accgataataatttgtaaacatcacataattcaatataattatacgtgtcggtgtcg 150  Q
    |||| ||||||||||  || ||||||||||||||| |||||||| ||||||||||||    
T  9617437 accggtaataatttgagaaaatcacataattcaatgtaattatatgtgtcggtgtcg 9617493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 150
Target Start/End: Original strand, 7377979 - 7378038
Alignment:
Q  91 gacaccgataataatttgtaaacatcacataattcaatataattatacgtgtcggtgtcg 150  Q
    ||||||| ||| ||||||  || ||||||||||||||| |||||||| ||||||||||||    
T  7377979 gacaccgctaaaaatttgagaaaatcacataattcaatgtaattatatgtgtcggtgtcg 7378038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 150
Target Start/End: Original strand, 9629383 - 9629442
Alignment:
Q  91 gacaccgataataatttgtaaacatcacataattcaatataattatacgtgtcggtgtcg 150  Q
    |||||||  |||||||||  || ||||||||||||||| |||||||| ||||||||||||    
T  9629383 gacaccgccaataatttgagaaaatcacataattcaatgtaattatatgtgtcggtgtcg 9629442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 150
Target Start/End: Complemental strand, 33001340 - 33001289
Alignment:
Q  99 taataatttgtaaacatcacataattcaatataattatacgtgtcggtgtcg 150  Q
    |||||||||| ||| ||||||||||| ||| |||||||| ||||||||||||    
T  33001340 taataatttgaaaaaatcacataattaaatgtaattatatgtgtcggtgtcg 33001289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 209
Target Start/End: Original strand, 34595142 - 34595252
Alignment:
Q  99 taataatttgtaaacatcacataattcaatataattatacgtgtcggtgtcgaaaatcaacacgtgtctgatactaagacacacttaat-cgaagagtat 197  Q
    |||||||||| ||| ||||||||||||| | |||||| | |||||||||||| | | | |||||||||||| ||   ||||||| |||| ||| |||| |    
T  34595142 taataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcggaca-cgacacgtgtctgacaccgggacacacctaatccgaggagtgt 34595240  T
Q  198 ccgtgcttcata 209  Q
    ||||||||||||    
T  34595241 ccgtgcttcata 34595252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 92 - 150
Target Start/End: Complemental strand, 7265651 - 7265593
Alignment:
Q  92 acaccgataataatttgtaaacatcacataattcaatataattatacgtgtcggtgtcg 150  Q
    |||||| ||||||||||  || ||||||||||||| | |||||||| ||||||||||||    
T  7265651 acaccgctaataatttgagaaaatcacataattcagtgtaattatatgtgtcggtgtcg 7265593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 152
Target Start/End: Complemental strand, 20371169 - 20371108
Alignment:
Q  91 gacaccgataataatttgtaaacatcacataattcaatataattatacgtgtcggtgtcgaa 152  Q
    ||||||| ||||||||||  || ||||||||| ||||| | |||||| ||||||||||||||    
T  20371169 gacaccgctaataatttgagaaaatcacataactcaatgtgattatatgtgtcggtgtcgaa 20371108  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 145
Target Start/End: Complemental strand, 30866202 - 30866149
Alignment:
Q  92 acaccgataataatttgtaaacatcacataattcaatataattatacgtgtcgg 145  Q
    |||||| ||||||||||  || ||||||||||||||| |||||||| |||||||    
T  30866202 acaccgctaataatttgagaaaatcacataattcaatgtaattatatgtgtcgg 30866149  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 150
Target Start/End: Complemental strand, 9025558 - 9025494
Alignment:
Q  86 acatagacaccgataataatttgtaaacatcacataattcaatataattatacgtgtcggtgtcg 150  Q
    |||| ||||| | ||||||||||  || ||||||||||||| | |||||||| ||||||||||||    
T  9025558 acatggacactgctaataatttgagaaaatcacataattcagtgtaattatatgtgtcggtgtcg 9025494  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 91 - 150
Target Start/End: Original strand, 7928450 - 7928509
Alignment:
Q  91 gacaccgataataatttgtaaacatcacataattcaatataattatacgtgtcggtgtcg 150  Q
    ||||||| |||||||||| ||| ||||||||||||| | |||||||| ||||||||||||    
T  7928450 gacaccgctaataatttgaaaaaatcacataattcagtgtaattatatgtgtcggtgtcg 7928509  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 149
Target Start/End: Original strand, 13807170 - 13807227
Alignment:
Q  92 acaccgataataatttgtaaacatcacataattcaatataattatacgtgtcggtgtc 149  Q
    |||| ||||| ||||||  || |||||||||||||||||||| ||| |||||||||||    
T  13807170 acactgataacaatttgagaaaatcacataattcaatataataatatgtgtcggtgtc 13807227  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 114 - 150
Target Start/End: Original strand, 35222961 - 35222997
Alignment:
Q  114 atcacataattcaatataattatacgtgtcggtgtcg 150  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  35222961 atcacataattcaatgtaattatatgtgtcggtgtcg 35222997  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 99 - 150
Target Start/End: Original strand, 37558985 - 37559036
Alignment:
Q  99 taataatttgtaaacatcacataattcaatataattatacgtgtcggtgtcg 150  Q
    |||||||||||||| ||||||||||||||| |||||| | ||||||||||||    
T  37558985 taataatttgtaaaaatcacataattcaatgtaattacaagtgtcggtgtcg 37559036  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 114 - 151
Target Start/End: Original strand, 38442330 - 38442367
Alignment:
Q  114 atcacataattcaatataattatacgtgtcggtgtcga 151  Q
    |||||||||||||||||||||||| |||||||||||||    
T  38442330 atcacataattcaatataattataagtgtcggtgtcga 38442367  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 92 - 152
Target Start/End: Original strand, 18570973 - 18571033
Alignment:
Q  92 acaccgataataatttgtaaacatcacataattcaatataattatacgtgtcggtgtcgaa 152  Q
    |||||||||||||||||  || || |||||||||||| |||| ||| ||||| ||||||||    
T  18570973 acaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgtcgaa 18571033  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 114 - 209
Target Start/End: Complemental strand, 20242763 - 20242668
Alignment:
Q  114 atcacataattcaatataattatacgtgtcggtgtcgaaaatcaacacgtgtctgatactaagacac-acttaatcgaagagtatccgtgcttcata 209  Q
    ||||||||||||| | |||||||| |||||||||||| | | |||||||||||||| || | |||||  ||||  |||||||| || ||||||||||    
T  20242763 atcacataattcagtgtaattatatgtgtcggtgtcggaca-caacacgtgtctgacacgaggacacgccttatccgaagagtgtctgtgcttcata 20242668  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 149
Target Start/End: Original strand, 19206050 - 19206108
Alignment:
Q  91 gacaccgataataatttgtaaacatcacataattcaatataattatacgtgtcggtgtc 149  Q
    ||||||| ||||||||||  || ||||||||||||| |||||||||| |||||||||||    
T  19206050 gacaccgctaataatttgagaaaatcacataattcattataattatatgtgtcggtgtc 19206108  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 150
Target Start/End: Complemental strand, 2525903 - 2525844
Alignment:
Q  91 gacaccgataataatttgtaaacatcacataattcaatataattatacgtgtcggtgtcg 150  Q
    ||||||||||||||||||   | || ||||||||||||||||| ||| ||||||||||||    
T  2525903 gacaccgataataatttgagcaaatgacataattcaatataatcatatgtgtcggtgtcg 2525844  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 150
Target Start/End: Original strand, 3991332 - 3991383
Alignment:
Q  99 taataatttgtaaacatcacataattcaatataattatacgtgtcggtgtcg 150  Q
    |||||||||| ||| ||||||||||||| |||||||| | ||||||||||||    
T  3991332 taataatttgaaaaaatcacataattcagtataattacaagtgtcggtgtcg 3991383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 149
Target Start/End: Original strand, 24146839 - 24146874
Alignment:
Q  114 atcacataattcaatataattatacgtgtcggtgtc 149  Q
    |||||||||||||||||||||||| |||||||||||    
T  24146839 atcacataattcaatataattatatgtgtcggtgtc 24146874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 149
Target Start/End: Original strand, 7438714 - 7438764
Alignment:
Q  99 taataatttgtaaacatcacataattcaatataattatacgtgtcggtgtc 149  Q
    |||||||||| ||| ||||||||||||||| |||||| | |||||||||||    
T  7438714 taataatttgaaaaaatcacataattcaatgtaattacaagtgtcggtgtc 7438764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 149
Target Start/End: Complemental strand, 42720949 - 42720891
Alignment:
Q  91 gacaccgataataatttgtaaacatcacataattcaatataattatacgtgtcggtgtc 149  Q
    ||||||| |||||||||| ||| ||||||||||| ||| |||||||| ||||| |||||    
T  42720949 gacaccgctaataatttgaaaaaatcacataattaaatgtaattatatgtgtcagtgtc 42720891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 9778510 - 9778559
Alignment:
Q  101 ataatttgtaaacatcacataattcaatataattatacgtgtcggtgtcg 150  Q
    |||||||| ||| ||||||||||||| |||||||| | ||||||||||||    
T  9778510 ataatttgaaaaaatcacataattcagtataattacaagtgtcggtgtcg 9778559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 147
Target Start/End: Complemental strand, 3520401 - 3520345
Alignment:
Q  91 gacaccgataataatttgtaaacatcacataattcaatataattatacgtgtcggtg 147  Q
    |||||||||||| |||||  || |||| |||||||||| |||||||| |||||||||    
T  3520401 gacaccgataatcatttgagaaaatcatataattcaatgtaattatatgtgtcggtg 3520345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 150
Target Start/End: Original strand, 11072298 - 11072355
Alignment:
Q  91 gacaccgataataatttgtaaacatcacataattcaatataattatacgtgtcggtgtcg 150  Q
    |||||||||||||||||| ||| |  | ||||||||||||||||||  ||||||||||||    
T  11072298 gacaccgataataatttgaaaaaaatatataattcaatataattat--gtgtcggtgtcg 11072355  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 48438560 - 48438604
Alignment:
Q  105 tttgtaaacatcacataattcaatataattatacgtgtcggtgtc 149  Q
    |||| ||| ||||||||||||||| |||||| |||||||||||||    
T  48438560 tttgaaaaaatcacataattcaatgtaattacacgtgtcggtgtc 48438604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 91 - 148
Target Start/End: Complemental strand, 38749622 - 38749565
Alignment:
Q  91 gacaccgataataatttgtaaacatcacataattcaatataattatacgtgtcggtgt 148  Q
    |||||||||||||||||| ||| || |||||||||||| |||||||| |||| |||||    
T  38749622 gacaccgataataatttgaaaaaatgacataattcaatgtaattatatgtgttggtgt 38749565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 150
Target Start/End: Complemental strand, 22423863 - 22423812
Alignment:
Q  99 taataatttgtaaacatcacataattcaatataattatacgtgtcggtgtcg 150  Q
    ||||||||||  || ||||||||||||||||||||||||  |||||||||||    
T  22423863 taataatttgagaaaatcacataattcaatataattatatatgtcggtgtcg 22423812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 150
Target Start/End: Complemental strand, 28588733 - 28588674
Alignment:
Q  91 gacaccgataataatttgtaaacatcacataattcaatataattatacgtgtcggtgtcg 150  Q
    ||||||| ||||||||||  || ||||||||||||| | |||||||| ||||||||||||    
T  28588733 gacaccggtaataatttgagaaaatcacataattcagtgtaattataggtgtcggtgtcg 28588674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 56 - 150
Target Start/End: Complemental strand, 13287493 - 13287399
Alignment:
Q  56 acggacactagacacaacacgaacaaaaacacatagacaccgataataatttgtaaacatcacataattcaatataattatacgtgtcggtgtcg 150  Q
    ||||||||  ||||| ||||| |||  ||||| | ||||| |||||||||||| ||| ||||||||||||| | ||| || | ||||||||||||    
T  13287493 acggacaccggacacgacacggacactaacacgtcgacacagataataatttgaaaaaatcacataattcagtgtaactacaagtgtcggtgtcg 13287399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 150
Target Start/End: Complemental strand, 1486760 - 1486709
Alignment:
Q  99 taataatttgtaaacatcacataattcaatataattatacgtgtcggtgtcg 150  Q
    |||||||||| ||| ||||||||||||| | |||||||| ||||||||||||    
T  1486760 taataatttgaaaaaatcacataattcagtgtaattataagtgtcggtgtcg 1486709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 142
Target Start/End: Complemental strand, 17425152 - 17425101
Alignment:
Q  91 gacaccgataataatttgtaaacatcacataattcaatataattatacgtgt 142  Q
    ||||||||||||||||||  || ||||||||||||||| |||||||| ||||    
T  17425152 gacaccgataataatttgataaaatcacataattcaatgtaattatatgtgt 17425101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 150
Target Start/End: Complemental strand, 38078712 - 38078661
Alignment:
Q  99 taataatttgtaaacatcacataattcaatataattatacgtgtcggtgtcg 150  Q
    |||||||||| ||| ||||||||||||||| |||||| | ||||||||||||    
T  38078712 taataatttgaaaaaatcacataattcaatgtaattacaagtgtcggtgtcg 38078661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 92 - 150
Target Start/End: Original strand, 6427351 - 6427409
Alignment:
Q  92 acaccgataataatttgtaaacatcacataattcaatataattatacgtgtcggtgtcg 150  Q
    |||||| ||||||||||  || ||||||||||||||| |||||||| |||| |||||||    
T  6427351 acaccgctaataatttgagaaaatcacataattcaatgtaattatatgtgttggtgtcg 6427409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 149
Target Start/End: Original strand, 36878461 - 36878519
Alignment:
Q  91 gacaccgataataatttgtaaacatcacataattcaatataattatacgtgtcggtgtc 149  Q
    ||||||| ||||||||||  || ||||||||||||| | |||||||| |||||||||||    
T  36878461 gacaccgctaataatttgagaaaatcacataattcagtgtaattataggtgtcggtgtc 36878519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 398824 - 398772
Alignment:
Q  91 gacaccgataataatttgtaaacatcacataattcaatataattatacgtgtc 143  Q
    ||||||| |||||||||| ||| ||||||||||||| | |||||||| |||||    
T  398824 gacaccgctaataatttgaaaaaatcacataattcagtgtaattataggtgtc 398772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 114 - 150
Target Start/End: Complemental strand, 29163417 - 29163381
Alignment:
Q  114 atcacataattcaatataattatacgtgtcggtgtcg 150  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  29163417 atcacataattcaatttaattatatgtgtcggtgtcg 29163381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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