View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3899_low_10 (Length: 292)

Name: NF3899_low_10
Description: NF3899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3899_low_10
NF3899_low_10
[»] chr2 (1 HSPs)
chr2 (17-292)||(43853842-43854138)


Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 17 - 292
Target Start/End: Original strand, 43853842 - 43854138
Alignment:
Q  17 agttatcacgtaccttaccttggatgatcgaaggatccatagagaatttagtaagacttggaagaattatgatacttttccctcttattgatgagtaaca 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43853842 agttatcacgtaccttaccttggatgatcgaaggatccatagagaatttagtaagacttggaagaattatgatacttttccctcttattgatgagtaaca 43853941  T
Q  117 tgtttaaatgactatattatataagctcatcagtgaaggcatgaatgaatctctcaagtctcaaaaggctaactaaaagaacaatc-------------- 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  
T  43853942 tgtttaaatgactatattatataagctcatcagtgaaggcatgaatgaatctctcaagtctcaaaaggctaactaaaagaacaatccaatacatcacgac 43854041  T
Q  203 -------caataaagtctaatataatatttcattactatatttcattaaggnnnnnnnnggtgaacaaaataattgaataaaagttatccacatatt 292  Q
           ||||||||||||||||||||||| ||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||    
T  43854042 cggttcacaataaagtctaatataatatttaattactatatttcattaaggttttttttggtgaacaaaataattgaataaaagttatccacatatt 43854138  T

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