View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3899_low_12 (Length: 268)
Name: NF3899_low_12
Description: NF3899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3899_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 120 - 265
Target Start/End: Complemental strand, 1654034 - 1653889
Alignment:
| Q |
120 |
caatctggaaattgcaagctgattaggaaaattgaacgactttcacatttcttcttaaacttgtttttgttattgtttgaattgagtaaaattactactc |
219 |
Q |
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| T |
1654034 |
caatctggaaattgcaagctgattaggaaaattgaacgactttcacatttcttcttaaacttgtttttgttattgtttgaattgagtaaaattactactc |
1653935 |
T |
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| Q |
220 |
actcaaactagtgaagaatgaattgggtccggattcttaaattcat |
265 |
Q |
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| T |
1653934 |
actcaaactagtgaagaatgaattgggtccggattcttaaattcat |
1653889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 1654149 - 1654085
Alignment:
| Q |
5 |
ataatgatagatctctgttctgttcatggatcttgttgttttgttctgacattttacttttctac |
69 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1654149 |
ataatgatagatctctgttctgttcatggatcttgttgttttgttctgacattttacttttctac |
1654085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 128 - 229
Target Start/End: Original strand, 21472481 - 21472585
Alignment:
| Q |
128 |
aaattgcaagctgattaggaaaattgaacgactttcacatttcttctt---aaacttgtttttgttattgtttgaattgagtaaaattactactcactca |
224 |
Q |
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||||||||| || ||||| || ||||| ||| ||||||||||||||| ||||||||||||||||||||| |||||| || ||||| |||||| ||| |
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| T |
21472481 |
aaattgcaaactaattagaaatgttgaaggacgttcacatttcttcttctcaaacttgtttttgttattgttagaattgggtcaaatttatactcattca |
21472580 |
T |
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| Q |
225 |
aacta |
229 |
Q |
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||||| |
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| T |
21472581 |
aacta |
21472585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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