View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3899_low_13 (Length: 250)
Name: NF3899_low_13
Description: NF3899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3899_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 43854228 - 43854466
Alignment:
| Q |
1 |
tccagaaattaatatataaaataaaagtacaatggtaatatcatattttatcttcttaatttaatttttaactaaatttatggtggaaatttgtcctatg |
100 |
Q |
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| T |
43854228 |
tccagaaattaatatataaaataaaagtacaatggtaatatcatattttatcttcttaatttaatttttaaataaatttatgg---aaatttgtcctatg |
43854324 |
T |
|
| Q |
101 |
tagttactcaacaattgcatgggtggcttcattgaaaaagggagttcaaccagatgtggcatatggctacaaagccacaactccaacaggaactgttttc |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43854325 |
tagttactcaacaattgcatgggtggcttcattaaaaaagggagttcaaccagatgtggcatatggctacaaagccacaactccaacaggaactgttttc |
43854424 |
T |
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| Q |
201 |
aatttcttcagtgctttaggtgatgttgcatttgcctatgct |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
43854425 |
aatttcttcagtgctttaggtgatgttgcatttgcctatgct |
43854466 |
T |
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