View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3899_low_15 (Length: 249)

Name: NF3899_low_15
Description: NF3899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3899_low_15
NF3899_low_15
[»] chr3 (1 HSPs)
chr3 (1-242)||(27736679-27736920)
[»] chr4 (1 HSPs)
chr4 (6-207)||(5811365-5811566)
[»] chr8 (5 HSPs)
chr8 (3-242)||(32627717-32627956)
chr8 (3-242)||(32703941-32704184)
chr8 (33-163)||(7297906-7298036)
chr8 (33-160)||(7293432-7293559)
chr8 (3-64)||(32709655-32709716)
[»] chr6 (3 HSPs)
chr6 (3-199)||(20115898-20116094)
chr6 (111-233)||(21943673-21943795)
chr6 (3-79)||(21943577-21943653)
[»] chr5 (1 HSPs)
chr5 (32-73)||(8029200-8029241)


Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 27736679 - 27736920
Alignment:
Q  1 acgaggaatgaacaaaatgcaaactattatctggaaaaattctgccataaaatgaaccaggaaccccatagaagtagcacgggcctattttagtttccat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27736679 acgaggaatgaacaaaatgcaaactattatctggaaaaattctgccataaaatgaaccaggaactccatagaagtagcacgggcctattttagtttccat 27736778  T
Q  101 ttcatcacgtagtttctctttgaaggtgtcaagggacttgaatacgttgttgaagtcatttcccggtagatcattcaaaaatactttatattcaggagac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  27736779 ttcatcacgtagtttctctttgaaggtgtcaagggacttgaatacgttgttgaagtcatttcccggtagatcattcaaaaatactttatattcaggagat 27736878  T
Q  201 ttatgatgatgcacttgacaaagtttttccacacctttgata 242  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  27736879 ttatgatgatgcacttgacaaagtttttccacacctttgata 27736920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 6 - 207
Target Start/End: Original strand, 5811365 - 5811566
Alignment:
Q  6 gaatgaacaaaatgcaaactattatctggaaaaattctgccataaaatgaaccaggaaccccatagaagtagcacgggcctattttagtttccatttcat 105  Q
    ||||| |||||||||||||| ||||||||||| || || | |||||| || |||||||| ||| |||||||||| || || |||| ||||||||||||||    
T  5811365 gaatgcacaaaatgcaaacttttatctggaaagatcctactataaaaggatccaggaacaccagagaagtagcaaggacccatttcagtttccatttcat 5811464  T
Q  106 cacgtagtttctctttgaaggtgtcaagggacttgaatacgttgttgaagtcatttcccggtagatcattcaaaaatactttatattcaggagacttatg 205  Q
     ||||||||| ||||||||||||||||||||| | ||||||| |||||| ||||||||||||||||| |||||||| ||||||||||| ||||| |||||    
T  5811465 tacgtagtttttctttgaaggtgtcaagggacataaatacgtcgttgaaatcatttcccggtagatcgttcaaaaagactttatattcgggagatttatg 5811564  T
Q  206 at 207  Q
    ||    
T  5811565 at 5811566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 3 - 242
Target Start/End: Original strand, 32627717 - 32627956
Alignment:
Q  3 gaggaatgaacaaaatgcaaactattatctggaaaaattctgccataaaatgaaccaggaaccccatagaagtagcacgggcctattttagtttccattt 102  Q
    ||||||||||||||||||||||| | |   ||||||||||| |||| ||| ||||||||||| ||  ||||| |||| || || |||| |||  ||||||    
T  32627717 gaggaatgaacaaaatgcaaactttgaagaggaaaaattctaccatgaaaggaaccaggaactcctgagaagaagcatggacccatttcagtccccattt 32627816  T
Q  103 catcacgtagtttctctttgaaggtgtcaagggacttgaatacgttgttgaagtcatttcccggtagatcattcaaaaatactttatattcaggagactt 202  Q
    ||||| ||||||| ||||||||  ||||||||||| | |||| | ||||||||||||||||||||||||| |||||| |||   ||||||| ||||| ||    
T  32627817 catcaagtagtttttctttgaaaatgtcaagggacgtaaatatggtgttgaagtcatttcccggtagatcgttcaaatatatcatatattcgggagattt 32627916  T
Q  203 atgatgatgcacttgacaaagtttttccacacctttgata 242  Q
    ||||| | |   | ||||||| ||||||||| ||||||||    
T  32627917 atgattaagttttcgacaaagcttttccacaactttgata 32627956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 3 - 242
Target Start/End: Original strand, 32703941 - 32704184
Alignment:
Q  3 gaggaatgaacaaaatgcaaactattatctggaaaaattctgccataaaatgaaccaggaaccccatagaagtagcacgggcctattttagtttccattt 102  Q
    ||||||||||||||||||||||| ||||  |||||||| |||||||| || ||||| ||||||||| |||||||||| ||  | ||||  ||||||||||    
T  32703941 gaggaatgaacaaaatgcaaacttttattaggaaaaatcctgccatagaaggaaccgggaaccccaaagaagtagcaaggtaccatttcggtttccattt 32704040  T
Q  103 catcacgtagtttctctttgaaggtgtcaagggacttgaatacgttgttgaagtcatttcccggtagatcattcaaaaatac----tttatattcaggag 198  Q
    || |  |||| || |||||||| ||||| |||||| | ||||| ||||||||||| || || |||||||| |||||||| ||    | ||||||||||||    
T  32704041 cagcctgtagattttctttgaacgtgtcgagggacctaaatacattgttgaagtcgttccctggtagatcgttcaaaaagaccttatatatattcaggag 32704140  T
Q  199 acttatgatgatgcacttgacaaagtttttccacacctttgata 242  Q
    | ||||||| | || || ||||||  ||||||||| | ||||||    
T  32704141 atttatgattaagctctcgacaaatcttttccacaaccttgata 32704184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 163
Target Start/End: Original strand, 7297906 - 7298036
Alignment:
Q  33 ggaaaaattctgccataaaatgaaccaggaaccccatagaagtagcacgggcctattttagtttccatttcatcacgtagtttctctttgaaggtgtcaa 132  Q
    ||||||| ||| | ||| || ||||||||||||||| | |||||||| |  |  ||||||||||  ||||||||  | ||||||||||| ||| ||||||    
T  7297906 ggaaaaactctactatagaaagaaccaggaaccccaaaaaagtagcaagaactcattttagttttgatttcatcttgcagtttctctttaaagttgtcaa 7298005  T
Q  133 gggacttgaatacgttgttgaagtcatttcc 163  Q
    | ||||| |||| ||||||||||||||||||    
T  7298006 gtgacttaaatatgttgttgaagtcatttcc 7298036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 160
Target Start/End: Original strand, 7293432 - 7293559
Alignment:
Q  33 ggaaaaattctgccataaaatgaaccaggaaccccatagaagtagcacgggcctattttagtttccatttcatcacgtagtttctctttgaaggtgtcaa 132  Q
    ||||||| |||  |||| || ||||||||||| ||| |||||||||| ||||  |||| |||||  ||||||||| ||||||| | ||| ||| | ||||    
T  7293432 ggaaaaactctatcatagaaagaaccaggaacaccaaagaagtagcaagggctcatttcagttttgatttcatcaagtagtttatgtttaaagctatcaa 7293531  T
Q  133 gggacttgaatacgttgttgaagtcatt 160  Q
    | ||||| || | |||||||||||||||    
T  7293532 gtgacttaaaaatgttgttgaagtcatt 7293559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 32709655 - 32709716
Alignment:
Q  3 gaggaatgaacaaaatgcaaactattatctggaaaaattctgccataaaatgaaccaggaac 64  Q
    |||||||| |||||||||||||| | ||  |||||||| |||||||| || |||||||||||    
T  32709655 gaggaatggacaaaatgcaaactttgattaggaaaaatcctgccatagaaagaaccaggaac 32709716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 3 - 199
Target Start/End: Complemental strand, 20116094 - 20115898
Alignment:
Q  3 gaggaatgaacaaaatgcaaactattatctggaaaaattctgccataaaatgaaccaggaaccccatagaagtagcacgggcctattttagtttccattt 102  Q
    ||||||||||| ||||| ||||| | ||  || ||||||||||||||||| ||||| ||||| ||| |||||||||| || || |||||| |||||| ||    
T  20116094 gaggaatgaactaaatgtaaactctcattagggaaaattctgccataaaaggaaccgggaacaccagagaagtagcaaggacccattttattttccaatt 20115995  T
Q  103 catcacgtagtttctctttgaaggtgtcaagggacttgaatacgttgttgaagtcatttcccggtagatcattcaaaaatactttatattcaggaga 199  Q
    ||| |   || || ||||||||||||||||||||||| |||| |  ||||||||| ||||| | |||||| |||||| | || | ||||||||||||    
T  20115994 cattagaaagcttttctttgaaggtgtcaagggacttaaatatgccgttgaagtcgtttccggatagatcgttcaaagagacatcatattcaggaga 20115898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 111 - 233
Target Start/End: Original strand, 21943673 - 21943795
Alignment:
Q  111 agtttctctttgaaggtgtcaagggacttgaatacgttgttgaagtcatttcccggtagatcattcaaaaatactttatattcaggagacttatgatgat 210  Q
    ||||| ||||||||||| ||||||||| | |||||||||||||| || ||||| |||||||| ||||||||||| |||||||| ||||| | |||||       
T  21943673 agtttttctttgaaggtctcaagggacctaaatacgttgttgaaatcgtttccgggtagatcgttcaaaaataccttatattcgggagattcatgattca 21943772  T
Q  211 gcacttgacaaagtttttccaca 233  Q
     | |||||||||| |||||||||    
T  21943773 actcttgacaaagcttttccaca 21943795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 21943577 - 21943653
Alignment:
Q  3 gaggaatgaacaaaatgcaaactattatctggaaaaattctgccataaaatgaaccaggaaccccatagaagtagca 79  Q
    |||| ||||| |||||||||||| |  |  |||||||||||||||||||| ||||| ||||| ||| ||||||||||    
T  21943577 gaggcatgaataaaatgcaaactttggtaaggaaaaattctgccataaaaggaaccgggaacaccaaagaagtagca 21943653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 8029241 - 8029200
Alignment:
Q  32 tggaaaaattctgccataaaatgaaccaggaaccccatagaa 73  Q
    ||||||||| ||||||||||| ||||||||| ||||||||||    
T  8029241 tggaaaaatcctgccataaaaagaaccaggagccccatagaa 8029200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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