View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3899_low_18 (Length: 218)
Name: NF3899_low_18
Description: NF3899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3899_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 116; Significance: 4e-59; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 16 - 167
Target Start/End: Complemental strand, 10383877 - 10383726
Alignment:
| Q |
16 |
atgaagattgttctacaagattggatccggtttcgaaatggcgcgcagaagaacaatgcaacagaaatagtggctttgaggtggccacaaaagtgcatag |
115 |
Q |
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| T |
10383877 |
atgaagattgttctacaagattggatccggtttcgaaatggcgtgcagaagaacaatgcaacagaaaaagtggctttgaggtggccacagaagtgcattg |
10383778 |
T |
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| Q |
116 |
gatgaagatacggttctcaagttttcccagataattcatattaagaaaaaca |
167 |
Q |
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| T |
10383777 |
gatgaagatacagctctcaagttttcacagagaattcatattaagataaaca |
10383726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 10380691 - 10380582
Alignment:
| Q |
16 |
atgaagattgttctacaagattggatccggtttcgaaatggcgcgcagaagaacaatgcaacagaaatagtggctttgaggtggccacaaaagtgcatag |
115 |
Q |
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| T |
10380691 |
atgacgattgttctagatgattggatccgctttagaaaacgtgtgaaaaacaacaatgcaacagaaaaaatgactttgaggtggccacagaagtgcatag |
10380592 |
T |
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| Q |
116 |
gatgaagata |
125 |
Q |
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| T |
10380591 |
gatgaagata |
10380582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 189
Target Start/End: Complemental strand, 10380557 - 10380502
Alignment:
| Q |
134 |
aagttttcccagataattcatattaagaaaaacagattacagatttctctttatct |
189 |
Q |
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| T |
10380557 |
aagttttcacagacaattcatgttaagaaaaacagcttgcagatttctttttatct |
10380502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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