View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3899_low_2 (Length: 563)
Name: NF3899_low_2
Description: NF3899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3899_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 18 - 553
Target Start/End: Original strand, 20131006 - 20131541
Alignment:
| Q |
18 |
gaaggaagcattccttcaagtttaggaaactgtagtaaacttcaagcacttgatttgtctaaaaattcactcactggtagcattccttcaggactgtttc |
117 |
Q |
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| T |
20131006 |
gaaggaagcattccttcaagtttaggaaactgtagtaaacttcaagcacttgatttgtctagaaattcactcactggtagcattccttcaggactatttc |
20131105 |
T |
|
| Q |
118 |
agcttcaaaacctcacaaaactgcttttgatttcaaatgatatatcaggttctataccatcagaaataggtagttgtaaatctcttataaggttgaggct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
20131106 |
agcttcaaaacctcacaaaactgcttttgatttcaaatgatatatcaggttctataccatcagaaataggtagttgcaaatctcttataaggttgaggct |
20131205 |
T |
|
| Q |
218 |
tggaaacaataggattactggaagcattcctaagacaataggaaatctcaggaatttgaactttttagatctctctgggaaccgtctttcagggccggtt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
20131206 |
tggaaacaataggattactggaagcattcctaagacaataggaaatctcaggaatttgaactttttagatctctctgggaaccgtctttcagcgccggtt |
20131305 |
T |
|
| Q |
318 |
cccgatgaaataagaagctgcatacaacttcaaatgatagacttcagctctaacaacttagaaggctcgcttcctaattccttgtcatcgttatcttcac |
417 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
20131306 |
cccgatgaaataagaagctgcgtacaacttcaaatgatagacttcagctctaacaacttagaaggctcgcttcctaattccttgtcatcattatcttcac |
20131405 |
T |
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| Q |
418 |
ttcaggtattggatgcatcttttaacaagttttcaggtccgttgccggcaggtttaggtcgtcttgtttcattaagtaagttaatctttggaaataactt |
517 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20131406 |
ttcaggtattggatgcatcgtttaacaagttttcaggtccgttgccggcaagtttaggtcgtcttgtttcattaagtaagttaatctttggaaataactt |
20131505 |
T |
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| Q |
518 |
gttttctggaccaattcctgaatcactaagcctatg |
553 |
Q |
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|||||||||||||||||||| ||||||||||||||| |
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| T |
20131506 |
gttttctggaccaattcctgcatcactaagcctatg |
20131541 |
T |
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