View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3899_low_4 (Length: 387)
Name: NF3899_low_4
Description: NF3899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3899_low_4 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 103; Significance: 4e-51; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 177 - 387
Target Start/End: Original strand, 50140329 - 50140539
Alignment:
| Q |
177 |
gatagaaagatgaccacctatttaagcattgtagtttggtnnnnnnnnntaaagactaaattacataatcgatcccttaactagttatgagctttcatat |
276 |
Q |
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| T |
50140329 |
gatagaaagatgaccacctatttaagtattgtagtttggtaaaaaaaaataaagactaaattacataatcgatctcttaattagttatgagctttcatat |
50140428 |
T |
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| Q |
277 |
tggttccgtaattaattttcattatgcattgaaattggttatttggaaggnnnnnnnnnnnnnnngtgtactcacttatctctaaactatactatgagtc |
376 |
Q |
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| T |
50140429 |
tggtcccataattaattttcgttatgtattgggattggttatttggaaggaaaaaaaatcaaaaagtgtactcacttatctctaaactatactatgagtc |
50140528 |
T |
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| Q |
377 |
atatccaacac |
387 |
Q |
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| T |
50140529 |
atatccaacac |
50140539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 107 - 153
Target Start/End: Original strand, 50140224 - 50140270
Alignment:
| Q |
107 |
aaatgagtttatctcatagaaactctaatgaccacttattgaacttg |
153 |
Q |
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| T |
50140224 |
aaatgagtttatctcagagaaactctaatgaccacttattgaacttg |
50140270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 296
Target Start/End: Complemental strand, 18852987 - 18852917
Alignment:
| Q |
226 |
taaagactaaattacataatcgatcccttaactagttatgagctttcatattggttccgtaattaattttc |
296 |
Q |
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| T |
18852987 |
taaaggcttaattacataaatgatcccttaactaattatgaaatttcatattggccctgtaattaattttc |
18852917 |
T |
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