View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3900_high_11 (Length: 250)

Name: NF3900_high_11
Description: NF3900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3900_high_11
NF3900_high_11
[»] chr5 (2 HSPs)
chr5 (108-200)||(35403053-35403145)
chr5 (112-200)||(32380455-32380543)
[»] chr7 (3 HSPs)
chr7 (108-200)||(21439719-21439811)
chr7 (123-200)||(12171116-12171192)
chr7 (137-200)||(33999629-33999692)
[»] chr4 (4 HSPs)
chr4 (108-200)||(13215974-13216066)
chr4 (136-181)||(22592678-22592723)
chr4 (108-181)||(9470019-9470093)
chr4 (122-174)||(31938970-31939022)
[»] chr8 (2 HSPs)
chr8 (108-200)||(11708789-11708879)
chr8 (124-200)||(12633561-12633637)
[»] chr6 (1 HSPs)
chr6 (108-200)||(32525011-32525103)
[»] chr2 (1 HSPs)
chr2 (133-200)||(11257056-11257123)
[»] chr3 (2 HSPs)
chr3 (132-181)||(50497383-50497432)
chr3 (129-157)||(37653102-37653130)
[»] chr1 (2 HSPs)
chr1 (146-200)||(26755334-26755389)
chr1 (136-181)||(29361532-29361577)


Alignment Details
Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 108 - 200
Target Start/End: Original strand, 35403053 - 35403145
Alignment:
Q  108 ggcactggttaaaggtcaaacatagtagtattttgtattgaaagttgtgttgtcattacattaaaagctaaaaaggtgttctttttgacttaa 200  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||    
T  35403053 ggcactggttaagggtcaaatatagtagtattttgtattgaaagttgtgttgtcattacattaaaagtttaaaaagtgttctttttgacttaa 35403145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 112 - 200
Target Start/End: Original strand, 32380455 - 32380543
Alignment:
Q  112 ctggttaaaggtcaaacatagtagtattttgtattgaaagttgtgttgtcattacattaaaagctaaaaaggtgttctttttgacttaa 200  Q
    |||||||| ||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||    
T  32380455 ctggttaagggtcaaatatagtagtattttgtattgaaaattatgttgtcattacattaaaagctaaaaaagtgttctttttgacttaa 32380543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 108 - 200
Target Start/End: Complemental strand, 21439811 - 21439719
Alignment:
Q  108 ggcactggttaaaggtcaaacatagtagtattttgtattgaaagttgtgttgtcattacattaaaagctaaaaaggtgttctttttgacttaa 200  Q
    ||||||||||||  |||||| |||||||||||||||||||||||||||| ||||||| ||||||||| | |||| ||||||||||||||||||    
T  21439811 ggcactggttaagagtcaaatatagtagtattttgtattgaaagttgtgctgtcattgcattaaaagtttaaaaagtgttctttttgacttaa 21439719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 123 - 200
Target Start/End: Original strand, 12171116 - 12171192
Alignment:
Q  123 tcaaacatagtagtattttgtattgaaagttgtgttgtcattacattaaaagctaaaaaggtgttctttttgacttaa 200  Q
    ||||| |||||||| |||| |||| |||||||||||||||||||| |||||| | |||| ||||||||||||||||||    
T  12171116 tcaaatatagtagtgttttatattaaaagttgtgttgtcattaca-taaaagtttaaaaagtgttctttttgacttaa 12171192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 200
Target Start/End: Complemental strand, 33999692 - 33999629
Alignment:
Q  137 attttgtattgaaagttgtgttgtcattacattaaaagctaaaaaggtgttctttttgacttaa 200  Q
    |||||||||||||||||||| ||||||| | ||||||||| ||||  |||||||| ||||||||    
T  33999692 attttgtattgaaagttgtgctgtcattgcgttaaaagcttaaaaaatgttctttgtgacttaa 33999629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 108 - 200
Target Start/End: Complemental strand, 13216066 - 13215974
Alignment:
Q  108 ggcactggttaaaggtcaaacatagtagtattttgtattgaaagttgtgttgtcattacattaaaagctaaaaaggtgttctttttgacttaa 200  Q
    ||||||||||||  |||||| |||||||||||||||||||||||||||| |||||||  |||||||||| |||| || |||||||||||||||    
T  13216066 ggcactggttaagagtcaaatatagtagtattttgtattgaaagttgtgctgtcattgtattaaaagcttaaaaagtattctttttgacttaa 13215974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 22592723 - 22592678
Alignment:
Q  136 tattttgtattgaaagttgtgttgtcattacattaaaagctaaaaa 181  Q
    |||||||||| |||||||||||||||||| ||||||||||| ||||    
T  22592723 tattttgtatcgaaagttgtgttgtcattgcattaaaagcttaaaa 22592678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 181
Target Start/End: Original strand, 9470019 - 9470093
Alignment:
Q  108 ggcactggttaa-aggtcaaacatagtagtattttgtattgaaagttgtgttgtcattacattaaaagctaaaaa 181  Q
    |||||||||||| | | |||| ||| || ||||||||||||||||||||| | ||||| ||||||||||| ||||    
T  9470019 ggcactggttaagaagacaaatataatattattttgtattgaaagttgtgctctcattgcattaaaagcttaaaa 9470093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 174
Target Start/End: Complemental strand, 31939022 - 31938970
Alignment:
Q  122 gtcaaacatagtagtattttgtattgaaagttgtgttgtcattacattaaaag 174  Q
    |||||| |||||||||||||| ||| ||||||||||  ||| |||||||||||    
T  31939022 gtcaaaaatagtagtattttgcattaaaagttgtgtaatcaatacattaaaag 31938970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 108 - 200
Target Start/End: Original strand, 11708789 - 11708879
Alignment:
Q  108 ggcactggttaaaggtcaaacatagtagtattttgtattgaaagttgtgttgtcattacattaaaagctaaaaaggtgttctttttgacttaa 200  Q
    ||||||||||||  |||||| ||||||||| |||||||||||||||||||||||||| ||||||| ||| |||| ||||  ||||||||||||    
T  11708789 ggcactggttaagagtcaaatatagtagtactttgtattgaaagttgtgttgtcattgcattaaaggcttaaaaagtgt--tttttgacttaa 11708879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 200
Target Start/End: Complemental strand, 12633637 - 12633561
Alignment:
Q  124 caaacatagtagtattttgtattgaaagttgtgttgtcattacattaaaagctaaaaaggtgttctttttgacttaa 200  Q
    |||| |||||| ||||||||||||||||||||| ||||||  ||||||||| | |||| |||| | |||| ||||||    
T  12633637 caaatatagtattattttgtattgaaagttgtgctgtcatagcattaaaagtttaaaaagtgtcccttttaacttaa 12633561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 108 - 200
Target Start/End: Original strand, 32525011 - 32525103
Alignment:
Q  108 ggcactggttaaaggtcaaacatagtagtattttgtattgaaagttgtgttgtcattacattaaaagctaaaaaggtgttctttttgacttaa 200  Q
    |||||||  ||| ||||||| |||||||||||||||||||||||||||| ||||||| ||||||||  | ||||  |||||||||| ||||||    
T  32525011 ggcactgactaagggtcaaatatagtagtattttgtattgaaagttgtgctgtcattgcattaaaaatttaaaaattgttctttttaacttaa 32525103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 133 - 200
Target Start/End: Original strand, 11257056 - 11257123
Alignment:
Q  133 tagtattttgtattgaaagttgtgttgtcattacattaaaagctaaaaaggtgttctttttgacttaa 200  Q
    ||||||||||||||||||||| || ||||||| ||||||||||| |||| |||||  |||||||||||    
T  11257056 tagtattttgtattgaaagttatgatgtcattgcattaaaagcttaaaaagtgttacttttgacttaa 11257123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 50497432 - 50497383
Alignment:
Q  132 gtagtattttgtattgaaagttgtgttgtcattacattaaaagctaaaaa 181  Q
    ||||||||||| |||||||||||||| | |||||||||||||||| ||||    
T  50497432 gtagtattttgcattgaaagttgtgtagccattacattaaaagcttaaaa 50497383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 157
Target Start/End: Original strand, 37653102 - 37653130
Alignment:
Q  129 atagtagtattttgtattgaaagttgtgt 157  Q
    |||||||||||||||||||||||||||||    
T  37653102 atagtagtattttgtattgaaagttgtgt 37653130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 26755334 - 26755389
Alignment:
Q  146 tgaaagttgtgttgtcattacattaaaagc-taaaaaggtgttctttttgacttaa 200  Q
    ||||||||||||||| ||| |||||||||| |||||| ||||||||||| ||||||    
T  26755334 tgaaagttgtgttgttattgcattaaaagcttaaaaaagtgttcttttttacttaa 26755389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 29361532 - 29361577
Alignment:
Q  136 tattttgtattgaaagttgtgttgtcattacattaaaagctaaaaa 181  Q
    ||||||||||||||||||||| ||| ||| ||||||||||| ||||    
T  29361532 tattttgtattgaaagttgtgctgttattgcattaaaagcttaaaa 29361577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University