View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3900_high_12 (Length: 249)
Name: NF3900_high_12
Description: NF3900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3900_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 11 - 233
Target Start/End: Original strand, 38846547 - 38846769
Alignment:
| Q |
11 |
gagcacagacaatggcacataaaatggctgctacaagaaccatccaatcaaaaccagctacttgttcatgatcatggtgcttgttgtcacatggtatggg |
110 |
Q |
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| T |
38846547 |
gagcacaaacaatggcacataaaatggctgctacaagaaccatccaatcaaaaccagctacttgttcatgatcatggtgcttgttgtcacatggtatggg |
38846646 |
T |
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| Q |
111 |
agattgagagtgagaatgagaattattttcagccatatggagatggaaaagtaatgaataataatgggaatttggaacatataaagaagaaagtgggaaa |
210 |
Q |
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| T |
38846647 |
agattgagagtgagaatgagaattattttcagccatatggagatggaaaagtaatgaataataatgggaatttggaacatattaagaagaaagtgggaaa |
38846746 |
T |
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| Q |
211 |
cattgagagggtgacacatatat |
233 |
Q |
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| T |
38846747 |
cattgagagggtgacacatatat |
38846769 |
T |
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