View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3900_high_13 (Length: 247)
Name: NF3900_high_13
Description: NF3900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3900_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 2670464 - 2670691
Alignment:
| Q |
1 |
atttgagaaatttctcagatgggtgtgtgagaaaaacagaattggaatgtgacaaagataagttcttgcatttgaagaatgtgcaattgccagaaactag |
100 |
Q |
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| T |
2670464 |
atttgagaaatttctcagatgggtgtgtgagaaaaacagaattggaatgtgacaaagataagttcttgcatttgaagaatgtgcaattgccagaaactag |
2670563 |
T |
|
| Q |
101 |
aagtgtgtttgtgaacaagagtatgacattgttggaatgtgaaaacaagtgccttaaagattgttcttgcactgcttatgctaatgaagagataactaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2670564 |
aagtgtgtttgtgaacaagagtatgacattgttggaatgtgaaaacaagtgccttaaagattgttcttgcactgcttatgctaatgaagagataactaat |
2670663 |
T |
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| Q |
201 |
ggtgggacaggctgtgttatgtggaatt |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
2670664 |
ggtgggacaggctgtgttatgtggaatt |
2670691 |
T |
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