View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3900_high_14 (Length: 239)
Name: NF3900_high_14
Description: NF3900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3900_high_14 |
 | |
|
| [»] chr4 (7 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 22 - 239
Target Start/End: Original strand, 38225921 - 38226138
Alignment:
| Q |
22 |
ccatttccgtaacttggtattgaggaacatataactctgccatcctgaaaacatgatccacatatttcgcaaaacaagctattaatctattataccatat |
121 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38225921 |
ccatttccgtaacttggtatagaggaacatataactctgccatcctgaaaacatgatccacatatttcgcaaaacaagctattaatctattataccatat |
38226020 |
T |
|
| Q |
122 |
ttaacttcctaaacaagctactatacacctttttcttgttaataaaagcatttgttagcctcaattgaaaactatcacatgatcaaatataagtgattat |
221 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
38226021 |
ttaacttcttaaacaagctactatacacctttttcttgttaataaaagcatttgttagcctcaattgaaaactatcacatgatcaaatagaagtgattat |
38226120 |
T |
|
| Q |
222 |
atttaatcacaaatgtgt |
239 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
38226121 |
atttaatcacaaatgtgt |
38226138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 22 - 137
Target Start/End: Original strand, 38242540 - 38242655
Alignment:
| Q |
22 |
ccatttccgtaacttggtattgaggaacatataactctgccatcctgaaaacatgatccacatatttcgcaaaacaagctattaatctattataccatat |
121 |
Q |
| |
|
|||||||| ||||||||| | || ||||||||||| || ||||||||||||||| ||||| ||||| ||||||||| |||| |||||||||||||| | |
|
|
| T |
38242540 |
ccatttccataacttggtttggaagaacatataaccctcccatcctgaaaacataatccatcaatttcacaaaacaagttattgatctattataccatgt |
38242639 |
T |
|
| Q |
122 |
ttaacttcctaaacaa |
137 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
38242640 |
ttaacttcttaaacaa |
38242655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 100
Target Start/End: Original strand, 38237340 - 38237418
Alignment:
| Q |
22 |
ccatttccgtaacttggtattgaggaacatataactctgccatcctgaaaacatgatccacatatttcgcaaaacaagc |
100 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||| || ||||||||||||||| ||||||| ||||| |||||||||| |
|
|
| T |
38237340 |
ccatttccataacttggtatagaggaacatataacccttccatcctgaaaacataatccacaaatttcacaaaacaagc |
38237418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 38252836 - 38252913
Alignment:
| Q |
25 |
tttccgtaacttggtattgaggaacatataactctgccatcctgaaaacatgatccacatatttcgcaaaacaagcta |
102 |
Q |
| |
|
||||||||| ||||||| || ||||||||||| || ||||||||||||||| ||||||| ||||| |||||||||||| |
|
|
| T |
38252836 |
tttccgtaatttggtatagaagaacatataaccctcccatcctgaaaacataatccacaaatttcacaaaacaagcta |
38252913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 38213440 - 38213514
Alignment:
| Q |
26 |
ttccgtaacttggtattgaggaacatataactctgccatcctgaaaacatgatccacatatttcgcaaaacaagc |
100 |
Q |
| |
|
|||| ||||||||||| || ||||||||||| || ||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
38213440 |
ttccataacttggtatagaagaacatataacccttccatcctgaaaacataatccacatatttcagaaaacaagc |
38213514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 96
Target Start/End: Original strand, 38247806 - 38247876
Alignment:
| Q |
26 |
ttccgtaacttggtattgaggaacatataactctgccatcctgaaaacatgatccacatatttcgcaaaac |
96 |
Q |
| |
|
|||| ||||||||||| || ||||||||||| || ||||||||||||||| ||||||| || || |||||| |
|
|
| T |
38247806 |
ttccataacttggtatagaagaacatataaccctcccatcctgaaaacataatccacaaatatcacaaaac |
38247876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 38253011 - 38253064
Alignment:
| Q |
170 |
catttgttagcctcaattgaaaactatcacatgatcaaatataagtgattatat |
223 |
Q |
| |
|
||||||||| |||| || ||||||||| ||||||||||||| | |||||||||| |
|
|
| T |
38253011 |
catttgttaccctctatcgaaaactattacatgatcaaatagaggtgattatat |
38253064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 101
Target Start/End: Original strand, 17453748 - 17453827
Alignment:
| Q |
22 |
ccatttccgtaacttggtattgaggaacatataactctgccatcctgaaaacatgatccacatatttcgcaaaacaagct |
101 |
Q |
| |
|
|||| ||| |||||||||| || |||||||||||||| ||||||||||||||| ||||||| ||||| ||||||||||| |
|
|
| T |
17453748 |
ccatgtccataacttggtacagaagaacatataactctcccatcctgaaaacataatccacaaatttcacaaaacaagct |
17453827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 17432850 - 17432916
Alignment:
| Q |
22 |
ccatttccgtaacttggtattgaggaacatataactctgccatcctgaaaacatgatccacatattt |
88 |
Q |
| |
|
||||| || ||||||||| | || ||||||||||| || ||||||||||||||| ||||||| |||| |
|
|
| T |
17432850 |
ccattgccataacttggtgtagaagaacatataaccctcccatcctgaaaacataatccacaaattt |
17432916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 200
Target Start/End: Original strand, 17432987 - 17433035
Alignment:
| Q |
152 |
ttttcttgttaataaaagcatttgttagcctcaattgaaaactatcaca |
200 |
Q |
| |
|
||||||||||||| ||| ||||| ||| |||||||||||||| |||||| |
|
|
| T |
17432987 |
ttttcttgttaattaaaacatttcttaccctcaattgaaaaccatcaca |
17433035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University