View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3900_high_4 (Length: 394)
Name: NF3900_high_4
Description: NF3900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3900_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 13 - 140
Target Start/End: Complemental strand, 45672841 - 45672714
Alignment:
| Q |
13 |
gagattgaaaatcaaaggatgactcatattactgttgaacgcaatcgaagaaaacaaatgaatgaatacttgaatgtgcttcgatctttgatgccttctt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
45672841 |
gagattgaaaatcaaaggatgactcatattactgttgaacgcaatcgaagaaaacaaatgaatgagtacttgaatgtgcttcgatctttgatgccttctt |
45672742 |
T |
|
| Q |
113 |
cttatgttcaaagggtcagtttcaatca |
140 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
45672741 |
cttatgttcaaagggtcagtttcaatca |
45672714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 205 - 380
Target Start/End: Complemental strand, 45672649 - 45672453
Alignment:
| Q |
205 |
gagcatgacataacatgatatgacatgagatgagttctcaactaatcacattttcannnnnnnaaatttacttaattatggcccgttaactttctaatta |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45672649 |
gagcatgacataacatgatatgacatgagatgagttctcaactaatcacattttcatttttttaaatttacttaattatggcccgttaactttctaatta |
45672550 |
T |
|
| Q |
305 |
c---------------------attttcattttgaatgtatgtgggtaggttaaatgatatttatttgtttatagtttgttttacttatgatagagg |
380 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45672549 |
cattttcatttttttcccttcaattttcattttgaatgtatgtgggtaggttaaatgatatttatttgtttatagtttgttttacttatgatagagg |
45672453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 128
Target Start/End: Complemental strand, 27300980 - 27300880
Alignment:
| Q |
28 |
aggatgactcatattactgttgaacgcaatcgaagaaaacaaatgaatgaatacttgaatgtgcttcgatctttgatgccttcttcttatgttcaaaggg |
127 |
Q |
| |
|
||||||||||| ||| | ||||| ||||||||||||||||| |||||||| ||| | || | || ||| ||||||||| |||||||||| ||||||| |
|
|
| T |
27300980 |
aggatgactcacattgcagttgagcgcaatcgaagaaaacagatgaatgagtaccttgatatcctcaaatccttgatgcctccttcttatgtacaaaggg |
27300881 |
T |
|
| Q |
128 |
t |
128 |
Q |
| |
|
| |
|
|
| T |
27300880 |
t |
27300880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University