View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3900_high_5 (Length: 388)
Name: NF3900_high_5
Description: NF3900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3900_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 10 - 369
Target Start/End: Complemental strand, 44041889 - 44041530
Alignment:
| Q |
10 |
gacatcatcatcactagaatctaagcccaaatcagatatctgacctgagcaatattccatattgcaagagataaagaggcagtggctaggaagagacccc |
109 |
Q |
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| T |
44041889 |
gacatcatcatcactagaatctaagcccaaatcagatatctcacctgagcaatattccatattgcaagagataaagaggcagtggctaggaagagacccc |
44041790 |
T |
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| Q |
110 |
caatgacccagttactggtttctgctaatagagaccagaatggttgcgatgtagagggttgagtttgaatgctactaatgggagcacccttgtaaaaggt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44041789 |
caatgacccagttactggtttctgctaatagagaccagaatggttgcgatgtagagggttgagtttgaatgctactaatgggagcacccttgtaaaaggt |
44041690 |
T |
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| Q |
210 |
cactattaaagctcctgagatagacaccacagtccccacaattttgatctggcttattgagcttccagcatccaacttctccatcctacaatggtttttg |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
44041689 |
cactattaaagctcctgagatagacaccacagtccccacaattttgatctggcttattgagcttccagcatccaacttctccatcctacaacggtttttg |
44041590 |
T |
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| Q |
310 |
aaatagtaaaataatccaactgttatgcataattataagtttgcataagaacctctaaac |
369 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44041589 |
aaatagtaaaataatccaactgttatgcataattataagtttgcataagaacctctaaac |
44041530 |
T |
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