View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3900_high_6 (Length: 367)
Name: NF3900_high_6
Description: NF3900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3900_high_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 18 - 363
Target Start/End: Complemental strand, 52365478 - 52365129
Alignment:
| Q |
18 |
gccttttcacttcttcaacagtcttccctcccacagctctagtcaccttctgccaaagatcaggagtgtccttgtccaacattgccaacgcattctcaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52365478 |
gccttttcacttcttcaacagtcttccctcccacagctctagccaccttctgccaaagatcaggagtgtccttgtccaacattgccaacgcattctcaaa |
52365379 |
T |
|
| Q |
118 |
tcttttgttctgctttgttgtccaattcgaacttgaagccattaattgtagtagcaactaacaacaatactatgtatgatgtttaatgaaggatagtgtc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52365378 |
tcttttgttctgctttgttgtccaattcgaacttgaagccattaattgtagtagcaactaacaacaatactatgtatgatgtttaatgaaggatagtgtc |
52365279 |
T |
|
| Q |
218 |
attgctagctgccctttatatagtaatgtagtagttggcctatacatgaataactcatatggactgtgatatgtcactcacatgcagact---tcaataa |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
52365278 |
attgctagctgccctttatatagtaatgtaggagttggcctatacatgaataactcatatggactatgatatgtcactcacatgcagacttgatcaataa |
52365179 |
T |
|
| Q |
315 |
taatttcagaaaactata-aagaatatatcgcatgtgttggtgtcctgtt |
363 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
52365178 |
taatttcagaaaactatataagaatatatcgcatgtgttggtgtcctgtt |
52365129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 7023349 - 7023225
Alignment:
| Q |
18 |
gccttttcacttcttcaacagtcttccctcccacagctctagtcaccttctgccaaagatcaggagtgtccttgtccaacattgccaacgcattctcaaa |
117 |
Q |
| |
|
||||||||||||| ||||| ||||||||||| ||||| || | | ||||||||| ||| || ||||||||||| | || ||||| ||||||||||| |
|
|
| T |
7023349 |
gccttttcacttcctcaactgtcttccctccaacagcccttgctagcttctgccacctatctggggtgtccttgtcatagatggccaaagcattctcaaa |
7023250 |
T |
|
| Q |
118 |
tcttttgttctgctttgttgtccaa |
142 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
7023249 |
tcttttgttctgctttgttgtccaa |
7023225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University