View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3900_low_1 (Length: 598)
Name: NF3900_low_1
Description: NF3900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3900_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 17 - 588
Target Start/End: Complemental strand, 29420742 - 29420189
Alignment:
| Q |
17 |
aggttttcctttttattattcgatttagaatcaaggaagatgctaccccgttgttagattcctcctaaattctacttagcagcaaattattattctatat |
116 |
Q |
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| T |
29420742 |
aggttttcctttttattattcgatttagaatcaaggaagatgctaccccgttgttagattcctcctaaattctacttagcagcaaattattattctatat |
29420643 |
T |
|
| Q |
117 |
atagaatgtatttttctcttcaacgtgatgctgataagacggaagcaagaaaacgaggaaataataaattagctcgtgacatgcattagaataaatcnnn |
216 |
Q |
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| T |
29420642 |
atagaatgtatttttctcttcaacgtgatgctgataagacgtaagcaagaaaacgaggaaataataaattagctcgtgacatgcattagaataaatcaaa |
29420543 |
T |
|
| Q |
217 |
nnnngggtgtgtttggaagaagaaaataagcactatgtagtgacttactgttttagtcccaaaaaagggtagggacttaatgagagcaaccaaaattcaa |
316 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29420542 |
aaaagggtgt--ttggaagaagaaaataagcactatgtagtgacttactgttttagtcccaaaaaagggtagggacttaatgagagcaaccaaaattcaa |
29420445 |
T |
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| Q |
317 |
gaataaatcaaatgatttcacaaatgtatctagacaccatatccaaatgatgcactcctaagtcatccactctgtaacctggtaatctttcttttgactg |
416 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
29420444 |
gaataaatcaaatgatttcacaaatctatctagacaccatatccaaatgatgcactcctaagtcatccactctgtaacccagtaatctttcttttgactg |
29420345 |
T |
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| Q |
417 |
gttctgtacccagtaatcatgttttgttcttataaatttgcttaatccatgatgaaaatattcactttccttgacttctatgtaaatgatggtgcaaaaa |
516 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29420344 |
gttctgtacccagtaatcatgttttattcttataaatttgcttaatccatgatgaaaatattcactttccttgacttctatgtaaatg------------ |
29420257 |
T |
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| Q |
517 |
cattataatacatatattcttttagttttttactcttgtggtgcacttagtgtgcgttttgaaatatctgtg |
588 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29420256 |
----ataatatatatattcttttagttttttactcttgtggtgcacttagtgtgcgttttgaaatatctgtg |
29420189 |
T |
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