View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3900_low_15 (Length: 238)
Name: NF3900_low_15
Description: NF3900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3900_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 11237086 - 11236866
Alignment:
| Q |
1 |
agctgagagggcgaatttgcgagaggagttggcgaaggctaagacgagatggaggcgcgtggtggacaagtgaaggtgttttttgatgaatttgggatcg |
100 |
Q |
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| T |
11237086 |
agctgagagggcgaatttgcgagaggaattggcgaaggctaagacgagatggaggcgcgtggtggacacgtgaaggtgttttttgatgaatttgggatcg |
11236987 |
T |
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| Q |
101 |
gagatgagagatttccaggacttacagacggattggagttgcatgaggaatttgaccggaagtctggagagaatctccgctacgatctcgaatggaagag |
200 |
Q |
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| T |
11236986 |
gagatgagagatttccaggacttacagacggattggagttgcatgaggtatttgactggcagcctggagagaatctccgcgacgatctcgaatggaagag |
11236887 |
T |
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| Q |
201 |
ttggaatggttgatgaggaag |
221 |
Q |
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| T |
11236886 |
tcggaatggttgatgaggaag |
11236866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 57 - 206
Target Start/End: Original strand, 7169404 - 7169553
Alignment:
| Q |
57 |
gcgtggtggacaagtgaaggtgttttttgatgaatttgggatcggagatgagagatttccaggacttacagacggattggagttgcatgaggaatttgac |
156 |
Q |
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| T |
7169404 |
gcgtggttgacaagcgaaggtgattcttagcgaattttgaatcggagataagagatttccaggacttacagacggattggagttgcatgagaaacttgac |
7169503 |
T |
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| Q |
157 |
cggaagtctggagagaatctccgctacgatctcgaatggaagagttggaa |
206 |
Q |
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| T |
7169504 |
tggaagcctggagagaatttccgccacaatctcgaatggaagagtgggaa |
7169553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 54 - 206
Target Start/End: Original strand, 7156899 - 7157051
Alignment:
| Q |
54 |
ggcgcgtggtggacaagtgaaggtgttttttgatgaatttgggatcggagatgagagatttccaggacttacagacggattggagttgcatgaggaattt |
153 |
Q |
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|||||||||| |||| |||||||| |||||| ||||||| ||||| |||||||||||||||| ||||||||||| |||||||||||||||| | || |
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| T |
7156899 |
ggcgcgtggttgacacatgaaggtgctttttggcgaatttgtgatcgaagatgagagatttccattacttacagacgcattggagttgcatgagagactt |
7156998 |
T |
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| Q |
154 |
gaccggaagtctggagagaatctccgctacgatctcgaatggaagagttggaa |
206 |
Q |
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| T |
7156999 |
cacgggaagccgggagagaatctctacaacgagatcgaatggaagagtcggaa |
7157051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 174
Target Start/End: Original strand, 7161516 - 7161579
Alignment:
| Q |
111 |
atttccaggacttacagacggattggagttgcatgaggaatttgaccggaagtctggagagaat |
174 |
Q |
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| T |
7161516 |
atttccaggatttgcagaccgatttgagttgcatgagggatttgactggaagcctggaaagaat |
7161579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 162
Target Start/End: Complemental strand, 24722663 - 24722589
Alignment:
| Q |
88 |
gaatttgggatcggagatgagagatttccaggacttacagacggattggagttgcatgaggaatttgaccggaag |
162 |
Q |
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| T |
24722663 |
gaatttaggatgggagatgaatgatttccaggacttgcagacacatttgaattgcatgagggacttgaccggaag |
24722589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 147
Target Start/End: Complemental strand, 43991338 - 43991292
Alignment:
| Q |
101 |
gagatgagagatttccaggacttacagacggattggagttgcatgag |
147 |
Q |
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| T |
43991338 |
gagataagagatttccaggacttgcagatgcattggagttgcatgag |
43991292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 2679178 - 2679242
Alignment:
| Q |
89 |
aatttgggatcggagatgagagatttccaggacttacagacggattggagttgcatgaggaattt |
153 |
Q |
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||||| ||||||||||| ||||||||||| ||||| ||||| || ||||||| | ||||||||| |
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| T |
2679178 |
aattttggatcggagatcagagatttccatgacttgcagacacatcggagttgaaggaggaattt |
2679242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 2687085 - 2687149
Alignment:
| Q |
89 |
aatttgggatcggagatgagagatttccaggacttacagacggattggagttgcatgaggaattt |
153 |
Q |
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| T |
2687085 |
aattttggatcggagatcagagatttccatgacttgcagacacatcggagttgaaggaggaattt |
2687149 |
T |
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