View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3900_low_2 (Length: 594)
Name: NF3900_low_2
Description: NF3900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3900_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 558; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 1 - 586
Target Start/End: Original strand, 30768293 - 30768878
Alignment:
| Q |
1 |
cgagcttgtcaatggaagactttgctttcttgatgagccaatccactgctttgcttggtctgtcgtagccgaggcgatcttgaacatcgtagaattcgat |
100 |
Q |
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| T |
30768293 |
cgagcttgtcaatggaagactttgctttcttgatgagccaatccactgctttgcttggtctgtcgtagccgaggcgatcttgaacatcgtagaattcgat |
30768392 |
T |
|
| Q |
101 |
ggctgtgtgtgctgagagtcgaaccctgcgatcgcgaggaccttttgatgtgtaaaccttgctgtgacgatcttttttaccggtggctcgaactatgtgt |
200 |
Q |
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| T |
30768393 |
ggctgtgtgtgctgagagtcgaaccctgcgatcgcgaggaccttttgatgtgtaaaccttgctgtgacgatcttttttaccggtggctcgaactatgtgt |
30768492 |
T |
|
| Q |
201 |
cctccttctacttgaactatctctcctccagtactcctcatccctagttctcaccttctctatgctttctatggaaagttgtttctatttggtggggttg |
300 |
Q |
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| T |
30768493 |
cctccttctacttgaactatctctcctccagtactcctcatccctagttcccaccttctctatgctttctatgaaaagttgtttctatttggtggggttg |
30768592 |
T |
|
| Q |
301 |
gttttgggcttattgatgaggatattgataatgagtgtgtttttatttggagaaatgcaagtctaaccggaaagtgcttataaagagagtcactcctcac |
400 |
Q |
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| T |
30768593 |
gttttgggcttattgatgaggatattgataatgagtgtgtttttatttggagaaatgcaagtctaaccggaaagtgcttataaagagagtcactcctcac |
30768692 |
T |
|
| Q |
401 |
cctacaaccggttttgtaacgatgagttttaaaactaataaagtttaagtgttgttgttatgattcatgtgccctttgaaatcctacttctttttaggac |
500 |
Q |
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| T |
30768693 |
cctacaaccggttttgtaacgatgagttttaaaactaataaagtttaagtgttgttgttatgattcatgtgccctttgaagtcctacttctttttaggac |
30768792 |
T |
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| Q |
501 |
aaaagttacgaattgttttaaaggtgttgactatgctactcattaattataataggtgtcgctctggctttaaatggatctctgct |
586 |
Q |
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| T |
30768793 |
aaaagttatgtatttttttaaaggtgttgactatgctactcattaattataataggtgtcgctctggctttaaatggatatctgct |
30768878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 6 - 229
Target Start/End: Original strand, 39077272 - 39077495
Alignment:
| Q |
6 |
ttgtcaatggaagactttgctttcttgatgagccaatccactgctttgcttggtctgtcgtagccgaggcgatcttgaacatcgtagaattcgatggctg |
105 |
Q |
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| T |
39077272 |
ttgtcaatggcagacttagcctttttgataagccaatcaacagctttactcggtctgtcgtagccgagacggtcttgaacatcatagaattgaattgctg |
39077371 |
T |
|
| Q |
106 |
tgtgtgctgagagtcgaaccctgcgatcgcgaggaccttttgatgtgtaaaccttgctgtgacgatcttttttaccggtggctcgaactatgtgtcctcc |
205 |
Q |
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| T |
39077372 |
tgtgtgctgataatcgaacacgtcgatcacgaggacctttcgcagtgtataccttactatgtctgtcttttctacctgtcgcccttacaatgtggcctcc |
39077471 |
T |
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| Q |
206 |
ttctacttgaactatctctcctcc |
229 |
Q |
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|| ||||||||||| |||||||| |
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| T |
39077472 |
ttgaacttgaactatttctcctcc |
39077495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 24 - 175
Target Start/End: Complemental strand, 22328097 - 22327946
Alignment:
| Q |
24 |
gctttcttgatgagccaatccactgctttgcttggtctgtcgtagccgaggcgatcttgaacatcgtagaattcgatggctgtgtgtgctgagagtcgaa |
123 |
Q |
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| T |
22328097 |
gcttttttaatgagccaatcgactgctttacttggccggtcgtagccgagacgatcttgcacgtcgtagaattgaatcgcagtgtgggctgagagtcgta |
22327998 |
T |
|
| Q |
124 |
ccctgcgatcgcgaggaccttttgatgtgtaaaccttgctgtgacgatcttt |
175 |
Q |
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| | ||| || || |||||||| | ||| |||| || |||||||| ||||| |
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| T |
22327997 |
cacggcggtcacggggacctttcgcggtgcaaactttactgtgacggtcttt |
22327946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 378 - 428
Target Start/End: Original strand, 44573371 - 44573423
Alignment:
| Q |
378 |
ttataaagag-agtcactcctcaccctacaa-ccggttttgtaacgatgagtt |
428 |
Q |
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| T |
44573371 |
ttataaagaggaggcactcctcaccctacaagccggttttgtaaggatgagtt |
44573423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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