View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3900_low_3 (Length: 434)

Name: NF3900_low_3
Description: NF3900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3900_low_3
NF3900_low_3
[»] chr1 (26 HSPs)
chr1 (218-424)||(52059753-52059961)
chr1 (19-222)||(52060002-52060201)
chr1 (274-396)||(33527201-33527323)
chr1 (274-333)||(30371105-30371164)
chr1 (274-344)||(49517016-49517086)
chr1 (274-334)||(25006088-25006148)
chr1 (274-321)||(7218128-7218175)
chr1 (274-377)||(36070163-36070266)
chr1 (274-344)||(17269196-17269266)
chr1 (274-344)||(40304108-40304178)
chr1 (280-344)||(15579429-15579492)
chr1 (274-330)||(27738234-27738290)
chr1 (349-396)||(4576667-4576714)
chr1 (274-333)||(28467361-28467420)
chr1 (285-332)||(47877080-47877127)
chr1 (300-374)||(2831656-2831730)
chr1 (281-339)||(15360845-15360903)
chr1 (303-397)||(34404929-34405023)
chr1 (274-344)||(49557087-49557157)
chr1 (349-394)||(11218090-11218135)
chr1 (354-395)||(31517887-31517928)
chr1 (274-371)||(31623942-31624039)
chr1 (349-394)||(48064189-48064234)
chr1 (274-318)||(15515513-15515557)
chr1 (274-334)||(34179926-34179986)
chr1 (286-334)||(44032065-44032113)
[»] chr7 (16 HSPs)
chr7 (274-377)||(12110273-12110376)
chr7 (276-344)||(45813236-45813304)
chr7 (274-333)||(1417221-1417280)
chr7 (274-377)||(30535476-30535579)
chr7 (274-344)||(5006563-5006633)
chr7 (274-340)||(30496654-30496720)
chr7 (274-334)||(9527144-9527204)
chr7 (274-342)||(30456504-30456572)
chr7 (336-396)||(31002934-31002994)
chr7 (349-396)||(425966-426013)
chr7 (297-344)||(35536053-35536100)
chr7 (315-397)||(41668205-41668287)
chr7 (315-397)||(41668883-41668965)
chr7 (276-321)||(28340452-28340497)
chr7 (272-344)||(46081979-46082052)
chr7 (277-333)||(45777228-45777284)
[»] chr4 (23 HSPs)
chr4 (307-374)||(53422278-53422345)
chr4 (274-394)||(20936283-20936404)
chr4 (274-321)||(6927547-6927594)
chr4 (277-368)||(42321936-42322027)
chr4 (274-344)||(24160549-24160619)
chr4 (274-344)||(49219085-49219155)
chr4 (280-340)||(4071832-4071892)
chr4 (279-327)||(13949903-13949951)
chr4 (274-334)||(25885815-25885875)
chr4 (274-344)||(3175897-3175967)
chr4 (274-340)||(24929443-24929509)
chr4 (274-344)||(29373941-29374011)
chr4 (274-344)||(35958601-35958671)
chr4 (274-340)||(45128364-45128430)
chr4 (278-344)||(50745946-50746012)
chr4 (276-333)||(10192241-10192298)
chr4 (282-331)||(11917518-11917567)
chr4 (274-374)||(6466100-6466200)
chr4 (276-332)||(18630638-18630694)
chr4 (285-344)||(21952907-21952966)
chr4 (274-314)||(30207625-30207665)
chr4 (288-344)||(44007940-44007996)
chr4 (272-344)||(52645802-52645873)
[»] scaffold0024 (1 HSPs)
scaffold0024 (274-344)||(27522-27592)
[»] chr8 (12 HSPs)
chr8 (274-344)||(42597347-42597417)
chr8 (274-374)||(926403-926504)
chr8 (307-394)||(34522143-34522230)
chr8 (274-321)||(34770861-34770908)
chr8 (274-320)||(9834843-9834889)
chr8 (274-344)||(29973027-29973097)
chr8 (274-344)||(30627956-30628026)
chr8 (274-311)||(7645957-7645994)
chr8 (274-398)||(16163332-16163456)
chr8 (274-344)||(9699947-9700017)
chr8 (277-345)||(39561598-39561666)
chr8 (276-344)||(13561368-13561436)
[»] chr3 (18 HSPs)
chr3 (279-344)||(2865718-2865782)
chr3 (274-342)||(237345-237413)
chr3 (278-327)||(2318607-2318656)
chr3 (274-339)||(22214735-22214800)
chr3 (300-372)||(2128331-2128403)
chr3 (274-398)||(44014172-44014296)
chr3 (323-377)||(36587889-36587944)
chr3 (274-344)||(10101530-10101600)
chr3 (274-344)||(10212455-10212525)
chr3 (274-374)||(44295448-44295545)
chr3 (275-321)||(48397615-48397661)
chr3 (274-315)||(2923453-2923494)
chr3 (275-344)||(32555036-32555105)
chr3 (274-343)||(36783388-36783457)
chr3 (275-332)||(48364934-48364991)
chr3 (277-321)||(3467445-3467489)
chr3 (274-306)||(22214713-22214745)
chr3 (280-344)||(32703084-32703148)
[»] chr2 (17 HSPs)
chr2 (285-396)||(28039397-28039508)
chr2 (274-320)||(35755556-35755602)
chr2 (276-377)||(42907269-42907373)
chr2 (274-330)||(11513858-11513914)
chr2 (274-321)||(33942119-33942166)
chr2 (274-344)||(656831-656901)
chr2 (300-372)||(43259752-43259824)
chr2 (274-393)||(4090246-4090365)
chr2 (274-344)||(23143032-23143102)
chr2 (274-344)||(23554822-23554892)
chr2 (274-344)||(28933770-28933840)
chr2 (275-321)||(33944574-33944620)
chr2 (287-344)||(28902023-28902080)
chr2 (274-331)||(40145421-40145478)
chr2 (275-332)||(43529906-43529963)
chr2 (300-344)||(787277-787321)
chr2 (276-344)||(11344340-11344408)
[»] chr6 (13 HSPs)
chr6 (274-367)||(4006637-4006730)
chr6 (274-344)||(10452414-10452484)
chr6 (274-344)||(29274283-29274353)
chr6 (300-374)||(33080662-33080736)
chr6 (297-344)||(24782005-24782052)
chr6 (274-344)||(1402942-1403012)
chr6 (274-344)||(2027460-2027530)
chr6 (274-344)||(9093610-9093680)
chr6 (274-344)||(33067105-33067174)
chr6 (283-344)||(24836262-24836323)
chr6 (274-334)||(2727910-2727970)
chr6 (274-322)||(5623124-5623172)
chr6 (300-344)||(34405051-34405095)
[»] chr5 (10 HSPs)
chr5 (274-340)||(10303751-10303815)
chr5 (274-394)||(18857454-18857574)
chr5 (274-321)||(12975316-12975363)
chr5 (278-317)||(15905563-15905602)
chr5 (295-344)||(10363696-10363745)
chr5 (274-339)||(37526253-37526318)
chr5 (274-339)||(37588414-37588479)
chr5 (274-339)||(37690691-37690756)
chr5 (276-321)||(40120089-40120134)
chr5 (276-320)||(41016149-41016193)


Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-100; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 218 - 424
Target Start/End: Complemental strand, 52059961 - 52059753
Alignment:
Q  218 ttatctactgacgtaagcatttctgacacttttgtagaga--catattaacttatttctatgaaaacaacttataggttacatgaaaacaatttgatttt 315  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  52059961 ttatctactgacgtaagcatttctgacacttttgtagagagacatattaacttatttctaagaaaacaacttataggttacatgaaaacaatttgatttt 52059862  T
Q  316 attttaacttgtgttatagtaatagcttactcgtaagagcttatgctataagctgcaaattatgtaatttatccaaacaggagttacatccctcttcatt 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  52059861 attttaacttgtgttatagtaatagcttactcgtaagagcttatgctataagcttcaaattatgtaatttatccaaacatgagttacatccctcttcatt 52059762  T
Q  416 cacaggttc 424  Q
    |||||||||    
T  52059761 cacaggttc 52059753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 19 - 222
Target Start/End: Complemental strand, 52060201 - 52060002
Alignment:
Q  19 catatcatgtaatttttgtttaatcttctctgtagtaataataatatttaagttacttatgatttacatttggttccaactttgattcaattttggcgtg 118  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  || ||| ||||  | | ||    ||||    
T  52060201 catatcatgtaatttttgtttaatcttctctgtattaataataatatttaagttacttatgatttacatttcttttcaattttggctgattta---cgtg 52060105  T
Q  119 cttctgccaaacttgtataactaattgcataacataacttatttcttattttattttttgctctgttattataactcacagaccctaattaccaaaatgt 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||    
T  52060104 cttctgccaaacttgtataactaattgcataacataacttatttcttattttat-ttttggtctgttattataattcacagaccctaattaccaaaatgt 52060006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 274 - 396
Target Start/End: Original strand, 33527201 - 33527323
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagcttactcgtaagagcttatgctataagctgcaa 373  Q
    |||||||||| ||||||| ||| ||||||||| ||||| | ||||||| ||| |||| ||| ||||||||| || |||| ||||||||| ||||||||||    
T  33527201 tatgaaaacagcttatagattatatgaaaacagtttgactgtattttatcttttgttttagaaatagcttattcataagcgcttatgctctaagctgcaa 33527300  T
Q  374 attatgtaatttatccaaacagg 396  Q
    | || |   ||||||||||||||    
T  33527301 aataagctgtttatccaaacagg 33527323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 274 - 333
Target Start/End: Complemental strand, 30371164 - 30371105
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttata 333  Q
    |||||||||||||||||| ||| ||||||||||||||| ||||||||| ||| |||||||    
T  30371164 tatgaaaacaacttatagcttatatgaaaacaatttgagtttattttatcttttgttata 30371105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 274 - 344
Target Start/End: Complemental strand, 49517086 - 49517016
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 344  Q
    |||||||||| ||||||| ||| ||||||||||||||| ||||||||| ||| |||||||| |||| ||||    
T  49517086 tatgaaaacagcttatagcttaaatgaaaacaatttgactttattttatcttttgttatagaaataactta 49517016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 334
Target Start/End: Original strand, 25006088 - 25006148
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatag 334  Q
    |||||||||||||||||| ||| ||||||||||||||| ||||||||| | | ||||||||    
T  25006088 tatgaaaacaacttatagcttatatgaaaacaatttgactttattttaccgtctgttatag 25006148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 274 - 321
Target Start/End: Original strand, 7218128 - 7218175
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttatttta 321  Q
    |||||||||||||||||| ||| ||||||||||||||| |||||||||    
T  7218128 tatgaaaacaacttatagcttatatgaaaacaatttgactttatttta 7218175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 274 - 377
Target Start/End: Complemental strand, 36070266 - 36070163
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagcttactcgtaagagcttatgctataagctgcaa 373  Q
    |||||||||||||||||| |||   ||| ||||||| | ||||||||| ||| |||||||  ||||||  |  | |||| ||||||||||||||||||||    
T  36070266 tatgaaaacaacttatagcttatccgaagacaatttaactttattttatcttttgttataaaaatagcccatacataagcgcttatgctataagctgcaa 36070167  T
Q  374 atta 377  Q
    ||||    
T  36070166 atta 36070163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 344
Target Start/End: Complemental strand, 17269266 - 17269196
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 344  Q
    |||||||||||||||| | ||| ||||||||||||||| |||||||| |||| |||| ||| |||| ||||    
T  17269266 tatgaaaacaacttattgcttatatgaaaacaatttgactttattttcacttttgttctagaaataactta 17269196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 344
Target Start/End: Original strand, 40304108 - 40304178
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 344  Q
    |||||||||| ||||||  ||| ||||||||||| ||||||||||||| ||| |||||||  |||||||||    
T  40304108 tatgaaaacagcttataacttatatgaaaacaatgtgattttattttatcttttgttatataaatagctta 40304178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 344
Target Start/End: Complemental strand, 15579492 - 15579429
Alignment:
Q  280 aacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 344  Q
    |||| ||||||| ||||||||||||||||||| ||||||| |||||  ||||||| |||||||||    
T  15579492 aacagcttatagcttacatgaaaacaatttga-tttatttgaactttagttatagaaatagctta 15579429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 330
Target Start/End: Original strand, 27738234 - 27738290
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgtt 330  Q
    ||||||||||| |||||| ||| ||||||||||||||| ||||||||| ||| ||||    
T  27738234 tatgaaaacaaattatagcttatatgaaaacaatttgactttattttatcttttgtt 27738290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 396
Target Start/End: Complemental strand, 4576714 - 4576667
Alignment:
Q  349 taagagcttatgctataagctgcaaattatgtaatttatccaaacagg 396  Q
    |||| ||||||||||||||||  ||||||||| |||||||||||||||    
T  4576714 taagcgcttatgctataagctataaattatgttatttatccaaacagg 4576667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 333
Target Start/End: Original strand, 28467361 - 28467420
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttata 333  Q
    |||||||||||||| ||| ||| ||||||| ||||||| ||||||||| ||| |||||||    
T  28467361 tatgaaaacaacttgtagcttatatgaaaataatttgactttattttatcttttgttata 28467420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 332
Target Start/End: Complemental strand, 47877127 - 47877080
Alignment:
Q  285 cttataggttacatgaaaacaatttgattttattttaacttgtgttat 332  Q
    ||||||| ||| ||||||||||||||||||||||||| ||| ||||||    
T  47877127 cttatagtttatatgaaaacaatttgattttattttatcttttgttat 47877080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 374
Target Start/End: Complemental strand, 2831730 - 2831656
Alignment:
Q  300 aaaacaatttgattttattttaacttgtgttatagtaatagcttactcgtaagagcttatgctataagctgcaaa 374  Q
    |||| ||| ||| ||||||||| |||||||||| | ||||||||| ||  ||| ||||||||||||||| |||||    
T  2831730 aaaaaaatatgactttattttagcttgtgttattgaaatagcttattcacaagcgcttatgctataagcagcaaa 2831656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 339
Target Start/End: Complemental strand, 15360903 - 15360845
Alignment:
Q  281 acaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaata 339  Q
    ||||||||||| ||| ||||||||| ||||| ||||||||| ||| |||||||| ||||    
T  15360903 acaacttatagcttatatgaaaacagtttgactttattttatcttttgttatagaaata 15360845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 397
Target Start/End: Complemental strand, 34405023 - 34404929
Alignment:
Q  303 acaatttgattttattttaacttgtgttatagtaatagcttactcgtaagagcttatgctataagctgcaaattatgtaatttatccaaacagga 397  Q
    ||||||| | ||||||||| ||||||| | || || |||||| || |||| ||||| | |||||||| ||||||| ||  |||||||||||||||    
T  34405023 acaattttactttattttatcttgtgtaaaagaaacagcttattcataagtgcttacgttataagcttcaaattaagttgtttatccaaacagga 34404929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 344
Target Start/End: Complemental strand, 49557157 - 49557087
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 344  Q
    |||||||||||||||||| ||| ||||| || |||| | ||||||||| ||| |||||||| |||| ||||    
T  49557157 tatgaaaacaacttatagcttaaatgaatactatttaactttattttatcttttgttatagaaataactta 49557087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 394
Target Start/End: Original strand, 11218090 - 11218135
Alignment:
Q  349 taagagcttatgctataagctgcaaattatgtaatttatccaaaca 394  Q
    |||||| || ||||||||||||||||||||||  ||||||||||||    
T  11218090 taagagattgtgctataagctgcaaattatgttgtttatccaaaca 11218135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 395
Target Start/End: Original strand, 31517887 - 31517928
Alignment:
Q  354 gcttatgctataagctgcaaattatgtaatttatccaaacag 395  Q
    |||||||||||||||||||||||| |  ||||||||||||||    
T  31517887 gcttatgctataagctgcaaattaagctatttatccaaacag 31517928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 371
Target Start/End: Complemental strand, 31624039 - 31623942
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagcttactcgtaagagcttatgctataagctgc 371  Q
    ||||| ||||||||||||  || || || ||||||||| |||| |||| | |||||||  | ||||||||| || |||| ||| ||||||||||||||    
T  31624039 tatgataacaacttatagcatatatcaatacaatttgactttaatttatcatgtgttaccgaaatagcttattcttaagcgctgatgctataagctgc 31623942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 394
Target Start/End: Complemental strand, 48064234 - 48064189
Alignment:
Q  349 taagagcttatgctataagctgcaaattatgtaatttatccaaaca 394  Q
    |||| |||||||||||||||||||||||| ||  ||||||||||||    
T  48064234 taagggcttatgctataagctgcaaattaagttgtttatccaaaca 48064189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 318
Target Start/End: Complemental strand, 15515557 - 15515513
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttatt 318  Q
    |||||||||||||||||| ||| | ||||||| ||||||||||||    
T  15515557 tatgaaaacaacttatagcttatacgaaaacattttgattttatt 15515513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 334
Target Start/End: Original strand, 34179926 - 34179986
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatag 334  Q
    ||||||||||  |||||| ||| || |||||||||||| ||||||||| ||| ||||||||    
T  34179926 tatgaaaacagtttatagcttagattaaaacaatttgactttattttatcttttgttatag 34179986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 334
Target Start/End: Original strand, 44032065 - 44032113
Alignment:
Q  286 ttataggttacatgaaaacaatttgattttattttaacttgtgttatag 334  Q
    |||||| ||| ||||||||||||||| ||||||||| ||| ||||||||    
T  44032065 ttatagcttatatgaaaacaatttgactttattttagcttttgttatag 44032113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 274 - 377
Target Start/End: Complemental strand, 12110376 - 12110273
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagcttactcgtaagagcttatgctataagctgcaa 373  Q
    |||||||||| ||||||| ||| |  |||||||||||| ||||||||| ||||||| |||| ||||| ||| || |||| |||||||||||||| |||||    
T  12110376 tatgaaaacagcttatagcttataccaaaacaatttgactttattttatcttgtgtaatagaaataggttattcataagtgcttatgctataagttgcaa 12110277  T
Q  374 atta 377  Q
    ||||    
T  12110276 atta 12110273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 276 - 344
Target Start/End: Original strand, 45813236 - 45813304
Alignment:
Q  276 tgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 344  Q
    |||||||||||||||| ||| |||||||||| |||| ||||||||| ||| || ||||| |||||||||    
T  45813236 tgaaaacaacttatagattatatgaaaacaagttgactttattttatcttttggtatagaaatagctta 45813304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 274 - 333
Target Start/End: Complemental strand, 1417280 - 1417221
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttata 333  Q
    |||||||||||||||| | ||| ||||||||||||||| ||||||||| ||| |||||||    
T  1417280 tatgaaaacaacttattgcttatatgaaaacaatttgactttattttatcttttgttata 1417221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 274 - 377
Target Start/End: Complemental strand, 30535579 - 30535476
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagcttactcgtaagagcttatgctataagctgcaa 373  Q
    |||| ||||| ||||||| ||| | ||||||| ||  |||| |||||| ||| |||||||| | || ||||  |||||| ||||||||||||||||||||    
T  30535579 tatggaaacagcttatagattatacgaaaacacttcaatttaattttatcttttgttatagaagtaacttatacgtaagtgcttatgctataagctgcaa 30535480  T
Q  374 atta 377  Q
    ||||    
T  30535479 atta 30535476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 344
Target Start/End: Original strand, 5006563 - 5006633
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 344  Q
    ||||||||||| |||||  ||| ||||||||| ||||| ||||||||| ||| |||||||| |||||||||    
T  5006563 tatgaaaacaatttataccttatatgaaaacagtttgactttattttatcttttgttataggaatagctta 5006633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 340
Target Start/End: Complemental strand, 30496720 - 30496654
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatag 340  Q
    |||||||||||| ||||||||| | ||||||||||||| |||||||||  || |||||||| |||||    
T  30496720 tatgaaaacaacctataggttatacgaaaacaatttgactttattttatattttgttatagaaatag 30496654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 334
Target Start/End: Original strand, 9527144 - 9527204
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatag 334  Q
    |||||||||||||||||| ||| ||||||||| ||||| |||||| || ||| ||||||||    
T  9527144 tatgaaaacaacttatagtttatatgaaaacagtttgactttattatatcttttgttatag 9527204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 342
Target Start/End: Original strand, 30456504 - 30456572
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagct 342  Q
    ||||||||| |||||||  ||| ||||||||||||||| ||||||||| ||| |||| ||| |||||||    
T  30456504 tatgaaaaccacttataacttatatgaaaacaatttgactttattttatcttttgttttagaaatagct 30456572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 336 - 396
Target Start/End: Original strand, 31002934 - 31002994
Alignment:
Q  336 aatagcttactcgtaagagcttatgctataagctgcaaattatgtaatttatccaaacagg 396  Q
    |||||||||| | |||| |||||||||||||| ||||||||| ||  ||||||||||||||    
T  31002934 aatagcttacacataagcgcttatgctataagatgcaaattaagttgtttatccaaacagg 31002994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 396
Target Start/End: Original strand, 425966 - 426013
Alignment:
Q  349 taagagcttatgctataagctgcaaattatgtaatttatccaaacagg 396  Q
    |||| ||||||||||||||||||||| || || |||||||||||||||    
T  425966 taagcgcttatgctataagctgcaaaataagttatttatccaaacagg 426013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 344
Target Start/End: Complemental strand, 35536100 - 35536053
Alignment:
Q  297 atgaaaacaatttgattttattttaacttgtgttatagtaatagctta 344  Q
    ||||||||||||||| ||||||||| ||| |||||||| |||||||||    
T  35536100 atgaaaacaatttgactttattttatcttatgttatagaaatagctta 35536053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 397
Target Start/End: Original strand, 41668205 - 41668287
Alignment:
Q  315 tattttaacttgtgttatagtaatagcttactcgtaagagcttatgctataagctgcaaattatgtaatttatccaaacagga 397  Q
    ||||||| |||| ||||||| ||||||||| || |||| |||||||||||  |||||||| || |   |||||||||||||||    
T  41668205 tattttatcttgggttatagaaatagcttattcataagcgcttatgctatcggctgcaaaataagctgtttatccaaacagga 41668287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 397
Target Start/End: Original strand, 41668883 - 41668965
Alignment:
Q  315 tattttaacttgtgttatagtaatagcttactcgtaagagcttatgctataagctgcaaattatgtaatttatccaaacagga 397  Q
    ||||||| |||| ||||||| ||||||||| || |||| |||||||||||  |||||||| || |   |||||||||||||||    
T  41668883 tattttatcttgggttatagaaatagcttattcataagcgcttatgctatcggctgcaaaataagctgtttatccaaacagga 41668965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 321
Target Start/End: Original strand, 28340452 - 28340497
Alignment:
Q  276 tgaaaacaacttataggttacatgaaaacaatttgattttatttta 321  Q
    |||||||||||||||  ||||||||||||| ||||| |||||||||    
T  28340452 tgaaaacaacttataacttacatgaaaacagtttgactttatttta 28340497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 344
Target Start/End: Complemental strand, 46082052 - 46081979
Alignment:
Q  272 tctatgaaaacaacttataggttacatgaaaaca-atttgattttattttaacttgtgttatagtaatagctta 344  Q
    |||||||||||||||||||  ||| |||||||||  ||||| ||| |||||||||  ||||||| |||||||||    
T  46082052 tctatgaaaacaacttataacttatatgaaaacagttttgactttgttttaactttcgttatagaaatagctta 46081979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 333
Target Start/End: Original strand, 45777228 - 45777284
Alignment:
Q  277 gaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttata 333  Q
    ||||||||||||||| ||| ||||||||| ||||| || |||||| ||| |||||||    
T  45777228 gaaaacaacttatagtttatatgaaaacagtttgacttaattttatcttttgttata 45777284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 307 - 374
Target Start/End: Complemental strand, 53422345 - 53422278
Alignment:
Q  307 tttgattttattttaacttgtgttatagtaatagcttactcgtaagagcttatgctataagctgcaaa 374  Q
    ||||| ||||||||| |||||||| ||| ||||||||| || ||||||||||||||||||||||||||    
T  53422345 tttgaatttattttatcttgtgttgtagaaatagcttattcataagagcttatgctataagctgcaaa 53422278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 274 - 394
Target Start/End: Original strand, 20936283 - 20936404
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctt-actcgtaagagcttatgctataagctgca 372  Q
    |||||||||||| ||||| ||| || |||||||||||| || |||||| |||| |||||||  ||||||| |  | |||| |||||| ||||||||||||    
T  20936283 tatgaaaacaacctatagattatataaaaacaatttgacttcattttaccttgcgttatagatatagcttaaaacataagtgcttatactataagctgca 20936382  T
Q  373 aattatgtaatttatccaaaca 394  Q
    ||||| |   ||||||||||||    
T  20936383 aattaagctctttatccaaaca 20936404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 274 - 321
Target Start/End: Original strand, 6927547 - 6927594
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttatttta 321  Q
    |||||||||||||||||| ||||||||||||||||| | |||||||||    
T  6927547 tatgaaaacaacttatagtttacatgaaaacaatttaactttatttta 6927594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 277 - 368
Target Start/End: Original strand, 42321936 - 42322027
Alignment:
Q  277 gaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagcttactcgtaagagcttatgctataagc 368  Q
    ||||||||||||||  ||| ||||||||||||||| ||||||||| | | |||||||  ||||||||| || |||   ||||||||||||||    
T  42321936 gaaaacaacttataatttatatgaaaacaatttgactttattttatcatttgttataaaaatagcttattcataaacacttatgctataagc 42322027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 344
Target Start/End: Original strand, 24160549 - 24160619
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 344  Q
    |||||||||||||||||| ||||||||||| | ||||| ||||| ||| ||| |||||||| || ||||||    
T  24160549 tatgaaaacaacttatagcttacatgaaaatagtttgaatttatattatcttttgttatagaaaaagctta 24160619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 344
Target Start/End: Complemental strand, 49219155 - 49219085
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 344  Q
    |||||||||||||||||| ||| ||||||| ||||||| |||||||||  || |||||||| |||| ||||    
T  49219155 tatgaaaacaacttatagcttatatgaaaataatttgactttattttatattttgttatagaaataactta 49219085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 340
Target Start/End: Complemental strand, 4071892 - 4071832
Alignment:
Q  280 aacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatag 340  Q
    |||||||||||| ||| ||||||| ||||||| ||||||||| ||| |||||||| |||||    
T  4071892 aacaacttatagcttatatgaaaataatttgactttattttatcttttgttatagaaatag 4071832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 327
Target Start/End: Original strand, 13949903 - 13949951
Alignment:
Q  279 aaacaacttataggttacatgaaaacaatttgattttattttaacttgt 327  Q
    ||||||||||||| ||| ||||||||||||||| ||||||||| |||||    
T  13949903 aaacaacttatagcttatatgaaaacaatttgactttattttatcttgt 13949951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 25885875 - 25885815
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatag 334  Q
    |||||||||||||||||| ||||| ||||||||||| | ||||||||| ||| || |||||    
T  25885875 tatgaaaacaacttatagcttacacgaaaacaatttaactttattttatcttttgctatag 25885815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 344
Target Start/End: Complemental strand, 3175967 - 3175897
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 344  Q
    |||||||||| ||||||  |||| |||||||||||||| ||||||||| ||| || ||||| | |||||||    
T  3175967 tatgaaaacagcttataacttacttgaaaacaatttgactttattttatcttttgctatagaagtagctta 3175897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 340
Target Start/End: Complemental strand, 24929509 - 24929443
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatag 340  Q
    |||||||||||||||||| ||  ||||||||| || || ||||||||| ||| |||||||| |||||    
T  24929509 tatgaaaacaacttatagcttttatgaaaacagttagactttattttatcttttgttatagaaatag 24929443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 344
Target Start/End: Original strand, 29373941 - 29374011
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 344  Q
    ||||||||||| |||||| ||| ||||| ||| |||||  |||||||| ||| |||||||| |||||||||    
T  29373941 tatgaaaacaaattatagcttatatgaatacattttgacattattttatcttctgttatagaaatagctta 29374011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 344
Target Start/End: Complemental strand, 35958671 - 35958601
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 344  Q
    |||||||||| ||| ||| ||| || |||  ||||||| ||||||||||||| |||||||| |||||||||    
T  35958671 tatgaaaacagcttctagcttatataaaacaaatttgactttattttaacttatgttatagaaatagctta 35958601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 340
Target Start/End: Original strand, 45128364 - 45128430
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatag 340  Q
    ||||||||||| |||||| ||| |||| || |||||||||| |||||| ||| |||||||| |||||    
T  45128364 tatgaaaacaatttatagcttatatgagaataatttgatttgattttatcttttgttatagaaatag 45128430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 344
Target Start/End: Complemental strand, 50746012 - 50745946
Alignment:
Q  278 aaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 344  Q
    |||||||||| ||| ||| || |||||| ||||||||||||||| ||| |||||||  |||||||||    
T  50746012 aaaacaacttgtagtttatataaaaacagtttgattttattttatcttttgttataaaaatagctta 50745946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 333
Target Start/End: Complemental strand, 10192298 - 10192241
Alignment:
Q  276 tgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttata 333  Q
    |||||||||||||||  ||| ||||||||||||||| |||||| || ||| |||||||    
T  10192298 tgaaaacaacttataacttatatgaaaacaatttgactttattctatcttttgttata 10192241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 331
Target Start/End: Complemental strand, 11917567 - 11917518
Alignment:
Q  282 caacttataggttacatgaaaacaatttgattttattttaacttgtgtta 331  Q
    |||||||||||||| ||||||| ||||||| ||||||||| ||| |||||    
T  11917567 caacttataggttatatgaaaataatttgactttattttatcttttgtta 11917518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 374
Target Start/End: Original strand, 6466100 - 6466200
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagcttactcgtaagagcttatgctataagctgcaa 373  Q
    |||| ||||||||||||| ||| |  |||| ||||| | ||||||| | |||||||||||  || | |||| || |||| ||||| ||||||||||||||    
T  6466100 tatggaaacaacttatagattatacaaaaagaatttcactttatttgatcttgtgttatataaacaacttattcataagcgcttacgctataagctgcaa 6466199  T
Q  374 a 374  Q
    |    
T  6466200 a 6466200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 332
Target Start/End: Complemental strand, 18630694 - 18630638
Alignment:
Q  276 tgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttat 332  Q
    |||||||||||||||| ||| |||||||| | |||| ||||||||| ||| ||||||    
T  18630694 tgaaaacaacttatagcttatatgaaaaccaattgactttattttatcttttgttat 18630638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 344
Target Start/End: Complemental strand, 21952966 - 21952907
Alignment:
Q  285 cttataggttacatgaaaacaatttgattttattttaacttg-tgttatagtaatagctta 344  Q
    ||||||| ||| ||||||||||||||| |||||||| ||||| |||||||| |||||||||    
T  21952966 cttatagcttatatgaaaacaatttgactttatttt-acttgttgttatagaaatagctta 21952907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 314
Target Start/End: Original strand, 30207625 - 30207665
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattt 314  Q
    |||||||||||||||||| ||| ||||||||| ||||||||    
T  30207625 tatgaaaacaacttatagcttatatgaaaacagtttgattt 30207665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 344
Target Start/End: Original strand, 44007940 - 44007996
Alignment:
Q  288 ataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 344  Q
    |||| ||| ||||||||||||||  ||||||||| ||| || |||||||||||||||    
T  44007940 atagcttatatgaaaacaatttgtctttattttatcttttggtatagtaatagctta 44007996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 344
Target Start/End: Original strand, 52645802 - 52645873
Alignment:
Q  272 tctatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 344  Q
    ||||||||||||| ||||| | ||||| |||||| ||||| || |||||| ||| |||||||| |||||||||    
T  52645802 tctatgaaaacaagttata-gctacataaaaacagtttgaattgattttatcttttgttatagaaatagctta 52645873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 274 - 344
Target Start/End: Complemental strand, 27592 - 27522
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 344  Q
    |||||||||||||||||| ||| ||||||||||||||| ||||||||| ||| |||||||| |||| ||||    
T  27592 tatgaaaacaacttatagtttatatgaaaacaatttgactttattttatcttctgttatagaaataactta 27522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 274 - 344
Target Start/End: Complemental strand, 42597417 - 42597347
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 344  Q
    |||||||||||||||||| || |||||||||||||| | ||||||||| ||| |||||||| |||||||||    
T  42597417 tatgaaaacaacttatagcttgcatgaaaacaattttactttattttatcttttgttatagaaatagctta 42597347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 274 - 374
Target Start/End: Complemental strand, 926504 - 926403
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaaca-atttgattttattttaacttgtgttatagtaatagcttactcgtaagagcttatgctataagctgca 372  Q
    |||||||||||||||||| | | |  ||||||  ||||| ||||||||| |||||||||||| ||||||||| || || | ||||||||||| |||||||    
T  926504 tatgaaaacaacttatagataatacaaaaacagttttgactttattttatcttgtgttatagaaatagcttattcatatgcgcttatgctattagctgca 926405  T
Q  373 aa 374  Q
    ||    
T  926404 aa 926403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 307 - 394
Target Start/End: Original strand, 34522143 - 34522230
Alignment:
Q  307 tttgattttattttaacttgtgttatagtaatagcttactcgtaagagcttatgctataagctgcaaattatgtaatttatccaaaca 394  Q
    ||||| ||||||||| ||||||| |||| ||||||||| || |||| ||||||||| |||| |||||| || ||  ||||||||||||    
T  34522143 tttgactttattttatcttgtgtcatagaaatagcttattcataagcgcttatgctgtaagttgcaaaataagttttttatccaaaca 34522230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 274 - 321
Target Start/End: Complemental strand, 34770908 - 34770861
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttatttta 321  Q
    |||||||||||||||||| ||| ||||||||||||||| |||||||||    
T  34770908 tatgaaaacaacttatagcttaaatgaaaacaatttgactttatttta 34770861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 320
Target Start/End: Original strand, 9834843 - 9834889
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttatttt 320  Q
    |||||||||||||||||| ||| |||||||||||||| |||||||||    
T  9834843 tatgaaaacaacttatagcttatatgaaaacaatttggttttatttt 9834889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 344
Target Start/End: Complemental strand, 29973097 - 29973027
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 344  Q
    |||||||||||||||||| |||  |||||| | ||||| ||||||||| ||||||||| || |||||||||    
T  29973097 tatgaaaacaacttatagcttatgtgaaaatagtttgactttattttaccttgtgttaaagaaatagctta 29973027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 344
Target Start/End: Original strand, 30627956 - 30628026
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 344  Q
    |||||||||||||||||| |||||   ||||||||| ||||||||||| ||| ||||| || |||||||||    
T  30627956 tatgaaaacaacttatagcttacacataaacaattttattttattttatcttttgttacagaaatagctta 30628026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 274 - 311
Target Start/End: Complemental strand, 7645994 - 7645957
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttga 311  Q
    |||||||||||||||||| |||||||||||||||||||    
T  7645994 tatgaaaacaacttatagcttacatgaaaacaatttga 7645957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 398
Target Start/End: Original strand, 16163332 - 16163456
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagcttactcgtaagagcttatgctataagctgcaa 373  Q
    ||||||| || ||||||  ||||| ||||| ||||  | ||| ||||| |||  ||||||| |||||||||  | |||| | |||||||||| |||||||    
T  16163332 tatgaaagcagcttatatcttacacgaaaaaaattaaactttgttttatctttagttatagaaatagcttatacataagtggttatgctataggctgcaa 16163431  T
Q  374 attatgtaatttatccaaacaggag 398  Q
    | || || |||||||||||||||||    
T  16163432 aataagtcatttatccaaacaggag 16163456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 344
Target Start/End: Complemental strand, 9700017 - 9699947
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 344  Q
    |||||||||| ||||||  |||  ||||||||||||||  |||||||||||| |||||| | |||||||||    
T  9700017 tatgaaaacagcttataatttatttgaaaacaatttgaccttattttaacttttgttatcgaaatagctta 9699947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 345
Target Start/End: Original strand, 39561598 - 39561666
Alignment:
Q  277 gaaaacaacttataggttacatgaaaacaatttgattttatttta-acttgtgttatagtaatagcttac 345  Q
    ||||||||||||||| ||| |||||||||| | || ||||||||| |||| |||||||| ||||||||||    
T  39561598 gaaaacaacttatagtttagatgaaaacaaatcgactttattttatactt-tgttatagaaatagcttac 39561666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 344
Target Start/End: Original strand, 13561368 - 13561436
Alignment:
Q  276 tgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 344  Q
    ||||||||| |||||  ||| ||||||||||||||| ||||||| |  || |||||||| |||||||||    
T  13561368 tgaaaacaagttataatttatatgaaaacaatttgactttatttaattttctgttatagaaatagctta 13561436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 279 - 344
Target Start/End: Original strand, 2865718 - 2865782
Alignment:
Q  279 aaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 344  Q
    ||||||||||||||||| ||||||||||||||| ||| ||||||||| |||||||| |||||||||    
T  2865718 aaacaacttataggttatatgaaaacaatttgactttgttttaactt-tgttatagaaatagctta 2865782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 342
Target Start/End: Complemental strand, 237413 - 237345
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagct 342  Q
    |||||||||||||||||  ||||||||| | ||||| ||||||||||| ||| |||||||| |||||||    
T  237413 tatgaaaacaacttataacttacatgaatataattttattttattttatcttctgttatagaaatagct 237345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 278 - 327
Target Start/End: Complemental strand, 2318656 - 2318607
Alignment:
Q  278 aaaacaacttataggttacatgaaaacaatttgattttattttaacttgt 327  Q
    |||||||||||||| ||| |||||||||||||||||| |||||| |||||    
T  2318656 aaaacaacttatagtttatatgaaaacaatttgatttgattttatcttgt 2318607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 274 - 339
Target Start/End: Original strand, 22214735 - 22214800
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaata 339  Q
    |||||||||||||||||||||| ||||| ||||||| | ||||||||| | | |||||||| ||||    
T  22214735 tatgaaaacaacttataggttatatgaatacaatttcactttattttatcctttgttatagaaata 22214800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 372
Target Start/End: Original strand, 2128331 - 2128403
Alignment:
Q  300 aaaacaatttgattttattttaacttgtgttatagtaatagcttactcgtaagagcttatgctataagctgca 372  Q
    |||||||||| | ||||||||| ||| |||||||| |||||||||  | |||  |||||||||||||||||||    
T  2128331 aaaacaatttaactttattttatcttttgttatagaaatagcttatacataaacgcttatgctataagctgca 2128403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 398
Target Start/End: Complemental strand, 44014296 - 44014172
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagcttactcgtaagagcttatgctataagctgcaa 373  Q
    ||||||| || ||||||  ||||| ||||| ||||  | ||| ||||| |||  ||||||| |||||||||  | |||| | |||||||||| |||||||    
T  44014296 tatgaaagcagcttatatcttacacgaaaaaaattaaactttgttttatctttagttatagaaatagcttatacataagtggttatgctataggctgcaa 44014197  T
Q  374 attatgtaatttatccaaacaggag 398  Q
    | || || |||||||||||||||||    
T  44014196 aataagtcatttatccaaacaggag 44014172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 377
Target Start/End: Complemental strand, 36587944 - 36587889
Alignment:
Q  323 cttgtgttatagtaata-gcttactcgtaagagcttatgctataagctgcaaatta 377  Q
    ||||||||||||||||| ||||| || |||| ||||||||||||||||| ||||||    
T  36587944 cttgtgttatagtaataagcttattcataagcgcttatgctataagctgtaaatta 36587889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 344
Target Start/End: Original strand, 10101530 - 10101600
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 344  Q
    |||||||||||||| ||  ||| ||||||||||||| | ||||||||| ||| |||||||| |||| ||||    
T  10101530 tatgaaaacaacttttatcttatatgaaaacaatttaactttattttatcttttgttatagaaataactta 10101600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 344
Target Start/End: Original strand, 10212455 - 10212525
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 344  Q
    |||||||||||||| ||  ||| ||||||||||||| | ||||||||| ||| |||||||| |||| ||||    
T  10212455 tatgaaaacaacttttatcttatatgaaaacaatttaactttattttatcttttgttatagaaataactta 10212525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 374
Target Start/End: Complemental strand, 44295545 - 44295448
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagcttactcgtaagagcttatgctataagctgcaa 373  Q
    |||||||||||||||||| ||| |  |||| |   ||||||||||||| |||| ||||||| ||||||||| ||  ||| |||||| ||| |||||||||    
T  44295545 tatgaaaacaacttatagattataaaaaaaaa---tgattttattttatcttgagttatagaaatagcttattcacaagcgcttatactacaagctgcaa 44295449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 321
Target Start/End: Complemental strand, 48397661 - 48397615
Alignment:
Q  275 atgaaaacaacttataggttacatgaaaacaatttgattttatttta 321  Q
    ||||||||||||||||| ||| || |||||||||||| |||||||||    
T  48397661 atgaaaacaacttatagcttaaataaaaacaatttgactttatttta 48397615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 315
Target Start/End: Complemental strand, 2923494 - 2923453
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgatttt 315  Q
    |||||||||| ||||||| |||||||||| ||||||||||||    
T  2923494 tatgaaaacagcttatagcttacatgaaagcaatttgatttt 2923453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 344
Target Start/End: Original strand, 32555036 - 32555105
Alignment:
Q  275 atgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 344  Q
    ||||||||||||||||| ||| | ||||| ||||||| ||||||||| ||| |||| || |||| |||||    
T  32555036 atgaaaacaacttatagcttataggaaaataatttgactttattttatcttttgttgtaataattgctta 32555105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 343
Target Start/End: Original strand, 36783388 - 36783457
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctt 343  Q
    |||||||||| || |||| ||| ||||||||||||| | ||||||||| ||| || ||||| ||||||||    
T  36783388 tatgaaaacagctaatagtttatatgaaaacaattttactttattttatcttttggtatagaaatagctt 36783457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 332
Target Start/End: Original strand, 48364934 - 48364991
Alignment:
Q  275 atgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttat 332  Q
    ||||||||||||||| |  || ||||||||||||||| ||||||||| ||| ||||||    
T  48364934 atgaaaacaacttatggcgtaaatgaaaacaatttgactttattttatcttttgttat 48364991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 321
Target Start/End: Original strand, 3467445 - 3467489
Alignment:
Q  277 gaaaacaacttataggttacatgaaaacaatttgattttatttta 321  Q
    |||||||||||||||  || ||||||||||||||| |||||||||    
T  3467445 gaaaacaacttatagtctatatgaaaacaatttgactttatttta 3467489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 306
Target Start/End: Original strand, 22214713 - 22214745
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaa 306  Q
    |||||||||||||||||||||| ||||||||||    
T  22214713 tatgaaaacaacttataggttatatgaaaacaa 22214745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 344
Target Start/End: Complemental strand, 32703148 - 32703084
Alignment:
Q  280 aacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 344  Q
    ||||| |||||| ||| ||||||||||||||| ||||||||| ||| | | |||| |||||||||    
T  32703148 aacaatttatagcttatatgaaaacaatttgagtttattttatcttttataatagaaatagctta 32703084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 285 - 396
Target Start/End: Original strand, 28039397 - 28039508
Alignment:
Q  285 cttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagcttactcgtaagagcttatgctataagctgcaaattatgtaatt 384  Q
    ||||||| ||| |||||||||||| || ||||||||| ||||||| |    ||||||||| || || | ||||||||||||| |||||||||| ||  ||    
T  28039397 cttatagtttatatgaaaacaattggactttattttatcttgtgtaaccaaaatagcttattcatatgcgcttatgctataaactgcaaattaagttgtt 28039496  T
Q  385 tatccaaacagg 396  Q
    ||||||||||||    
T  28039497 tatccaaacagg 28039508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 274 - 320
Target Start/End: Original strand, 35755556 - 35755602
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttatttt 320  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||    
T  35755556 tatgaaaacaacttatagcttacatgaaaacaatttgactttatttt 35755602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 276 - 377
Target Start/End: Complemental strand, 42907373 - 42907269
Alignment:
Q  276 tgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagcttactcgtaagagctt---atgctataagctgca 372  Q
    |||||||||||||||| ||| | ||||||||||| | ||||||||  ||| |||||||| |||||||||   ||||| ||||   |||||||||||||||    
T  42907373 tgaaaacaacttatagcttaaacgaaaacaatttaactttattttttcttctgttatagaaatagcttatatgtaagtgcttatcatgctataagctgca 42907274  T
Q  373 aatta 377  Q
    |||||    
T  42907273 aatta 42907269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 330
Target Start/End: Complemental strand, 11513914 - 11513858
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgtt 330  Q
    |||||||||||||||||| ||| ||||||||||||||| ||||||||| ||| ||||    
T  11513914 tatgaaaacaacttatagcttatatgaaaacaatttgactttattttatcttttgtt 11513858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 274 - 321
Target Start/End: Complemental strand, 33942166 - 33942119
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttatttta 321  Q
    |||||||||||||||||| ||||||||||||| ||||| |||||||||    
T  33942166 tatgaaaacaacttatagcttacatgaaaacagtttgactttatttta 33942119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 344
Target Start/End: Original strand, 656831 - 656901
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 344  Q
    ||||||| ||||||| || ||| | ||||||||||||||| ||||||| ||| |||||||| |||||||||    
T  656831 tatgaaatcaacttacagcttatacgaaaacaatttgattatattttatcttttgttatagaaatagctta 656901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 372
Target Start/End: Complemental strand, 43259824 - 43259752
Alignment:
Q  300 aaaacaatttgattttattttaacttgtgttatagtaatagcttactcgtaagagcttatgctataagctgca 372  Q
    ||||| |||||| ||||||||| |||||||||||| |||||||||  |||||| | |||||  ||||||||||    
T  43259824 aaaactatttgactttattttatcttgtgttatagaaatagcttatccgtaagtgattatgtcataagctgca 43259752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 393
Target Start/End: Complemental strand, 4090365 - 4090246
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagcttactcgtaagagcttatgctataagctgcaa 373  Q
    |||| ||||||||||||| ||| |   ||||||||||| ||||||||| |||||||||| | ||||||||| || ||    |||||||| |||||| |||    
T  4090365 tatgtaaacaacttatagattataccgaaacaatttgactttattttatcttgtgttatggaaatagcttattcatacacccttatgctttaagcttcaa 4090266  T
Q  374 attatgtaatttatccaaac 393  Q
    | || ||  |||||||||||    
T  4090265 aataagttgtttatccaaac 4090246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 344
Target Start/End: Original strand, 23143032 - 23143102
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 344  Q
    ||||||||||||| |||| ||| | |||||||||||||||| |||||| ||| ||||| |  |||||||||    
T  23143032 tatgaaaacaactaatagcttataagaaaacaatttgatttgattttatcttttgttacaaaaatagctta 23143102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 344
Target Start/End: Original strand, 23554822 - 23554892
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 344  Q
    ||||||||||||| |||| ||| | |||||||||||||||| |||||| ||| ||||| |  |||||||||    
T  23554822 tatgaaaacaactaatagcttataagaaaacaatttgatttgattttatcttttgttacaaaaatagctta 23554892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 344
Target Start/End: Complemental strand, 28933840 - 28933770
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 344  Q
    ||||||||||| |||||  ||| ||||||| |||||||||| |||||| ||| |||||||  |||||||||    
T  28933840 tatgaaaacaatttataacttaaatgaaaataatttgatttgattttatcttttgttatataaatagctta 28933770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 321
Target Start/End: Complemental strand, 33944620 - 33944574
Alignment:
Q  275 atgaaaacaacttataggttacatgaaaacaatttgattttatttta 321  Q
    |||||||||| |||||| ||| ||||||||||||||| |||||||||    
T  33944620 atgaaaacaatttatagcttatatgaaaacaatttgactttatttta 33944574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 344
Target Start/End: Complemental strand, 28902080 - 28902023
Alignment:
Q  287 tataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 344  Q
    ||||| ||| ||||||||| ||| ||||||||||||||| |||||||  |||||||||    
T  28902080 tatagcttatatgaaaacagtttaattttattttaacttatgttataaaaatagctta 28902023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 331
Target Start/End: Complemental strand, 40145478 - 40145421
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgtta 331  Q
    |||||||||||||||||  |||||| ||||||| |||| ||||||||| ||| |||||    
T  40145478 tatgaaaacaacttataacttacataaaaacaacttgactttattttatcttttgtta 40145421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 332
Target Start/End: Original strand, 43529906 - 43529963
Alignment:
Q  275 atgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttat 332  Q
    ||||||||||||||||| ||| | |||| || ||||||||||||||| ||| ||||||    
T  43529906 atgaaaacaacttatagattataggaaagcagtttgattttattttatcttttgttat 43529963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 344
Target Start/End: Complemental strand, 787321 - 787277
Alignment:
Q  300 aaaacaatttgattttattttaacttgtgttatagtaatagctta 344  Q
    ||||||| |||| ||||||||| |||||||||||| |||||||||    
T  787321 aaaacaagttgactttattttatcttgtgttatagaaatagctta 787277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 344
Target Start/End: Original strand, 11344340 - 11344408
Alignment:
Q  276 tgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 344  Q
    ||||||||| |||||| ||  ||||||||||||||| ||| ||||| ||| |||||||| |||| ||||    
T  11344340 tgaaaacaatttatagcttgtatgaaaacaatttgactttcttttatcttttgttatagaaatatctta 11344408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 274 - 367
Target Start/End: Complemental strand, 4006730 - 4006637
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagcttactcgtaagagcttatgctataag 367  Q
    |||||||||||||||||| ||| || |||||||||||| ||||||||| | | |||||||| |||| ||||  | ||||  |||||||||||||    
T  4006730 tatgaaaacaacttatagcttatataaaaacaatttgactttattttatcatttgttatagaaatatcttatgcataagcacttatgctataag 4006637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 344
Target Start/End: Original strand, 10452414 - 10452484
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 344  Q
    |||| ||||||||||||| ||| ||||||| | |||||||||||||||  || |||||||| |||||||||    
T  10452414 tatggaaacaacttatagcttatatgaaaatagtttgattttattttatattttgttatagaaatagctta 10452484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 344
Target Start/End: Original strand, 29274283 - 29274353
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 344  Q
    ||||||||||  |||||| ||| ||||||||||||||| ||||||||| ||| || ||||| |||||||||    
T  29274283 tatgaaaacagtttatagcttatatgaaaacaatttgactttattttatcttttgctatagaaatagctta 29274353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 374
Target Start/End: Original strand, 33080662 - 33080736
Alignment:
Q  300 aaaacaatttgattttattttaacttgtgttatagtaatagcttactcgtaagagcttatgctataagctgcaaa 374  Q
    |||||||||||| || | |||| | |||||||||| || |||||| || |||| |||||||||||||||||||||    
T  33080662 aaaacaatttgacttgaatttatcctgtgttatagaaaaagcttattcataagtgcttatgctataagctgcaaa 33080736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 344
Target Start/End: Complemental strand, 24782052 - 24782005
Alignment:
Q  297 atgaaaacaatttgattttattttaacttgtgttatagtaatagctta 344  Q
    |||||||||||||||||| |||||| ||| |||||||| |||||||||    
T  24782052 atgaaaacaatttgatttgattttatcttttgttatagaaatagctta 24782005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 344
Target Start/End: Complemental strand, 1403012 - 1402942
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 344  Q
    ||||||||||| |||||| ||| ||||||| | ||| | ||||||||| ||| |||||||| |||||||||    
T  1403012 tatgaaaacaatttatagcttatatgaaaatagtttaactttattttatcttttgttatagaaatagctta 1402942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 344
Target Start/End: Original strand, 2027460 - 2027530
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 344  Q
    ||||| |||| ||||||||||| ||||||| | ||||| ||||||||| ||| |||||||  |||||||||    
T  2027460 tatgagaacagcttataggttatatgaaaatagtttgactttattttatcttttgttataaaaatagctta 2027530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 344
Target Start/End: Original strand, 9093610 - 9093680
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 344  Q
    |||||||||| ||||||| ||| | ||||||||||| | ||||||||| ||| || ||||| |||||||||    
T  9093610 tatgaaaacagcttatagcttatacgaaaacaatttaactttattttatcttttgatatagaaatagctta 9093680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 344
Target Start/End: Complemental strand, 33067174 - 33067105
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 344  Q
    |||||||||||||||||| | | |||||||||||| || ||||||||  ||| | ||||||||||||||||    
T  33067174 tatgaaaacaacttatagctaa-atgaaaacaattcgactttattttcgcttttcttatagtaatagctta 33067105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 344
Target Start/End: Original strand, 24836262 - 24836323
Alignment:
Q  283 aacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 344  Q
    ||||||||| ||| | ||||||||||||| ||||||||| ||| |||||||| |||| ||||    
T  24836262 aacttatagtttatacgaaaacaatttgactttattttatcttttgttatagaaataactta 24836323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 334
Target Start/End: Original strand, 2727910 - 2727970
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatag 334  Q
    |||||||||||||||||| ||| || || |||||||||||||  |||| ||| ||||||||    
T  2727910 tatgaaaacaacttatagcttatatcaatacaatttgatttttgtttatcttttgttatag 2727970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 322
Target Start/End: Complemental strand, 5623172 - 5623124
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaa 322  Q
    |||||||||||||||||| ||| |||||||| |||||  ||||||||||    
T  5623172 tatgaaaacaacttatagtttatatgaaaactatttggctttattttaa 5623124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 344
Target Start/End: Complemental strand, 34405095 - 34405051
Alignment:
Q  300 aaaacaatttgattttattttaacttgtgttatagtaatagctta 344  Q
    |||||||||||| ||||||||||||| | |||||| |||||||||    
T  34405095 aaaacaatttgactttattttaacttttattatagaaatagctta 34405051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 274 - 340
Target Start/End: Complemental strand, 10303815 - 10303751
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatag 340  Q
    |||||||||||||||  ||||| ||||||||||||||| ||||||||| ||| |||||||| |||||    
T  10303815 tatgaaaacaactta--ggttaaatgaaaacaatttgactttattttatcttttgttatagaaatag 10303751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 394
Target Start/End: Original strand, 18857454 - 18857574
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagcttactcgtaagagcttatgctataagctgcaa 373  Q
    |||||||||| ||||||| ||| |  |||||||||||| ||||||||| | |||||||| | ||||||||| || |||   ||||  ||| |||||||||    
T  18857454 tatgaaaacagcttatagattatagaaaaacaatttgactttattttatcgtgtgttattgaaatagcttattcataaacacttacactacaagctgcaa 18857553  T
Q  374 attatgtaatttatccaaaca 394  Q
    | || ||  ||||||||||||    
T  18857554 aataagttgtttatccaaaca 18857574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 321
Target Start/End: Complemental strand, 12975363 - 12975316
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttatttta 321  Q
    |||||| ||| ||||||| ||| |||||||||||||||||||||||||    
T  12975363 tatgaacacagcttatagcttatatgaaaacaatttgattttatttta 12975316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 317
Target Start/End: Original strand, 15905563 - 15905602
Alignment:
Q  278 aaaacaacttataggttacatgaaaacaatttgattttat 317  Q
    |||||||||||||| |||||| ||||||||||||||||||    
T  15905563 aaaacaacttatagtttacataaaaacaatttgattttat 15905602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 344
Target Start/End: Complemental strand, 10363745 - 10363696
Alignment:
Q  295 acatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 344  Q
    ||||||||||||||| | ||||||||| ||| |||||||| |||||||||    
T  10363745 acatgaaaacaatttaactttattttatcttttgttatagaaatagctta 10363696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 339
Target Start/End: Original strand, 37526253 - 37526318
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaata 339  Q
    |||||||||||||||||| ||| ||||||||  |||||||| |||||| ||| | |||||| ||||    
T  37526253 tatgaaaacaacttatagcttatatgaaaactttttgatttgattttatcttttattatagaaata 37526318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 339
Target Start/End: Original strand, 37588414 - 37588479
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaata 339  Q
    |||||||||||||||||| ||| ||||||||  |||||||| |||||| ||| | |||||| ||||    
T  37588414 tatgaaaacaacttatagcttatatgaaaactttttgatttgattttatcttttattatagaaata 37588479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 339
Target Start/End: Original strand, 37690691 - 37690756
Alignment:
Q  274 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaata 339  Q
    |||||||||||||||||| ||| ||||||||  |||||||| |||||| ||| | |||||| ||||    
T  37690691 tatgaaaacaacttatagcttatatgaaaactttttgatttgattttatcttttattatagaaata 37690756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 321
Target Start/End: Complemental strand, 40120134 - 40120089
Alignment:
Q  276 tgaaaacaacttataggttacatgaaaacaatttgattttatttta 321  Q
    |||||||||| ||||| ||| |||||||||||||||||| ||||||    
T  40120134 tgaaaacaacctatagcttatatgaaaacaatttgatttgatttta 40120089  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 320
Target Start/End: Complemental strand, 41016193 - 41016149
Alignment:
Q  276 tgaaaacaacttataggttacatgaaaacaatttgattttatttt 320  Q
    |||||||||||||||| ||| ||||||||| ||||| ||||||||    
T  41016193 tgaaaacaacttatagcttatatgaaaacagtttgaatttatttt 41016149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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