View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3900_low_8 (Length: 318)
Name: NF3900_low_8
Description: NF3900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3900_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 99 - 311
Target Start/End: Complemental strand, 29019164 - 29018952
Alignment:
| Q |
99 |
caaagaaatggagaattgcgagttcgaactcacgtcacaacatatcaaatttctctccaatcttttatcatttgagctttacttatagacatatattgac |
198 |
Q |
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| T |
29019164 |
caaagaaatagagaattgcgaattcgaacttacgtcacaacatatcaaatgtctctccaatcttttatcatttgaactttacttatagacatgtattgac |
29019065 |
T |
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| Q |
199 |
attttatatgagaaaatattatagtattaggggaaggaatatagggattaccttccctggatgagtattgccccaatctacagcatacttaatatcttga |
298 |
Q |
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| T |
29019064 |
attttatatgagaaaatattatagtattaggggaaggaatatagggattaccttccctggatgagtattgccccaatcaacagcatacttaatatcttga |
29018965 |
T |
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| Q |
299 |
cacaggttctgct |
311 |
Q |
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|||| ||| |||| |
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| T |
29018964 |
cacatgttttgct |
29018952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 119 - 311
Target Start/End: Complemental strand, 29040505 - 29040311
Alignment:
| Q |
119 |
agttcgaactcacgtcacaacatatcaaatttctctccaatcttttatcatttgagctttacttat-agacatatattgacattttatatgagaaaatat |
217 |
Q |
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| T |
29040505 |
agttcaaactcaagtcccagaatatcaaatgtttatccaatcttttatcgtttgaactatacttctgaggcatatattgagattttataacagcaattac |
29040406 |
T |
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| Q |
218 |
tatagtattaggggaa-ggaatatagggattaccttccctggatgagtattgccccaatctacagcatacttaatatcttgacacaggttctgct |
311 |
Q |
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| T |
29040405 |
tatagtattacgggaaaggaatatagggattaccttctctggatgtgtattgccccaatcaacagcatacttaatatcttgacacatgttttgct |
29040311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 29041223 - 29041160
Alignment:
| Q |
20 |
acgttctcttcaacgaaccttgtaccttctctgccaatctcttgtgcctgttgaattatgcatt |
83 |
Q |
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| T |
29041223 |
acgttctcttcaacgaaccttgtaccttctctgccaatctcttgtgcctgttgaattatgcatt |
29041160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 29019530 - 29019471
Alignment:
| Q |
20 |
acgttctcttcaacgaaccttgtaccttctctgccaatctcttgtgcctgttgaattatg |
79 |
Q |
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| T |
29019530 |
acgttctcttctatgaatcttgtcccttctctgccaatctcttctgcctgttgaattatg |
29019471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 185
Target Start/End: Complemental strand, 26919928 - 26919846
Alignment:
| Q |
104 |
aaatggagaattgcgagttcgaactcacgtcacaacatatcaaatttctctccaa-tcttttatcatttgagctttacttata |
185 |
Q |
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| T |
26919928 |
aaatggagaattgtgagttcatcctcacgtcccaacatatcaaatatctttacaatttttttatcatttgagttatacttata |
26919846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 183
Target Start/End: Original strand, 39992176 - 39992223
Alignment:
| Q |
136 |
caacatatcaaatttctctccaatcttttatcatttgagctttactta |
183 |
Q |
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| T |
39992176 |
caacatatcaaatttctctgcaattctttatcatttgagttttactta |
39992223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 174
Target Start/End: Complemental strand, 15091360 - 15091290
Alignment:
| Q |
104 |
aaatggagaattgcgagttcgaactcacgtcacaacatatcaaatttctctccaatcttttatcatttgag |
174 |
Q |
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| T |
15091360 |
aaatggagaattgtgagttcaaactcacgccccaacatatcaaatgtctttgcaatattttaccatctgag |
15091290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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