View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3901_high_2 (Length: 312)
Name: NF3901_high_2
Description: NF3901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3901_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 17 - 302
Target Start/End: Original strand, 35829826 - 35830105
Alignment:
| Q |
17 |
gtttctcatcactccaaatataaggtttcaatttcttcatactgctgctggccctacacatttactagtggctgccctattgctagacccatactgctta |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
35829826 |
gtttctcatcactccaaatataaggtttcaatttcttcatactgctgctggccctacacatttactagtggctgccctattgctggacccatactgctta |
35829925 |
T |
|
| Q |
117 |
ttgaaagaacacaaaccgtgagttaggctgaagcatggccctacaaacctacaagtggtgcctattaaattgactaactagctcaagtataccaagtatg |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
35829926 |
ttgaaagaacacaaaccgtgagttaggctgaagcatggccctacaaacctacaagtggtgcctattaaattgactaactagctagagtataccaagtatg |
35830025 |
T |
|
| Q |
217 |
aataaactctaataaagaaacctttacttacattgtttgtattcaatttgaatttgaatttgaattgaactttgtttaaacctatg |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
35830026 |
aataaactctaataaagaaacctttacttacattgtttgtattc------aatttgaatttgaattgaactttgtttaaacctatg |
35830105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University