View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3902_high_13 (Length: 236)

Name: NF3902_high_13
Description: NF3902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3902_high_13
NF3902_high_13
[»] chr1 (3 HSPs)
chr1 (73-152)||(39717397-39717476)
chr1 (73-152)||(42250232-42250314)
chr1 (72-137)||(31497696-31497761)
[»] chr4 (4 HSPs)
chr4 (84-152)||(39433384-39433452)
chr4 (73-136)||(39772015-39772077)
chr4 (73-151)||(42584410-42584488)
chr4 (1-48)||(17843777-17843823)
[»] chr3 (2 HSPs)
chr3 (80-214)||(38665485-38665625)
chr3 (73-134)||(50691063-50691124)
[»] chr6 (2 HSPs)
chr6 (80-156)||(7624270-7624346)
chr6 (68-155)||(6353933-6354020)
[»] chr8 (1 HSPs)
chr8 (73-135)||(14292411-14292473)
[»] chr5 (1 HSPs)
chr5 (68-125)||(6168245-6168302)


Alignment Details
Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 73 - 152
Target Start/End: Original strand, 39717397 - 39717476
Alignment:
Q  73 aaaaagggtattttggtatttttgatggtctgtacgctggacaaaaagttgtctcgtggtttagttagggacaagaattt 152  Q
    |||||||||||||||||||||||||| || ||||| || |||||||||||||||| ||||||||| |||||||| |||||    
T  39717397 aaaaagggtattttggtatttttgatagtatgtactctagacaaaaagttgtctcatggtttagtgagggacaaaaattt 39717476  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 152
Target Start/End: Original strand, 42250232 - 42250314
Alignment:
Q  73 aaaaagggtattttggtatttttgatggtctgtacgctggacaaaaagttgtc---tcgtggtttagttagggacaagaattt 152  Q
    ||||||||||||||| ||| || ||| |||||||| || ||||||||||||||   || ||||||||| ||||||||||||||    
T  42250232 aaaaagggtattttgatatattcgatagtctgtactctagacaaaaagttgtctcatcatggtttagtgagggacaagaattt 42250314  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 137
Target Start/End: Complemental strand, 31497761 - 31497696
Alignment:
Q  72 aaaaaagggtattttggtatttttgatggtctgtacgctggacaaaaagttgtctcgtggtttagt 137  Q
    |||||| ||||||||| |||||||||| || ||||   |||||||||||||||||| |||||||||    
T  31497761 aaaaaatggtattttgatatttttgatagtttgtagtatggacaaaaagttgtctcatggtttagt 31497696  T

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Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 84 - 152
Target Start/End: Complemental strand, 39433452 - 39433384
Alignment:
Q  84 tttggtatttttgatggtctgtacgctggacaaaaagttgtctcgtggtttagttagggacaagaattt 152  Q
    ||||||| |||||||||| ||||| ||||| |||||||||||||| |||||||| ||||||||||||||    
T  39433452 tttggtaattttgatggtttgtactctggataaaaagttgtctcgcggtttagtgagggacaagaattt 39433384  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 136
Target Start/End: Complemental strand, 39772077 - 39772015
Alignment:
Q  73 aaaaagggtattttggtatttttgatggtctgtacgctggacaaaaagttgtctcgtggtttag 136  Q
    |||||||||||||||||||||||||| |||| || |  ||||||||||||||||| ||||||||    
T  39772077 aaaaagggtattttggtatttttgatagtctatatgtcggacaaaaagttgtctc-tggtttag 39772015  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 73 - 151
Target Start/End: Complemental strand, 42584488 - 42584410
Alignment:
Q  73 aaaaagggtattttggtatttttgatggtctgtacgctggacaaaaagttgtctcgtggtttagttagggacaagaatt 151  Q
    |||| ||||||||||||||||||||| |||||| | || ||| ||||||| || | ||||| ||| |||||||||||||    
T  42584488 aaaatgggtattttggtatttttgatagtctgtgctctagactaaaagttatcccatggttaagtgagggacaagaatt 42584410  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 17843777 - 17843823
Alignment:
Q  1 ctaaggtttttaatgtcttcacagaccgcaacacgattgcaattaggc 48  Q
    ||||||| ||| |||||| |||||||||||||||||||||||||||||    
T  17843777 ctaaggtgtttgatgtct-cacagaccgcaacacgattgcaattaggc 17843823  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 214
Target Start/End: Complemental strand, 38665625 - 38665485
Alignment:
Q  80 gtattttggtatttttgatggtctgtacgctggacaaaaagttgtctcgtggtttagttagggacaagaa------tttttgtccagtctcttaccacct 173  Q
    ||||||||||||||||||| || ||||| || |||||||||||||| | ||||||| | ||||||| |||      |||||||||||||  || | ||||    
T  38665625 gtattttggtatttttgatagtttgtactcttgacaaaaagttgtcccatggtttaatgagggacatgaattattgtttttgtccagtcatttgctacct 38665526  T
Q  174 gatttgtacaatctcatgactagtttctaaatcaaataggg 214  Q
    | ||||| |||   |||||| ||||||||||||||| ||||    
T  38665525 gttttgtccaagtccatgaccagtttctaaatcaaaaaggg 38665485  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 134
Target Start/End: Original strand, 50691063 - 50691124
Alignment:
Q  73 aaaaagggtattttggtatttttgatggtctgtacgctggacaaaaagttgtctcgtggttt 134  Q
    ||||||||||||||| |||||||||| |||||||| ||||||||||||  ||||| ||||||    
T  50691063 aaaaagggtattttgatatttttgatagtctgtactctggacaaaaagcggtctcatggttt 50691124  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 156
Target Start/End: Complemental strand, 7624346 - 7624270
Alignment:
Q  80 gtattttggtatttttgatggtctgtacgctggacaaaaagttgtctcgtggtttagttagggacaagaatttttgt 156  Q
    |||||||||| |||||||| || | ||| ||||||||||| ||||||| || |||||| ||||||||||||| ||||    
T  7624346 gtattttggtgtttttgatagtatttactctggacaaaaaattgtctcatgctttagtgagggacaagaattcttgt 7624270  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 155
Target Start/End: Complemental strand, 6354020 - 6353933
Alignment:
Q  68 aaataaaaaagggtattttggtatttttgatggtctgtacgctggacaaaaagttgtctcgtggtttagttagggacaagaatttttg 155  Q
    ||||||||||||| |||||||||||||||||  | ||||| || || |||||||| |||| ||||||||| | | ||| |||||||||    
T  6354020 aaataaaaaagggaattttggtatttttgatactatgtactctagataaaaagttatctcatggtttagtgatgcacatgaatttttg 6353933  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 135
Target Start/End: Complemental strand, 14292473 - 14292411
Alignment:
Q  73 aaaaagggtattttggtatttttgatggtctgtacgctggacaaaaagttgtctcgtggttta 135  Q
    ||||| |||||||||||| |||| ||| | ||||| ||| ||||||||||||||| |||||||    
T  14292473 aaaaatggtattttggtacttttaatgatttgtactctgcacaaaaagttgtctcatggttta 14292411  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 6168302 - 6168245
Alignment:
Q  68 aaataaaaaagggtattttggtatttttgatggtctgtacgctggacaaaaagttgtc 125  Q
    ||||||||||  ||||||||||||||||||| || ||||  || ||||||||||||||    
T  6168302 aaataaaaaatagtattttggtatttttgatagtttgtaatctagacaaaaagttgtc 6168245  T

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