View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3902_high_3 (Length: 580)
Name: NF3902_high_3
Description: NF3902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3902_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 217 - 570
Target Start/End: Complemental strand, 190741 - 190384
Alignment:
| Q |
217 |
tttgaacggcgaaatgaataatatgacgcagttttgctattgagattgataggcattgccagctttgaagtggatatgaaaatcccaccaactttcattt |
316 |
Q |
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| T |
190741 |
tttgatcggcgaaatgaataatatgacgcagttttgctattgagattgataggcattgccagctttgaagtggatatggaaatcccaccaactttcattt |
190642 |
T |
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| Q |
317 |
tcaaatttatttattgatttgtaaatctaaatattttagtgacatagaagaggaaaagtaaaccttttcctccccttc----aatggaacttaaccaata |
412 |
Q |
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| T |
190641 |
tcaaatttatttattgatttgtaaatctaaatattttagtgacatagaagaggaaaagtaaaccttttcctccccttccttcaatggaacttaaccaata |
190542 |
T |
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| Q |
413 |
tatacaataactgataattttattagagagagaaatatggttgaaaatttgaatgctcgactacatgttagtttatttatttataataaggaattggttg |
512 |
Q |
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| T |
190541 |
tatacaataactgataattttattagagagagaaatatggttgaaaatttgaatgctcgactacatgttagtttatttatttataataaggaattggttg |
190442 |
T |
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| Q |
513 |
catgtagttttgaggaaggggaaccattaattaattggttcatcattgtgagcctatg |
570 |
Q |
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| T |
190441 |
catgtagttttgaggaaggggaaccattaattaattggttcatcattgtgagcctatg |
190384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 190939 - 190767
Alignment:
| Q |
16 |
tcagctacatcatccatcaactccttcacctcagccatgctcaagaaccttattggaatcacaaaccttctaaactccggtccaacataaacggcaacgt |
115 |
Q |
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| T |
190939 |
tcagctatatcatccatcaactccttcacctcagccatgctcaagaaccttattggaatcacaaaccttctaaactccggtccaacataaacggcaacgt |
190840 |
T |
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| Q |
116 |
atcctttcggaaccttgctcatcttccggtttccgatgccatccgaagattctctggcttccatcaacaaatg |
188 |
Q |
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| T |
190839 |
atcctttcggaaccttgctcatcttccggtttccgatgccatccgaagattctctggcttccattaataaatg |
190767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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